ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9d01 |
|---|---|
| Clone Library Name | barley_pub |
>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 894 Score = 35.0 bits (79), Expect = 0.16 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = +3 Query: 279 VTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADL 458 VT+ +FK +I F + E ++ D IKYLD+++E V + + Sbjct: 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEY 64 Query: 459 EECIEISRHSGTHV 500 EE ++++ G + Sbjct: 65 EEALKMAVKQGNQL 78
>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) (1A1-3B) Length = 966 Score = 35.0 bits (79), Expect = 0.16 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = +3 Query: 279 VTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADL 458 VT+ +FK +I F + E ++ D IKYLD+++E V + + Sbjct: 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEY 64 Query: 459 EECIEISRHSGTHV 500 EE ++++ G + Sbjct: 65 EEALKMAVKQGNQL 78
>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 983 Score = 33.9 bits (76), Expect = 0.36 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Frame = +3 Query: 279 VTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADL 458 VT+ +FK + F + E ++ D IKYLD+++E + + + Sbjct: 5 VTLNVTFKNETQSFLVSDPENTTWADVEAMVKVSFDLNTIQIKYLDEENEEISINSQGEY 64 Query: 459 EECIEISR-----------HSGTHVI 503 EE ++++ H G HV+ Sbjct: 65 EEALKMANIKQGNQLQMQVHEGCHVV 90
>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) Length = 988 Score = 33.5 bits (75), Expect = 0.48 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Frame = +3 Query: 279 VTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADL 458 VT+ +FK + F + E ++ D IKYLD+++E + + + Sbjct: 5 VTLNVTFKNETQSFLVSDPENTTWADVEAMVKVSFDLNTIQIKYLDEENEEISINSQGEY 64 Query: 459 EECIEISR-----------HSGTHVI 503 EE ++++ H G HV+ Sbjct: 65 EEALKMANIKQGNQLQMQVHEGYHVV 90
>RPB3_SCHPO (P37382) DNA-directed RNA polymerase II 33 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 3) Length = 297 Score = 31.2 bits (69), Expect = 2.4 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Frame = +3 Query: 186 SKDLKNLFGSAIGQPMLAPPSNFGP----MRNSGTVTIKASFKEDIVRFRFPCS-SSVMA 350 ++DL S++G P+LA P + GP +R ++++ K+ I + S +S +A Sbjct: 119 ARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVA 178 Query: 351 LKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADLEE 464 + + +L+ F+ D D EW K + NAD EE Sbjct: 179 FEYDPWNKLQHTDYWFE---NDADAEWPK-SKNADWEE 212
>HAGA1_PORGI (P59915) Hemagglutinin A precursor| Length = 2164 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = +3 Query: 168 IEDSGSSKDLKNLFGSAIGQPMLA--PPSNFGPMRNSGTVTIKASFKEDI 311 +E S ++NL GSA+GQ + N P N GT T+ SF+ I Sbjct: 468 VEGSNEFAPVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTLSESFENGI 517
>HAGA2_PORGI (Q51845) Hemagglutinin A precursor| Length = 2628 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = +3 Query: 168 IEDSGSSKDLKNLFGSAIGQPMLA--PPSNFGPMRNSGTVTIKASFKEDI 311 +E S ++NL GSA+GQ + N P N GT T+ SF+ I Sbjct: 468 VEGSNEFAHVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTLSESFENGI 517
>EXPR_XANCP (P23314) Extracellular protease precursor (EC 3.4.21.-)| Length = 580 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +1 Query: 55 LPAYCFNVLGTTRTTTESGKGSQKNLSKNQSYHFPGCSL 171 LPA C NV+ TT+ K S N PG S+ Sbjct: 348 LPANCANVIAVAATTSAGAKASYSNFGTGIDVSAPGSSI 386
>DCR1_DROME (Q9VCU9) Endoribonuclease Dcr-1 (EC 3.1.26.-) (Protein dicer-1)| Length = 2249 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +3 Query: 345 MALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADLEECIEISRHS 488 + L D++ K++ D G+ + D+D EW L L E ++ SR S Sbjct: 1268 LLLADDIRKQVSADLGLGRQQIEDEDFEWPMLDFGWSLSEVLKKSRES 1315
>Y489_MYCPN (P75296) Hypothetical lipoprotein MG338 homolog precursor| (P02_orf1300) Length = 1300 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 90 KNHNRIRXGFTKEPFQEPELPLSRMLIEDSGSSKDLKNLFGSAI 221 +N ++ GFT+ +PE L L ED+G+ L+ FG A+ Sbjct: 39 QNRSKQLIGFTENNIIKPEAVLKAALAEDNGTETILRVNFGEAL 82
>NIFV1_ANASP (Q44290) Homocitrate synthase 1 (EC 2.3.3.14)| Length = 377 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +2 Query: 173 GFW*FQGFEESLRFS-NWPTNVSASQQFWANAKFRYCDDKGEL 298 G W G E+S R N+ +V+ Q W ++FR+CD G L Sbjct: 128 GLWVAVGGEDSSRADENFLLDVALYAQEWGASRFRFCDTVGVL 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,181,672 Number of Sequences: 219361 Number of extensions: 1915163 Number of successful extensions: 5551 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5550 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
