ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9c23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483553.1| Oryza sativa (japonica cultivar-group), mRNA Length = 624 Score = 365 bits (184), Expect = 1e-97 Identities = 384/448 (85%), Gaps = 2/448 (0%) Strand = Plus / Plus Query: 184 ggaagaatcaaacaccacagggtcaaattgcacaagtgattgttgaatttctggaggtag 243 |||| |||||||| ||||| |||||||| |||||||||||||| || ||||| ||||||| Sbjct: 8 ggaaaaatcaaactccacaaggtcaaatagcacaagtgattgtggattttctagaggtag 67 Query: 244 ctgtcagctgcattgtcttcctcaaaggtttttatcccgctcgtgcatttgagaggagaa 303 ||||||| || |||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 68 ctgtcagttgtgttgtcttcctcaaaggcttctatcctcctcgtgcatttgagaggagaa 127 Query: 304 ggtacatgaatatagttgtccagaaagccgtgcacccccagcttgctgactatatccact 363 |||| |||||| |||| ||||||||||| ||||||||||| ||||| | |||||||||| Sbjct: 128 ggtatatgaatgtagtggtccagaaagcagtgcacccccaacttgccggttatatccact 187 Query: 364 ctgtgactactggccttctacctttcatacaaaagggactggttgagagggtcgtggtca 423 ||| ||| ||||||| || |||||||| || |||||| ||||||||||||| || |||| Sbjct: 188 ctgctacttctggcctactccctttcattcagaagggattggttgagagggttgtagtca 247 Query: 424 tcttccatgacaaagataacgtgccactggagaagtttgtgttcaagcttgcagtcaacc 483 ||||| | ||||||| | |||||| | |||||||||||||||||||||||||| |||| Sbjct: 248 tcttctacgacaaagcgcatgtgccagttgagaagtttgtgttcaagcttgcagttaacc 307 Query: 484 aatcctatggcttccgagttagaggagtccagcctggaatttgctctgcggggcgttctt 543 |||| |||||| ||| || |||||||| ||||||||||||| ||||||| | || ||||| Sbjct: 308 aatcttatggc-tccaagatagaggaggccagcctggaattcgctctgc-gagctttctt 365 Query: 544 gatcaaactgtccgtcgctgaacctctcacaaagccccttccatcagatagtagctggga 603 |||||||||| | || |||||||| || || | |||||||||||||| | |||||||| Sbjct: 366 gatcaaactggctgttgctgaaccccttactagaacccttccatcagatggcagctggga 425 Query: 604 gatcaccgcctacttccgatccctccct 631 |||| | || |||||||||||||||||| Sbjct: 426 gatcgctgcatacttccgatccctccct 453
>gb|AY110949.1| Zea mays CL12681_1 mRNA sequence Length = 903 Score = 161 bits (81), Expect = 3e-36 Identities = 165/193 (85%) Strand = Plus / Plus Query: 177 atggatcggaagaatcaaacaccacagggtcaaattgcacaagtgattgttgaatttctg 236 |||||||||||||||||||| || || |||||||| ||||| ||| |||| |||||||| Sbjct: 176 atggatcggaagaatcaaactcctcaaggtcaaatagcacaggtggttgtggaatttctt 235 Query: 237 gaggtagctgtcagctgcattgtcttcctcaaaggtttttatcccgctcgtgcatttgag 296 |||||||| |||||||||| |||||||||||||| || ||||| ||||||| |||||| Sbjct: 236 gaggtagcaatcagctgcatcgtcttcctcaaaggcttctatcctcctcgtgcctttgag 295 Query: 297 aggagaaggtacatgaatatagttgtccagaaagccgtgcacccccagcttgctgactat 356 |||||||||||||||||| | || ||||||||||| |||| || ||||| || |||| Sbjct: 296 aggagaaggtacatgaatgtggtggtccagaaagcactgcatcctgagcttactagctat 355 Query: 357 atccactctgtga 369 || |||||||||| Sbjct: 356 attcactctgtga 368 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 578 ccccttccatcagatagtagctgggagatcaccgcctacttccgatccctccc 630 ||||||||| ||||| ||||||||||| | |||||||||||||| |||||||| Sbjct: 575 ccccttccaccagatggtagctgggaggtgaccgcctacttccggtccctccc 627 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Plus Query: 453 gagaagtttgtgttcaagcttgcagtcaacca 484 |||||||| || |||||||||||||||||||| Sbjct: 452 gagaagttcgtcttcaagcttgcagtcaacca 483
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 133 bits (67), Expect = 8e-28 Identities = 147/171 (85%), Gaps = 2/171 (1%) Strand = Plus / Minus Query: 397 agggactggttgagagggtcgtggtcatcttccatgacaaagataacgtgccactggaga 456 ||||| ||||||||||||| || ||||||||| | ||||||| | |||||| | |||| Sbjct: 26923293 agggattggttgagagggttgtagtcatcttctacgacaaagcgcatgtgccagttgaga 26923234 Query: 457 agtttgtgttcaagcttgcagtcaaccaatcctatggcttccgagttagaggagtccagc 516 |||||||||||||||||||||| |||||||| |||||| ||| || |||||||| ||||| Sbjct: 26923233 agtttgtgttcaagcttgcagttaaccaatcttatggc-tccaagatagaggaggccagc 26923175 Query: 517 ctggaatttgctctgcggggcgttcttgatcaaactgtccgtcgctgaacc 567 |||||||| ||||||| | || ||||||||||||||| | || |||||||| Sbjct: 26923174 ctggaattcgctctgc-gagctttcttgatcaaactggctgttgctgaacc 26923125 Score = 107 bits (54), Expect = 5e-20 Identities = 93/106 (87%) Strand = Plus / Minus Query: 286 gtgcatttgagaggagaaggtacatgaatatagttgtccagaaagccgtgcacccccagc 345 |||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||| | Sbjct: 26923928 gtgcatttgagaggagaaggtatatgaatgtagtggtccagaaagcagtgcacccccaac 26923869 Query: 346 ttgctgactatatccactctgtgactactggccttctacctttcat 391 |||| | ||||||||||||| ||| ||||||| || |||||||| Sbjct: 26923868 ttgccggttatatccactctgctacttctggcctactccctttcat 26923823 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 204 ggtcaaattgcacaagtgattgttgaatttctggaggtagctgtcagctgcattgtcttc 263 |||||||| |||||||||||||| || ||||| |||||||||||||| || |||||||| Sbjct: 26924113 ggtcaaatagcacaagtgattgtggattttctagaggtagctgtcagttgtgttgtcttc 26924054 Query: 264 ctcaaaggtttttatcc 280 |||||||| || ||||| Sbjct: 26924053 ctcaaaggcttctatcc 26924037 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 596 agctgggagatcaccgcctacttccgatccctccct 631 |||||||||||| | || |||||||||||||||||| Sbjct: 26922981 agctgggagatcgctgcatacttccgatccctccct 26922946
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 133 bits (67), Expect = 8e-28 Identities = 147/171 (85%), Gaps = 2/171 (1%) Strand = Plus / Minus Query: 397 agggactggttgagagggtcgtggtcatcttccatgacaaagataacgtgccactggaga 456 ||||| ||||||||||||| || ||||||||| | ||||||| | |||||| | |||| Sbjct: 24693 agggattggttgagagggttgtagtcatcttctacgacaaagcgcatgtgccagttgaga 24634 Query: 457 agtttgtgttcaagcttgcagtcaaccaatcctatggcttccgagttagaggagtccagc 516 |||||||||||||||||||||| |||||||| |||||| ||| || |||||||| ||||| Sbjct: 24633 agtttgtgttcaagcttgcagttaaccaatcttatggc-tccaagatagaggaggccagc 24575 Query: 517 ctggaatttgctctgcggggcgttcttgatcaaactgtccgtcgctgaacc 567 |||||||| ||||||| | || ||||||||||||||| | || |||||||| Sbjct: 24574 ctggaattcgctctgc-gagctttcttgatcaaactggctgttgctgaacc 24525 Score = 107 bits (54), Expect = 5e-20 Identities = 93/106 (87%) Strand = Plus / Minus Query: 286 gtgcatttgagaggagaaggtacatgaatatagttgtccagaaagccgtgcacccccagc 345 |||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||| | Sbjct: 25328 gtgcatttgagaggagaaggtatatgaatgtagtggtccagaaagcagtgcacccccaac 25269 Query: 346 ttgctgactatatccactctgtgactactggccttctacctttcat 391 |||| | ||||||||||||| ||| ||||||| || |||||||| Sbjct: 25268 ttgccggttatatccactctgctacttctggcctactccctttcat 25223 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 204 ggtcaaattgcacaagtgattgttgaatttctggaggtagctgtcagctgcattgtcttc 263 |||||||| |||||||||||||| || ||||| |||||||||||||| || |||||||| Sbjct: 25513 ggtcaaatagcacaagtgattgtggattttctagaggtagctgtcagttgtgttgtcttc 25454 Query: 264 ctcaaaggtttttatcc 280 |||||||| || ||||| Sbjct: 25453 ctcaaaggcttctatcc 25437 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 596 agctgggagatcaccgcctacttccgatccctccct 631 |||||||||||| | || |||||||||||||||||| Sbjct: 24381 agctgggagatcgctgcatacttccgatccctccct 24346
>gb|AF457073.1| HIV-1 isolate 99KE_KSM4015 from Kenya, partial genome Length = 8802 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 tcaaacaccacagggtcaaattgcac 216 ||||||||||||||||||||| |||| Sbjct: 6600 tcaaacaccacagggtcaaatggcac 6625
>gb|AC007780.10| Homo sapiens chromosome 17, clone CTD-2004N4, complete sequence Length = 161492 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 579 cccttccatcagatagtagctgggagatc 607 ||||| || |||||||||||||||||||| Sbjct: 16715 ccctttcagcagatagtagctgggagatc 16743
>gb|AC146817.10| Medicago truncatula clone mth2-8c19, complete sequence Length = 114343 Score = 40.1 bits (20), Expect = 8.8 Identities = 47/56 (83%) Strand = Plus / Plus Query: 438 gataacgtgccactggagaagtttgtgttcaagcttgcagtcaaccaatcctatgg 493 ||||| || ||||| ||||| ||||| |||||||||||| | |||| |||||||| Sbjct: 72828 gataatgttccactcgagaaatttgttttcaagcttgcaatgaacctctcctatgg 72883
>ref|XM_552525.1| Anopheles gambiae str. PEST ENSANGP00000029072 (ENSANGG00000011678), partial mRNA Length = 3296 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ttgtccagaaagccgtgcac 338 |||||||||||||||||||| Sbjct: 1774 ttgtccagaaagccgtgcac 1755 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,622,616 Number of Sequences: 3902068 Number of extensions: 6622616 Number of successful extensions: 114726 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114694 Number of HSP's gapped (non-prelim): 25 length of query: 646 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 623 effective length of database: 17,143,297,704 effective search space: 10680274469592 effective search space used: 10680274469592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
