ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9c24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185178.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1140 Score = 507 bits (256), Expect = e-141 Identities = 417/471 (88%) Strand = Plus / Plus Query: 2 gggnagggcggcgtggcgcggctgctcgaccacctcgtcatcgtcaccatggacccggcg 61 ||| ||||||||||| |||||||||| |||||||| || ||||||||||||||||| ||| Sbjct: 424 ggggagggcggcgtgtcgcggctgctggaccacctggtgatcgtcaccatggaccccgcg 483 Query: 62 gcgtacgccgggtgccagctcgtgcaccggcactgctacttcctcaggaccaccggcgtc 121 ||||||| ||||||||| |||||||| || |||||||||||| | |||||||||||| Sbjct: 484 gcgtacgaggggtgccaggcggtgcaccgccattgctacttcctccgcaccaccggcgtc 543 Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct: 544 gactaccgctccgagaagatgttcatgagcaaggactacctcgagatgatgtggggtcgc 603 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacggacgtggac 241 |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 604 aacaagtttcagcagaccatccttgagctcggctacaacttcctcttcacggatgtggac 663 Query: 242 gtgatgtggttccgtgacccgttcaagcacatctccatgggggcggacatcgccatctcc 301 |||||||||||| | |||||||||| |||||| || ||||| || ||||||||||||||| Sbjct: 664 gtgatgtggttcagggacccgttcaggcacatatcaatgggagcagacatcgccatctcc 723 Query: 302 agcgacgtcttcatcggggacccctacagcctcggcaacttccccaacggcggcttcctc 361 |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 724 agcgacgtgttcatcggcgacccctacagcctcggcaacttccccaatggcggcttcctg 783 Query: 362 ttcgtgcgatcatgcaacaagaccatcgagttctaccggcactggcaggccggacggtac 421 ||||||||||| | |||||||| |||| ||||||||| |||||| || ||| Sbjct: 784 ttcgtgcgatccaacgacaagaccctcgatttctaccggagttggcagcaagggaggtgg 843 Query: 422 cgcttcttcggcaagcacgaacaggacgtgttcaacctcatcaagcacgag 472 || |||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 844 cgattcttcgggaagcacgagcaggacgtgttcaacctgatcaagcacgag 894
>gb|AY111423.1| Zea mays CL17019_1 mRNA sequence Length = 899 Score = 327 bits (165), Expect = 2e-86 Identities = 377/447 (84%), Gaps = 3/447 (0%) Strand = Plus / Minus Query: 29 gaccacctcgtcatcgtcaccatggacccggcggcgtacgccgggtgccagctcgtgcac 88 |||||||| ||||||||||||||||||||||| || |||| || ||| | ||||||| Sbjct: 860 gaccacctggtcatcgtcaccatggacccggccgcctacgagggctgcagggccgtgcac 801 Query: 89 cggcactgctacttcctcaggac---caccggcgtcgactaccgcggcgagaagttcttc 145 | ||||||||||||||| | || || ||||||||||||||| |||||| | ||| Sbjct: 800 agccactgctacttcctccgcacgggcaacggcgtcgactaccgatcagagaaggtgttc 741 Query: 146 atgagcaaggactacctcgagatgatgtggggccgcaacaagttccagcagaccatcctt 205 ||||||||||||||||| |||||||||||||| |||||| ||||||||||| | || Sbjct: 740 atgagcaaggactacctggagatgatgtggggacgcaaccgcttccagcagacggtgctg 681 Query: 206 gagctcggatacaacttcctcttcacggacgtggacgtgatgtggttccgtgacccgttc 265 ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 680 gagctgggatacaacttcctattcacggacgttgacgtgatgtggttccgcgacccgttc 621 Query: 266 aagcacatctccatgggggcggacatcgccatctccagcgacgtcttcatcggggacccc 325 ||||||||||||| ||| ||||||||||||||||||||||| | ||| || |||||| Sbjct: 620 cgccacatctccatggcggccgacatcgccatctccagcgacgtgtacatgggcgacccc 561 Query: 326 tacagcctcggcaacttccccaacggcggcttcctcttcgtgcgatcatgcaacaagacc 385 |||||||| |||||||||||||||||||||||||||||||||| | | |||||||| Sbjct: 560 tacagcctgcgcaacttccccaacggcggcttcctcttcgtgcgggcgtcggacaagacc 501 Query: 386 atcgagttctaccggcactggcaggccggacggtaccgcttcttcggcaagcacgaacag 445 ||| ||||||||| |||||| || |||| |||||| | || |||||||| ||| Sbjct: 500 gtcgccttctaccgggcgtggcagcaggggcggtggcgcttcctggggaagcacgagcag 441 Query: 446 gacgtgttcaacctcatcaagcacgag 472 ||||||||||||||||||||||||||| Sbjct: 440 gacgtgttcaacctcatcaagcacgag 414
>dbj|AK069826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E05, full insert sequence Length = 1059 Score = 315 bits (159), Expect = 7e-83 Identities = 251/281 (89%), Gaps = 2/281 (0%) Strand = Plus / Plus Query: 2 gggnagggcggcgtggcgcggctgctcgaccacctcgtcatcgtcaccatggacccggcg 61 ||| ||||||||||| |||||||||| |||||||| || ||||||||||||||||| ||| Sbjct: 781 ggggagggcggcgtgtcgcggctgctggaccacctggtgatcgtcaccatggaccccgcg 840 Query: 62 gcgtacgccgggtgccagctcgtgcaccggcactgctacttcctcaggaccaccggcgtc 121 ||||||| ||||||||| |||||||| || |||||||||||| | |||||||||||| Sbjct: 841 gcgtacgaggggtgccaggcggtgcaccgccattgctacttcctccgcaccaccggcgtc 900 Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 ||||||||| ||| || | ||||||||||||||||||||||||||||||||||| ||| Sbjct: 901 gactaccgctccga--agatgttcatgagcaaggactacctcgagatgatgtggggtcgc 958 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacggacgtggac 241 |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 959 aacaagtttcagcagaccatccttgagctcggctacaacttcctcttcacggatgtggac 1018 Query: 242 gtgatgtggttccgtgacccgttcaagcacatctccatggg 282 |||||||||||| | |||||||||| |||||| || ||||| Sbjct: 1019 gtgatgtggttcagggacccgttcaggcacatatcaatggg 1059
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 287 bits (145), Expect = 2e-74 Identities = 210/232 (90%) Strand = Plus / Plus Query: 2 gggnagggcggcgtggcgcggctgctcgaccacctcgtcatcgtcaccatggacccggcg 61 ||| ||||||||||| |||||||||| |||||||| || ||||||||||||||||| ||| Sbjct: 35452428 ggggagggcggcgtgtcgcggctgctggaccacctggtgatcgtcaccatggaccccgcg 35452487 Query: 62 gcgtacgccgggtgccagctcgtgcaccggcactgctacttcctcaggaccaccggcgtc 121 ||||||| ||||||||| |||||||| || |||||||||||| | |||||||||||| Sbjct: 35452488 gcgtacgaggggtgccaggcggtgcaccgccattgctacttcctccgcaccaccggcgtc 35452547 Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct: 35452548 gactaccgctccgagaagatgttcatgagcaaggactacctcgagatgatgtggggtcgc 35452607 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacgg 233 |||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 35452608 aacaagtttcagcagaccatccttgagctcggctacaacttcctcttcacgg 35452659 Score = 224 bits (113), Expect = 2e-55 Identities = 206/237 (86%) Strand = Plus / Plus Query: 236 gtggacgtgatgtggttccgtgacccgttcaagcacatctccatgggggcggacatcgcc 295 |||||||||||||||||| | |||||||||| |||||| || ||||| || ||||||||| Sbjct: 35453281 gtggacgtgatgtggttcagggacccgttcaggcacatatcaatgggagcagacatcgcc 35453340 Query: 296 atctccagcgacgtcttcatcggggacccctacagcctcggcaacttccccaacggcggc 355 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 35453341 atctccagcgacgtgttcatcggcgacccctacagcctcggcaacttccccaatggcggc 35453400 Query: 356 ttcctcttcgtgcgatcatgcaacaagaccatcgagttctaccggcactggcaggccgga 415 ||||| ||||||||||| | |||||||| |||| ||||||||| |||||| || Sbjct: 35453401 ttcctgttcgtgcgatccaacgacaagaccctcgatttctaccggagttggcagcaaggg 35453460 Query: 416 cggtaccgcttcttcggcaagcacgaacaggacgtgttcaacctcatcaagcacgag 472 ||| || |||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 35453461 aggtggcgattcttcgggaagcacgagcaggacgtgttcaacctgatcaagcacgag 35453517 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 207 agctcggatacaacttcctcttcacgg 233 ||||||| ||||||||||||||||||| Sbjct: 35464302 agctcggctacaacttcctcttcacgg 35464328 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 437 cacgaacaggacgtgttcaacctcatcaagc 467 ||||| ||||||||| ||||||||||||||| Sbjct: 1648159 cacgaccaggacgtgctcaacctcatcaagc 1648129
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 287 bits (145), Expect = 2e-74 Identities = 210/232 (90%) Strand = Plus / Plus Query: 2 gggnagggcggcgtggcgcggctgctcgaccacctcgtcatcgtcaccatggacccggcg 61 ||| ||||||||||| |||||||||| |||||||| || ||||||||||||||||| ||| Sbjct: 35542500 ggggagggcggcgtgtcgcggctgctggaccacctggtgatcgtcaccatggaccccgcg 35542559 Query: 62 gcgtacgccgggtgccagctcgtgcaccggcactgctacttcctcaggaccaccggcgtc 121 ||||||| ||||||||| |||||||| || |||||||||||| | |||||||||||| Sbjct: 35542560 gcgtacgaggggtgccaggcggtgcaccgccattgctacttcctccgcaccaccggcgtc 35542619 Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct: 35542620 gactaccgctccgagaagatgttcatgagcaaggactacctcgagatgatgtggggtcgc 35542679 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacgg 233 |||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 35542680 aacaagtttcagcagaccatccttgagctcggctacaacttcctcttcacgg 35542731 Score = 224 bits (113), Expect = 2e-55 Identities = 206/237 (86%) Strand = Plus / Plus Query: 236 gtggacgtgatgtggttccgtgacccgttcaagcacatctccatgggggcggacatcgcc 295 |||||||||||||||||| | |||||||||| |||||| || ||||| || ||||||||| Sbjct: 35543353 gtggacgtgatgtggttcagggacccgttcaggcacatatcaatgggagcagacatcgcc 35543412 Query: 296 atctccagcgacgtcttcatcggggacccctacagcctcggcaacttccccaacggcggc 355 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 35543413 atctccagcgacgtgttcatcggcgacccctacagcctcggcaacttccccaatggcggc 35543472 Query: 356 ttcctcttcgtgcgatcatgcaacaagaccatcgagttctaccggcactggcaggccgga 415 ||||| ||||||||||| | |||||||| |||| ||||||||| |||||| || Sbjct: 35543473 ttcctgttcgtgcgatccaacgacaagaccctcgatttctaccggagttggcagcaaggg 35543532 Query: 416 cggtaccgcttcttcggcaagcacgaacaggacgtgttcaacctcatcaagcacgag 472 ||| || |||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 35543533 aggtggcgattcttcgggaagcacgagcaggacgtgttcaacctgatcaagcacgag 35543589 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 207 agctcggatacaacttcctcttcacgg 233 ||||||| ||||||||||||||||||| Sbjct: 35554374 agctcggctacaacttcctcttcacgg 35554400 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 437 cacgaacaggacgtgttcaacctcatcaagc 467 ||||| ||||||||| ||||||||||||||| Sbjct: 1648157 cacgaccaggacgtgctcaacctcatcaagc 1648127
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 287 bits (145), Expect = 2e-74 Identities = 210/232 (90%) Strand = Plus / Minus Query: 2 gggnagggcggcgtggcgcggctgctcgaccacctcgtcatcgtcaccatggacccggcg 61 ||| ||||||||||| |||||||||| |||||||| || ||||||||||||||||| ||| Sbjct: 35198 ggggagggcggcgtgtcgcggctgctggaccacctggtgatcgtcaccatggaccccgcg 35139 Query: 62 gcgtacgccgggtgccagctcgtgcaccggcactgctacttcctcaggaccaccggcgtc 121 ||||||| ||||||||| |||||||| || |||||||||||| | |||||||||||| Sbjct: 35138 gcgtacgaggggtgccaggcggtgcaccgccattgctacttcctccgcaccaccggcgtc 35079 Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct: 35078 gactaccgctccgagaagatgttcatgagcaaggactacctcgagatgatgtggggtcgc 35019 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacgg 233 |||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 35018 aacaagtttcagcagaccatccttgagctcggctacaacttcctcttcacgg 34967 Score = 224 bits (113), Expect = 2e-55 Identities = 206/237 (86%) Strand = Plus / Minus Query: 236 gtggacgtgatgtggttccgtgacccgttcaagcacatctccatgggggcggacatcgcc 295 |||||||||||||||||| | |||||||||| |||||| || ||||| || ||||||||| Sbjct: 34345 gtggacgtgatgtggttcagggacccgttcaggcacatatcaatgggagcagacatcgcc 34286 Query: 296 atctccagcgacgtcttcatcggggacccctacagcctcggcaacttccccaacggcggc 355 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 34285 atctccagcgacgtgttcatcggcgacccctacagcctcggcaacttccccaatggcggc 34226 Query: 356 ttcctcttcgtgcgatcatgcaacaagaccatcgagttctaccggcactggcaggccgga 415 ||||| ||||||||||| | |||||||| |||| ||||||||| |||||| || Sbjct: 34225 ttcctgttcgtgcgatccaacgacaagaccctcgatttctaccggagttggcagcaaggg 34166 Query: 416 cggtaccgcttcttcggcaagcacgaacaggacgtgttcaacctcatcaagcacgag 472 ||| || |||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 34165 aggtggcgattcttcgggaagcacgagcaggacgtgttcaacctgatcaagcacgag 34109 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 207 agctcggatacaacttcctcttcacgg 233 ||||||| ||||||||||||||||||| Sbjct: 23324 agctcggctacaacttcctcttcacgg 23298
>ref|XM_483471.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1008 Score = 131 bits (66), Expect = 2e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 |||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct: 409 gactacagcgacgagaagcgcttcatgagcaaggactacctcgacatgatgtgggggcgc 468 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacggacgtggac 241 ||| ||||||||||||||||| ||||||| | ||||||||||||||||||| | ||| Sbjct: 469 aacctcttccagcagaccatcctccagctcggcttcaacttcctcttcacggacattgac 528 Query: 242 gtgatgtggttccg 255 | ||||||||||| Sbjct: 529 atcatgtggttccg 542
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Plus Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 |||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct: 26392517 gactacagcgacgagaagcgcttcatgagcaaggactacctcgacatgatgtgggggcgc 26392576 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacgg 233 ||| ||||||||||||||||| ||||||| | ||||||||||||||||| Sbjct: 26392577 aacctcttccagcagaccatcctccagctcggcttcaacttcctcttcacgg 26392628 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tccatgggggcggacatcgcc 295 ||||||||||||||||||||| Sbjct: 27653710 tccatgggggcggacatcgcc 27653730
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1789_C07 Length = 138944 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Plus Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 |||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct: 42069 gactacagcgacgagaagcgcttcatgagcaaggactacctcgacatgatgtgggggcgc 42128 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacgg 233 ||| ||||||||||||||||| ||||||| | ||||||||||||||||| Sbjct: 42129 aacctcttccagcagaccatcctccagctcggcttcaacttcctcttcacgg 42180
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Plus Query: 122 gactaccgcggcgagaagttcttcatgagcaaggactacctcgagatgatgtggggccgc 181 |||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct: 122098 gactacagcgacgagaagcgcttcatgagcaaggactacctcgacatgatgtgggggcgc 122157 Query: 182 aacaagttccagcagaccatccttgagctcggatacaacttcctcttcacgg 233 ||| ||||||||||||||||| ||||||| | ||||||||||||||||| Sbjct: 122158 aacctcttccagcagaccatcctccagctcggcttcaacttcctcttcacgg 122209
>ref|XM_463631.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 200 atccttgagctcggatacaacttcctcttcacggacgtggacgtgatgtggttccgtgac 259 ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct: 583 atcctcgagctcggatacaacttcctcttcacggacgtggacatcctgtggttccgtgac 642 Query: 260 ccgttcaagcacatctccatgggggcggacat 291 |||||| |||| || || |||| |||| |||| Sbjct: 643 ccgttcgagcagatgtcgatggcggcgcacat 674
>ref|NM_188795.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1571 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 155 gactacctcgagatgatgtggggccgcaacaagttccagcagaccatccttgagctcgga 214 |||||||| |||||||||||| | | |||| |||||||||||||||||| |||||||| Sbjct: 725 gactacctggagatgatgtggaggaggaacaggttccagcagaccatcctcgagctcggc 784 Query: 215 tacaacttcctcttcacggacgtggac 241 | || |||||||||||||||||||||| Sbjct: 785 ttcagcttcctcttcacggacgtggac 811
>dbj|AK065831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037A06, full insert sequence Length = 1571 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 155 gactacctcgagatgatgtggggccgcaacaagttccagcagaccatccttgagctcgga 214 |||||||| |||||||||||| | | |||| |||||||||||||||||| |||||||| Sbjct: 725 gactacctggagatgatgtggaggaggaacaggttccagcagaccatcctcgagctcggc 784 Query: 215 tacaacttcctcttcacggacgtggac 241 | || |||||||||||||||||||||| Sbjct: 785 ttcagcttcctcttcacggacgtggac 811
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 155 gactacctcgagatgatgtggggccgcaacaagttccagcagaccatccttgagctcgga 214 |||||||| |||||||||||| | | |||| |||||||||||||||||| |||||||| Sbjct: 11535488 gactacctggagatgatgtggaggaggaacaggttccagcagaccatcctcgagctcggc 11535547 Query: 215 tacaacttcctcttcacgg 233 | || |||||||||||||| Sbjct: 11535548 ttcagcttcctcttcacgg 11535566 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gctgctcgaccacctcgtcat 42 ||||||||||||||||||||| Sbjct: 4976672 gctgctcgaccacctcgtcat 4976692
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 155 gactacctcgagatgatgtggggccgcaacaagttccagcagaccatccttgagctcgga 214 |||||||| |||||||||||| | | |||| |||||||||||||||||| |||||||| Sbjct: 99146 gactacctggagatgatgtggaggaggaacaggttccagcagaccatcctcgagctcggc 99205 Query: 215 tacaacttcctcttcacgg 233 | || |||||||||||||| Sbjct: 99206 ttcagcttcctcttcacgg 99224
>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446G09 Length = 146898 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 155 gactacctcgagatgatgtggggccgcaacaagttccagcagaccatccttgagctcgga 214 |||||||| |||||||||||| | | |||| |||||||||||||||||| |||||||| Sbjct: 145008 gactacctggagatgatgtggaggaggaacaggttccagcagaccatcctcgagctcggc 145067 Query: 215 tacaacttcctcttcacgg 233 | || |||||||||||||| Sbjct: 145068 ttcagcttcctcttcacgg 145086
>ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacggacgtggacgtgatgtggttccgtgacc 260 |||| |||||||| ||||||||||||||||||||| ||| || ||| ||||||||||| Sbjct: 572 tcctcgagctcggctacaacttcctcttcacggactgtgacatggtgttgttccgtgacc 631 Query: 261 cgttcaagcacatc 274 ||||| ||||||| Sbjct: 632 cgttccggcacatc 645
>ref|XM_463632.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacggacgtggacgtgatgtggttccgtgacc 260 |||| |||||||| |||||||||||||||||||||||||| | |||||||| | |||| Sbjct: 548 tcctcgagctcggctacaacttcctcttcacggacgtggatatcttgtggttcagggacc 607 Query: 261 cgttcaagcacatc 274 ||||| ||||||| Sbjct: 608 cgttccggcacatc 621
>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence Length = 1334 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacggacgtggacgtgatgtggttccgtgacc 260 |||| |||||||| ||||||||||||||||||||| ||| || ||| ||||||||||| Sbjct: 600 tcctcgagctcggctacaacttcctcttcacggactgtgacatggtgttgttccgtgacc 659 Query: 261 cgttcaagcacatc 274 ||||| ||||||| Sbjct: 660 cgttccggcacatc 673
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 200 atccttgagctcggatacaacttcctcttcacgg 233 ||||| |||||||||||||||||||||||||||| Sbjct: 40186956 atcctcgagctcggatacaacttcctcttcacgg 40186989 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| ||||||||||||||||||| Sbjct: 40205531 tcctcgagctcggctacaacttcctcttcacgg 40205563 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| ||||||||||||||||||| Sbjct: 40196128 tcctcgagctcggctacaacttcctcttcacgg 40196160 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Plus Query: 232 ggacgtggacgtgatgtggttccgtgacccgttcaagcacatctccatgggggcggacat 291 |||||||||| | |||||||||||||||||||| |||| || || |||| |||| |||| Sbjct: 40187494 ggacgtggacatcctgtggttccgtgacccgttcgagcagatgtcgatggcggcgcacat 40187553 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| |||||| |||||||||||| Sbjct: 40209026 tcctcgagctcggctacaacctcctcttcacgg 40209058
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 200 atccttgagctcggatacaacttcctcttcacgg 233 ||||| |||||||||||||||||||||||||||| Sbjct: 130040 atcctcgagctcggatacaacttcctcttcacgg 130073 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| ||||||||||||||||||| Sbjct: 148615 tcctcgagctcggctacaacttcctcttcacgg 148647 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| ||||||||||||||||||| Sbjct: 139212 tcctcgagctcggctacaacttcctcttcacgg 139244 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Plus Query: 232 ggacgtggacgtgatgtggttccgtgacccgttcaagcacatctccatgggggcggacat 291 |||||||||| | |||||||||||||||||||| |||| || || |||| |||| |||| Sbjct: 130578 ggacgtggacatcctgtggttccgtgacccgttcgagcagatgtcgatggcggcgcacat 130637 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| |||||| |||||||||||| Sbjct: 152110 tcctcgagctcggctacaacctcctcttcacgg 152142
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 200 atccttgagctcggatacaacttcctcttcacgg 233 ||||| |||||||||||||||||||||||||||| Sbjct: 52734 atcctcgagctcggatacaacttcctcttcacgg 52767 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| ||||||||||||||||||| Sbjct: 71309 tcctcgagctcggctacaacttcctcttcacgg 71341 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| ||||||||||||||||||| Sbjct: 61906 tcctcgagctcggctacaacttcctcttcacgg 61938 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Plus Query: 232 ggacgtggacgtgatgtggttccgtgacccgttcaagcacatctccatgggggcggacat 291 |||||||||| | |||||||||||||||||||| |||| || || |||| |||| |||| Sbjct: 53272 ggacgtggacatcctgtggttccgtgacccgttcgagcagatgtcgatggcggcgcacat 53331 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| |||||| |||||||||||| Sbjct: 74804 tcctcgagctcggctacaacctcctcttcacgg 74836
>ref|NM_185177.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1447 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 207 agctcggatacaacttcctcttcacggacgt 237 ||||||| ||||||||||||||||||||||| Sbjct: 734 agctcggctacaacttcctcttcacggacgt 764
>dbj|AK105978.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F09, full insert sequence Length = 1474 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 207 agctcggatacaacttcctcttcacggacgt 237 ||||||| ||||||||||||||||||||||| Sbjct: 752 agctcggctacaacttcctcttcacggacgt 782
>dbj|AK104518.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D02, full insert sequence Length = 1433 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 207 agctcggatacaacttcctcttcacggacgt 237 ||||||| ||||||||||||||||||||||| Sbjct: 722 agctcggctacaacttcctcttcacggacgt 752
>dbj|AK071606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J20, full insert sequence Length = 1470 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 207 agctcggatacaacttcctcttcacggacgt 237 ||||||| ||||||||||||||||||||||| Sbjct: 748 agctcggctacaacttcctcttcacggacgt 778
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| ||||||||||||||||||| Sbjct: 4483 tcctcgagctcggctacaacttcctcttcacgg 4515 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| |||||| |||||||||||| Sbjct: 7978 tcctcgagctcggctacaacctcctcttcacgg 8010
>dbj|AK107508.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E08, full insert sequence Length = 729 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Plus Query: 232 ggacgtggacgtgatgtggttccgtgacccgttcaagcacatctccatgggggcggacat 291 |||||||||| | |||||||||||||||||||| |||| || || |||| |||| |||| Sbjct: 23 ggacgtggacatcctgtggttccgtgacccgttcgagcagatgtcgatggcggcgcacat 82
>ref|XM_493813.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 804 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 437 cacgaacaggacgtgttcaacctcatcaagc 467 ||||| ||||||||| ||||||||||||||| Sbjct: 529 cacgaccaggacgtgctcaacctcatcaagc 559
>ref|XM_468593.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1554 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 437 cacgaacaggacgtgttcaacctcatcaagc 467 ||||| ||||||||| ||||||||||||||| Sbjct: 1063 cacgaccaggacgtgctcaacctcatcaagc 1093
>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07, complete sequence Length = 87592 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 437 cacgaacaggacgtgttcaacctcatcaagc 467 ||||| ||||||||| ||||||||||||||| Sbjct: 55605 cacgaccaggacgtgctcaacctcatcaagc 55575
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 437 cacgaacaggacgtgttcaacctcatcaagc 467 ||||| ||||||||| ||||||||||||||| Sbjct: 60622 cacgaccaggacgtgctcaacctcatcaagc 60592
>ref|XM_387438.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07262.1) partial mRNA Length = 5421 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 gctcgaccacctcgtcatcgtc 46 |||||||||||||||||||||| Sbjct: 5350 gctcgaccacctcgtcatcgtc 5329
>ref|NM_028785.3| Mus musculus dedicator of cytokinesis 8 (Dock8), mRNA Length = 7810 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 cgtgttcaacctcatcaagca 468 ||||||||||||||||||||| Sbjct: 3326 cgtgttcaacctcatcaagca 3346
>gb|AC139711.4| Mus musculus BAC clone RP23-362F21 from chromosome 19, complete sequence Length = 230596 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 cgtgttcaacctcatcaagca 468 ||||||||||||||||||||| Sbjct: 21703 cgtgttcaacctcatcaagca 21683
>gb|AC132319.3| Mus musculus BAC clone RP24-258I12 from chromosome 19, complete sequence Length = 193053 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 cgtgttcaacctcatcaagca 468 ||||||||||||||||||||| Sbjct: 189914 cgtgttcaacctcatcaagca 189894
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 catcgtcaccatggacccggc 60 ||||||||||||||||||||| Sbjct: 1520716 catcgtcaccatggacccggc 1520696
>dbj|AK038316.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130095G14 product:inferred: human CLASP-5 {Homo sapiens}, full insert sequence Length = 4153 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 cgtgttcaacctcatcaagca 468 ||||||||||||||||||||| Sbjct: 408 cgtgttcaacctcatcaagca 428
>gb|BC030316.1| Mus musculus dedicator of cytokinesis 8, mRNA (cDNA clone IMAGE:5371956), complete cds Length = 3684 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 cgtgttcaacctcatcaagca 468 ||||||||||||||||||||| Sbjct: 317 cgtgttcaacctcatcaagca 337
>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011H15 Length = 130146 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tccatgggggcggacatcgcc 295 ||||||||||||||||||||| Sbjct: 51054 tccatgggggcggacatcgcc 51074
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 201 tccttgagctcggatacaacttcctcttcacgg 233 |||| |||||||| |||||| |||||||||||| Sbjct: 376 tcctcgagctcggctacaacctcctcttcacgg 408
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gctgctcgaccacctcgtcat 42 ||||||||||||||||||||| Sbjct: 18361 gctgctcgaccacctcgtcat 18381
>dbj|AK131180.1| Mus musculus mRNA for mFLJ00346 protein Length = 3778 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 cgtgttcaacctcatcaagca 468 ||||||||||||||||||||| Sbjct: 289 cgtgttcaacctcatcaagca 309
>dbj|AK120301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052H03, full insert sequence Length = 2582 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 tccatgggggcggacatcgcc 295 ||||||||||||||||||||| Sbjct: 136 tccatgggggcggacatcgcc 116
>dbj|AK119391.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-C10, full insert sequence Length = 3221 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gctgctcgaccacctcgtcat 42 ||||||||||||||||||||| Sbjct: 3143 gctgctcgaccacctcgtcat 3163
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 ggcgtggcgcggctgctcgac 31 ||||||||||||||||||||| Sbjct: 2466008 ggcgtggcgcggctgctcgac 2465988 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gccgggtgccagctcgtgca 87 |||||||||||||||||||| Sbjct: 2688479 gccgggtgccagctcgtgca 2688498
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctgctcgaccacctcgtcat 42 |||||||||||||||||||| Sbjct: 2775773 ctgctcgaccacctcgtcat 2775754
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 catcgtcaccatggacccgg 59 |||||||||||||||||||| Sbjct: 1066135 catcgtcaccatggacccgg 1066116
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cttcacggacgtggacgtga 245 |||||||||||||||||||| Sbjct: 3038278 cttcacggacgtggacgtga 3038259
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 cggcggcgtacgccgggtgc 76 |||||||||||||||||||| Sbjct: 57660 cggcggcgtacgccgggtgc 57641
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcatcgtcaccatggacc 56 |||||||||||||||||||| Sbjct: 3036079 cgtcatcgtcaccatggacc 3036098
>dbj|AP005896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0032C09 Length = 127263 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcatcgtcaccatggacc 56 |||||||||||||||||||| Sbjct: 82190 cgtcatcgtcaccatggacc 82209
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cctacagcctcggcaacttc 343 |||||||||||||||||||| Sbjct: 2853660 cctacagcctcggcaacttc 2853641 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,591,130 Number of Sequences: 3902068 Number of extensions: 2591130 Number of successful extensions: 47449 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46736 Number of HSP's gapped (non-prelim): 709 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
