No.
Definition
Score (bits)
E Value
1 gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full...
615
e-173
2 ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA
216
6e-53
3 gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a...
192
8e-46
4 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
161
3e-36
5 dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D...
161
3e-36
6 dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon...
117
4e-23
7 gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl...
46
0.12
8 gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp...
46
0.12
9 gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple...
46
0.12
10 gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,...
46
0.12
11 gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp...
42
1.9
12 gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly...
42
1.9
13 gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s...
42
1.9
14 gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome...
42
1.9
15 gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
42
1.9
16 gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co...
40
7.3
17 gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydroge...
40
7.3
18 gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s...
40
7.3
19 emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c...
40
7.3
20 gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, com...
40
7.3
21 gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple...
40
7.3
22 gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g...
40
7.3
23 gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
40
7.3
24 emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surroundi...
40
7.3
>ref|XM_464784.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 660
Score = 216 bits (109), Expect = 6e-53
Identities = 279/336 (83%), Gaps = 6/336 (1%)
Strand = Plus / Plus
Query: 206 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 265
|||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264
Query: 266 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 325
|| ||||| |||||||| || ||||| ||| ||||||| | ||| | ||||||
Sbjct: 265 acgacaccaagcacccccagcacacc------tgatgtccctgaagttccgacaaagcat 318
Query: 326 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 385
| ||| |||||||||||| | ||||||||| || ||||| | ||| || ||||||||
Sbjct: 319 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 378
Query: 386 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 445
|||||||||||| |||| ||||||||| | ||| |||| |||||| |||| |||||||
Sbjct: 379 gggtcccttggcgacattggcaagacactcggtactgcttgcagtttgatcactggcaag 438
Query: 446 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggcgccctg 505
||||||| |||| | ||||||||||| ||||||||| |||||||||||| ||| || |||
Sbjct: 439 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactggtgctctg 498
Query: 506 atacgcgagggggcagctgcatacctcaactccatt 541
| |||||||| ||||||||||||||||||||||||
Sbjct: 499 ctccgcgagggagcagctgcatacctcaactccatt 534
Score = 111 bits (56), Expect = 2e-21
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 6 gcaaggttcttctgntgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 65
|||||||||||||| | |||| |||| |||||||||| |||| |||||||| |||||||
Sbjct: 8 gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 67
Query: 66 gcctgggagagttgcatgagcagaagacctactcttcttctac 108
|||||||||||||| ||| |||||||||||||||||| ||||
Sbjct: 68 gcctgggagagttgtctgaacagaagacctactcttctactac 110
Score = 93.7 bits (47), Expect = 6e-16
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 191 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 250
|||||||| || || ||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225
Query: 251 acgccatcttacggcactacacc 273
|| ||||||||||||||||||||
Sbjct: 226 acaccatcttacggcactacacc 248
Score = 40.1 bits (20), Expect = 7.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 167 acaccgacaccaacttacggtactacaccaac 198
||||| |||||| ||||||| |||||||||||
Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251
>gb|AY568677.1 | Oryza sativa (japonica cultivar-group) proline- and threonine-rich
protein mRNA, complete cds
Length = 902
Score = 192 bits (97), Expect = 8e-46
Identities = 276/336 (82%), Gaps = 6/336 (1%)
Strand = Plus / Plus
Query: 206 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 265
|||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328
Query: 266 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 325
|| ||||| ||| |||| || ||||| ||| ||||||| | ||| | ||||||
Sbjct: 329 acgacaccaagctcccccagcacacc------tgatgtccctgaagttccgacaaagcat 382
Query: 326 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 385
| ||| |||||||||||| | ||||||||| || ||||| | ||| || ||||||||
Sbjct: 383 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 442
Query: 386 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 445
|||||||||||| |||| |||| |||| | | | |||| |||||| |||| |||||||
Sbjct: 443 gggtcccttggcgacattggcatgacactcgatactgcttgcagtttgatcactggcaag 502
Query: 446 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggcgccctg 505
||||||| |||| | ||||||||||| ||||||||| |||||||||||| ||| || |||
Sbjct: 503 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactggtgctctg 562
Query: 506 atacgcgagggggcagctgcatacctcaactccatt 541
| |||||||| ||||||||||||||||||||||||
Sbjct: 563 ctccgcgagggagcagctgcatacctcaactccatt 598
Score = 111 bits (56), Expect = 2e-21
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 6 gcaaggttcttctgntgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 65
|||||||||||||| | |||| |||| |||||||||| |||| |||||||| |||||||
Sbjct: 72 gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 131
Query: 66 gcctgggagagttgcatgagcagaagacctactcttcttctac 108
|||||||||||||| ||| |||||||||||||||||| ||||
Sbjct: 132 gcctgggagagttgtctgaacagaagacctactcttctactac 174
Score = 93.7 bits (47), Expect = 6e-16
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 191 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 250
|||||||| || || ||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289
Query: 251 acgccatcttacggcactacacc 273
|| ||||||||||||||||||||
Sbjct: 290 acaccatcttacggcactacacc 312
Score = 40.1 bits (20), Expect = 7.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 167 acaccgacaccaacttacggtactacaccaac 198
||||| |||||| ||||||| |||||||||||
Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 161 bits (81), Expect = 3e-36
Identities = 165/193 (85%)
Strand = Plus / Minus
Query: 349 ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 408
||||||||| || ||||| | ||| || |||||||||||||||||||| |||| |||||
Sbjct: 7323474 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 7323415
Query: 409 gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 468
|||| | ||| |||| |||||| |||| |||||||||||||| |||| | ||||||||
Sbjct: 7323414 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 7323355
Query: 469 actctcaaacactagaactgatggtattggcgccctgatacgcgagggggcagctgcata 528
||| ||||||||| |||||||||||| ||| || ||| | |||||||| |||||||||||
Sbjct: 7323354 actttcaaacactggaactgatggtactggtgctctgctccgcgagggagcagctgcata 7323295
Query: 529 cctcaactccatt 541
|||||||||||||
Sbjct: 7323294 cctcaactccatt 7323282
Score = 111 bits (56), Expect = 2e-21
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 6 gcaaggttcttctgntgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 65
|||||||||||||| | |||| |||| |||||||||| |||| |||||||| |||||||
Sbjct: 7324201 gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 7324142
Query: 66 gcctgggagagttgcatgagcagaagacctactcttcttctac 108
|||||||||||||| ||| |||||||||||||||||| ||||
Sbjct: 7324141 gcctgggagagttgtctgaacagaagacctactcttctactac 7324099
Score = 93.7 bits (47), Expect = 6e-16
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 191 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 250
|||||||| || || ||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676
Query: 251 acgccatcttacggcactacacc 273
|| ||||||||||||||||||||
Sbjct: 7323675 acaccatcttacggcactacacc 7323653
Score = 93.7 bits (47), Expect = 6e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 206 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 265
|||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637
Query: 266 actacaccgagcaccccaagtacacct 292
|| ||||| |||||||| || ||||||
Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610
Score = 40.1 bits (20), Expect = 7.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 167 acaccgacaccaacttacggtactacaccaac 198
||||| |||||| ||||||| |||||||||||
Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650
>dbj|AP005756.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0035N08
Length = 136267
Score = 161 bits (81), Expect = 3e-36
Identities = 165/193 (85%)
Strand = Plus / Minus
Query: 349 ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 408
||||||||| || ||||| | ||| || |||||||||||||||||||| |||| |||||
Sbjct: 99282 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 99223
Query: 409 gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 468
|||| | ||| |||| |||||| |||| |||||||||||||| |||| | ||||||||
Sbjct: 99222 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 99163
Query: 469 actctcaaacactagaactgatggtattggcgccctgatacgcgagggggcagctgcata 528
||| ||||||||| |||||||||||| ||| || ||| | |||||||| |||||||||||
Sbjct: 99162 actttcaaacactggaactgatggtactggtgctctgctccgcgagggagcagctgcata 99103
Query: 529 cctcaactccatt 541
|||||||||||||
Sbjct: 99102 cctcaactccatt 99090
Score = 111 bits (56), Expect = 2e-21
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 6 gcaaggttcttctgntgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 65
|||||||||||||| | |||| |||| |||||||||| |||| |||||||| |||||||
Sbjct: 100009 gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 99950
Query: 66 gcctgggagagttgcatgagcagaagacctactcttcttctac 108
|||||||||||||| ||| |||||||||||||||||| ||||
Sbjct: 99949 gcctgggagagttgtctgaacagaagacctactcttctactac 99907
Score = 93.7 bits (47), Expect = 6e-16
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 191 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 250
|||||||| || || ||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484
Query: 251 acgccatcttacggcactacacc 273
|| ||||||||||||||||||||
Sbjct: 99483 acaccatcttacggcactacacc 99461
Score = 93.7 bits (47), Expect = 6e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 206 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 265
|||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445
Query: 266 actacaccgagcaccccaagtacacct 292
|| ||||| |||||||| || ||||||
Sbjct: 99444 acgacaccaagcacccccagcacacct 99418
Score = 40.1 bits (20), Expect = 7.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 167 acaccgacaccaacttacggtactacaccaac 198
||||| |||||| ||||||| |||||||||||
Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458
>emb|AJ342722.1 |HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R
Length = 788
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 55 ctcctgcaggagcctgggag 74
||||||||||||||||||||
Sbjct: 467 ctcctgcaggagcctgggag 448
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,679,586
Number of Sequences: 3902068
Number of extensions: 3679586
Number of successful extensions: 62887
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62785
Number of HSP's gapped (non-prelim): 87
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)