ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9c18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precurs... 30 3.9

>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = +2

Query: 20  PGXGSC*YKPNWTKLTCRQPIELACHSKISSVEFILYLA*AKCFWLKHEAFSRC*YSIHG 199
           P  G C  +P W   TCR+P +  C++  +  E        K  W       RC  + HG
Sbjct: 143 PATGVCHCEPGWWSSTCRRPCQ--CNTAAARCEQATGACVCKPGWWGRRCSFRC--NCHG 198

Query: 200 CYLEQ 214
              EQ
Sbjct: 199 SPCEQ 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,949,557
Number of Sequences: 219361
Number of extensions: 1087729
Number of successful extensions: 1981
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1979
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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