ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9c18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
2dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
3dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
4gb|AY109589.1| Zea mays CL7475_1 mRNA sequence 101 2e-18
5ref|NM_190125.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
6ref|XM_415002.1| PREDICTED: Gallus gallus sodium-calcium exchang... 48 0.028
7gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, co... 48 0.028
8gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, comp... 44 0.44
9gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete... 44 0.44
10gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, com... 44 0.44
11gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, c... 42 1.8
12gb|AC110217.10| Mus musculus chromosome 1, clone RP24-510P18, co... 42 1.8
13gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosom... 42 1.8
14gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome... 42 1.8
15emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on ch... 42 1.8
16gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, co... 42 1.8
17gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 42 1.8
18gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, compl... 42 1.8
19gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 42 1.8
20emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of... 42 1.8
21ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1... 42 1.8
22ref|NM_016173.3| Homo sapiens HemK methyltransferase family memb... 42 1.8
23gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137... 42 1.8
24gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complet... 42 1.8
25emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete s... 42 1.8
26gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, comple... 42 1.8
27gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA... 42 1.8
28emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on ch... 42 1.8
29emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (... 42 1.8
30emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-5... 42 1.8
31emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on ch... 42 1.8
32emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-2... 42 1.8
33dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 42 1.8
34ref|NM_186230.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.9
35gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, com... 40 6.9
36gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, co... 40 6.9
37ref|XM_817863.1| Trypanosoma brucei TREU927 hypothetical protein... 40 6.9
38gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 6.9
39gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete se... 40 6.9
40emb|BX908795.10| Zebrafish DNA sequence from clone DKEY-92J12 in... 40 6.9
41emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in ... 40 6.9
42dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, c... 40 6.9
43dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, c... 40 6.9
44gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.9
45gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Canc... 40 6.9
46ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.9
47ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.9
48ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.9
49gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromo... 40 6.9
50dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
51gb|AC064871.6| Homo sapiens BAC clone RP11-598C21 from 2, comple... 40 6.9
52gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Canc... 40 6.9
53gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 40 6.9
54gb|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y... 40 6.9
55gb|AC023271.11| Homo sapiens BAC clone RP11-96E8 from 2, complet... 40 6.9
56gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y... 40 6.9
57dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
58dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clo... 40 6.9
59emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15 40 6.9
60emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chro... 40 6.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  149 bits (75), Expect = 1e-32
 Identities = 117/130 (90%), Gaps = 2/130 (1%)
 Strand = Plus / Plus

                                                                            
Query: 383      tttatccttcagtttatagcttgcatctaggtggctcaggctctaaggagagcctgtgcc 442
                |||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 38047170 tttatcttccagtttatagcttgcatctaggtggttaaggctctaaggagagcctgtgcc 38047229

                                                                            
Query: 443      cctcatcagagacaggttc--aggagtgctaatgttagtttttggcacttggcactacct 500
                |||  ||||||||||||||  ||||||||||||||| ||||||||||||| |  ||||||
Sbjct: 38047230 ccttgtcagagacaggttcagaggagtgctaatgtttgtttttggcacttagtgctacct 38047289

                          
Query: 501      cctgccattt 510
                |||| |||||
Sbjct: 38047290 cctgtcattt 38047299



 Score =  125 bits (63), Expect = 2e-25
 Identities = 161/191 (84%), Gaps = 2/191 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1        ctaacaatcaagcatggccccagggnaggggtcatgctgatacaagccaaattggacaaa 60
                |||||||||||||||   ||||||| |||| ||||||||||||| ||||| |||||||||
Sbjct: 38046816 ctaacaatcaagcattaacccaggg-agggttcatgctgatacaggccaa-ttggacaaa 38046873

                                                                            
Query: 61       actgacatgtagacaaccaattgagctagcatgccactccaaaatttcatcagtggaatt 120
                | |||||| || |||||  || |||| || |||||||| ||||||||| |||||||||| 
Sbjct: 38046874 agtgacatctaaacaactgatcgagcaagaatgccacttcaaaatttcgtcagtggaatc 38046933

                                                                            
Query: 121      catactgtatttagcttaggccaagtgcttctggctgaagcatgaggcatttagcagatg 180
                 ||| |||||||||| ||||||| |||||||||| |||||||  |  |||||||||||  
Sbjct: 38046934 tatattgtatttagcataggccatgtgcttctggatgaagcacaaaccatttagcagacc 38046993

                           
Query: 181      ctaatattcta 191
                ||||| |||||
Sbjct: 38046994 ctaatcttcta 38047004
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score =  149 bits (75), Expect = 1e-32
 Identities = 117/130 (90%), Gaps = 2/130 (1%)
 Strand = Plus / Plus

                                                                          
Query: 383    tttatccttcagtttatagcttgcatctaggtggctcaggctctaaggagagcctgtgcc 442
              |||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 128114 tttatcttccagtttatagcttgcatctaggtggttaaggctctaaggagagcctgtgcc 128173

                                                                          
Query: 443    cctcatcagagacaggttc--aggagtgctaatgttagtttttggcacttggcactacct 500
              |||  ||||||||||||||  ||||||||||||||| ||||||||||||| |  ||||||
Sbjct: 128174 ccttgtcagagacaggttcagaggagtgctaatgtttgtttttggcacttagtgctacct 128233

                        
Query: 501    cctgccattt 510
              |||| |||||
Sbjct: 128234 cctgtcattt 128243



 Score =  125 bits (63), Expect = 2e-25
 Identities = 161/191 (84%), Gaps = 2/191 (1%)
 Strand = Plus / Plus

                                                                          
Query: 1      ctaacaatcaagcatggccccagggnaggggtcatgctgatacaagccaaattggacaaa 60
              |||||||||||||||   ||||||| |||| ||||||||||||| ||||| |||||||||
Sbjct: 127760 ctaacaatcaagcattaacccaggg-agggttcatgctgatacaggccaa-ttggacaaa 127817

                                                                          
Query: 61     actgacatgtagacaaccaattgagctagcatgccactccaaaatttcatcagtggaatt 120
              | |||||| || |||||  || |||| || |||||||| ||||||||| |||||||||| 
Sbjct: 127818 agtgacatctaaacaactgatcgagcaagaatgccacttcaaaatttcgtcagtggaatc 127877

                                                                          
Query: 121    catactgtatttagcttaggccaagtgcttctggctgaagcatgaggcatttagcagatg 180
               ||| |||||||||| ||||||| |||||||||| |||||||  |  |||||||||||  
Sbjct: 127878 tatattgtatttagcataggccatgtgcttctggatgaagcacaaaccatttagcagacc 127937

                         
Query: 181    ctaatattcta 191
              ||||| |||||
Sbjct: 127938 ctaatcttcta 127948
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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score =  149 bits (75), Expect = 1e-32
 Identities = 117/130 (90%), Gaps = 2/130 (1%)
 Strand = Plus / Plus

                                                                         
Query: 383   tttatccttcagtttatagcttgcatctaggtggctcaggctctaaggagagcctgtgcc 442
             |||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 15204 tttatcttccagtttatagcttgcatctaggtggttaaggctctaaggagagcctgtgcc 15263

                                                                         
Query: 443   cctcatcagagacaggttc--aggagtgctaatgttagtttttggcacttggcactacct 500
             |||  ||||||||||||||  ||||||||||||||| ||||||||||||| |  ||||||
Sbjct: 15264 ccttgtcagagacaggttcagaggagtgctaatgtttgtttttggcacttagtgctacct 15323

                       
Query: 501   cctgccattt 510
             |||| |||||
Sbjct: 15324 cctgtcattt 15333



 Score =  125 bits (63), Expect = 2e-25
 Identities = 161/191 (84%), Gaps = 2/191 (1%)
 Strand = Plus / Plus

                                                                         
Query: 1     ctaacaatcaagcatggccccagggnaggggtcatgctgatacaagccaaattggacaaa 60
             |||||||||||||||   ||||||| |||| ||||||||||||| ||||| |||||||||
Sbjct: 14850 ctaacaatcaagcattaacccaggg-agggttcatgctgatacaggccaa-ttggacaaa 14907

                                                                         
Query: 61    actgacatgtagacaaccaattgagctagcatgccactccaaaatttcatcagtggaatt 120
             | |||||| || |||||  || |||| || |||||||| ||||||||| |||||||||| 
Sbjct: 14908 agtgacatctaaacaactgatcgagcaagaatgccacttcaaaatttcgtcagtggaatc 14967

                                                                         
Query: 121   catactgtatttagcttaggccaagtgcttctggctgaagcatgaggcatttagcagatg 180
              ||| |||||||||| ||||||| |||||||||| |||||||  |  |||||||||||  
Sbjct: 14968 tatattgtatttagcataggccatgtgcttctggatgaagcacaaaccatttagcagacc 15027

                        
Query: 181   ctaatattcta 191
             ||||| |||||
Sbjct: 15028 ctaatcttcta 15038
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>gb|AY109589.1| Zea mays CL7475_1 mRNA sequence
          Length = 1284

 Score =  101 bits (51), Expect = 2e-18
 Identities = 100/117 (85%), Gaps = 2/117 (1%)
 Strand = Plus / Minus

                                                                       
Query: 390 ttcagtttatagcttgcatctaggtggctcaggctctaaggagagcctgtgcccctcatc 449
           ||||||| |||||||||||||||||||   |||||||||||||||||||||||||| |||
Sbjct: 557 ttcagttgatagcttgcatctaggtggtcaaggctctaaggagagcctgtgcccctaatc 498

                                                                    
Query: 450 agagacaggttc--aggagtgctaatgttagtttttggcacttggcactacctcctg 504
           ||| ||||||||  || |||||||||||| |      || |||||||||||||||||
Sbjct: 497 agacacaggttcagagtagtgctaatgtttgnnnnnagcccttggcactacctcctg 441



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 32  tcatgctgatacaagccaaattggacaa 59
           |||||||||||| || ||||||||||||
Sbjct: 830 tcatgctgatactagtcaaattggacaa 803
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>ref|NM_190125.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 930

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 93/109 (85%), Gaps = 2/109 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaacaatcaagcatggccccagggnaggggtcatgctgatacaagccaaattggacaaa 60
           |||||||||||||||   ||||||| |||| ||||||||||||| ||||| |||||||||
Sbjct: 812 ctaacaatcaagcattaacccaggg-agggttcatgctgatacaggccaa-ttggacaaa 869

                                                            
Query: 61  actgacatgtagacaaccaattgagctagcatgccactccaaaatttca 109
           | |||||| || |||||  || |||| || |||||||| ||||||||||
Sbjct: 870 agtgacatctaaacaactgatcgagcaagaatgccacttcaaaatttca 918
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>ref|XM_415002.1| PREDICTED: Gallus gallus sodium-calcium exchanger (NCX1), mRNA
          Length = 5274

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 141  ccaagtgcttctggctgaagcatg 164
            ||||||||||||||||||||||||
Sbjct: 2933 ccaagtgcttctggctgaagcatg 2956
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>gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, complete sequence
          Length = 122302

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 257   catactcacacacacgcctccccaccac 284
             |||||| |||||||||||||||||||||
Sbjct: 79234 catactaacacacacgcctccccaccac 79207



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 257   catactcacacacacgcctccccaccac 284
             |||||| |||||||||||||||||||||
Sbjct: 79140 catactaacacacacgcctccccaccac 79113
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>gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, complete sequence
          Length = 227600

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                   
Query: 263   cacacacacgcctccccaccaccaccagcaacttcaca 300
             |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 42372 cacacacaagcctccccacc-ccagcagcaacttcaca 42336
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>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence
          Length = 191191

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 278   ccaccaccaccagcaacttcac 299
             ||||||||||||||||||||||
Sbjct: 75327 ccaccaccaccagcaacttcac 75306
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>gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, complete sequence
          Length = 157284

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                    
Query: 263    cacacacacgcctccccaccaccaccagcaacttcaca 300
              |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 138671 cacacacaagcctccccacc-ccagcagcaacttcaca 138635
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>gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, complete sequence
          Length = 182311

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    agacaaccaattgagctagcatgcc 95
             |||||||||| ||||||||||||||
Sbjct: 20374 agacaaccaaatgagctagcatgcc 20398
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>gb|AC110217.10| Mus musculus chromosome 1, clone RP24-510P18, complete sequence
          Length = 132882

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   tcatcagtggaattcatactg 127
             |||||||||||||||||||||
Sbjct: 46356 tcatcagtggaattcatactg 46336
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>gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosome 1, complete sequence
          Length = 177367

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 107    tcatcagtggaattcatactg 127
              |||||||||||||||||||||
Sbjct: 175896 tcatcagtggaattcatactg 175876
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>gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome 14, complete sequence
          Length = 179789

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 143   aagtgcttctggctgaagcatgagg 167
             |||||||||||||| ||||||||||
Sbjct: 90853 aagtgcttctggctcaagcatgagg 90877
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>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the
             5' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB) and a CpG island, complete
             sequence
          Length = 182914

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 460   tcaggagtgctaatgttagtt 480
             |||||||||||||||||||||
Sbjct: 97510 tcaggagtgctaatgttagtt 97530
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>gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, complete sequence
          Length = 146338

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    agacaaccaattgagctagcatgcc 95
             |||||||||| ||||||||||||||
Sbjct: 80853 agacaaccaaatgagctagcatgcc 80877
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>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 282    caccaccagcaacttcacaac 302
              |||||||||||||||||||||
Sbjct: 106641 caccaccagcaacttcacaac 106661
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>gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, complete sequence
          Length = 192324

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 272    gcctccccaccaccaccagca 292
              |||||||||||||||||||||
Sbjct: 130584 gcctccccaccaccaccagca 130564
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>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   cagctgaccagtctataactt 246
             |||||||||||||||||||||
Sbjct: 57447 cagctgaccagtctataactt 57427
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>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184906

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   caccaccagcaacttcacaac 302
             |||||||||||||||||||||
Sbjct: 86724 caccaccagcaacttcacaac 86744
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>ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1P1) on chromosome 22
          Length = 20254

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   caccaccagcaacttcacaac 302
             |||||||||||||||||||||
Sbjct: 12430 caccaccagcaacttcacaac 12410
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>ref|NM_016173.3| Homo sapiens HemK methyltransferase family member 1 (HEMK1), mRNA
          Length = 5862

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 272  gcctccccaccaccaccagca 292
            |||||||||||||||||||||
Sbjct: 3833 gcctccccaccaccaccagca 3853
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>gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137J4 map 15q21.3, complete
             sequence
          Length = 114149

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   cctccccaccaccaccagcaa 293
             |||||||||||||||||||||
Sbjct: 72318 cctccccaccaccaccagcaa 72338
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>gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complete sequence
          Length = 175345

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 202    ttatctagagcaaataaaatt 222
              |||||||||||||||||||||
Sbjct: 128068 ttatctagagcaaataaaatt 128048
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>emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete sequence
          Length = 165790

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 211  gcaaataaaatttgacagctg 231
            |||||||||||||||||||||
Sbjct: 2994 gcaaataaaatttgacagctg 2974
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>gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, complete sequence
          Length = 198440

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 278   ccaccaccaccagcaacttcacaac 302
             |||||||||||| ||||||||||||
Sbjct: 81969 ccaccaccaccaccaacttcacaac 81945
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>gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA, complete cds
          Length = 5737

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 272  gcctccccaccaccaccagca 292
            |||||||||||||||||||||
Sbjct: 3758 gcctccccaccaccaccagca 3778
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>emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on chromosome 14, complete
              sequence
          Length = 201441

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 143    aagtgcttctggctgaagcatgagg 167
              |||||||||||||| ||||||||||
Sbjct: 116931 aagtgcttctggctcaagcatgagg 116907
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>emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (from clone DKFZp686I1369)
          Length = 5778

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 272  gcctccccaccaccaccagca 292
            |||||||||||||||||||||
Sbjct: 3971 gcctccccaccaccaccagca 3991
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>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   caccaccagcaacttcacaac 302
             |||||||||||||||||||||
Sbjct: 96743 caccaccagcaacttcacaac 96763
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>emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on chromosome 3, complete
            sequence
          Length = 25067

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 272  gcctccccaccaccaccagca 292
            |||||||||||||||||||||
Sbjct: 5316 gcctccccaccaccaccagca 5296
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>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   caccaccagcaacttcacaac 302
             |||||||||||||||||||||
Sbjct: 81511 caccaccagcaacttcacaac 81491
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>dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c23H5
          Length = 37769

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   caccaccagcaacttcacaac 302
             |||||||||||||||||||||
Sbjct: 20211 caccaccagcaacttcacaac 20191
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>ref|NM_186230.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3330

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 291  caacttcacaacaacatcct 310
            ||||||||||||||||||||
Sbjct: 3276 caacttcacaacaacatcct 3257
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>gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, complete sequence
          Length = 109297

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   cacacacgcctccccaccac 284
             ||||||||||||||||||||
Sbjct: 69316 cacacacgcctccccaccac 69297
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>gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, complete sequence
          Length = 232304

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   tctagagcaaataaaatttg 224
             ||||||||||||||||||||
Sbjct: 46507 tctagagcaaataaaatttg 46526
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>ref|XM_817863.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.6k15.3480)
           partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 248 atttccacgcatactcacacacac 271
           |||||||||||||| |||||||||
Sbjct: 130 atttccacgcatacacacacacac 107
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>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete
              sequence
          Length = 214125

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    agtctataacttcatttcca 254
              ||||||||||||||||||||
Sbjct: 126467 agtctataacttcatttcca 126448
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>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence
          Length = 102937

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   cctccccaccaccaccagca 292
             ||||||||||||||||||||
Sbjct: 13173 cctccccaccaccaccagca 13192
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>emb|BX908795.10| Zebrafish DNA sequence from clone DKEY-92J12 in linkage group 1, complete
              sequence
          Length = 142468

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    catactgtatttagcttagg 140
              ||||||||||||||||||||
Sbjct: 128956 catactgtatttagcttagg 128975
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>emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in linkage group 21,
             complete sequence
          Length = 242772

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   agcctgtgcccctcatcaga 452
             ||||||||||||||||||||
Sbjct: 54494 agcctgtgcccctcatcaga 54513
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>dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, complete sequences
          Length = 171989

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    tctagagcaaataaaatttg 224
              ||||||||||||||||||||
Sbjct: 142199 tctagagcaaataaaatttg 142180
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>dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, complete sequences
          Length = 182507

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   tctagagcaaataaaatttg 224
             ||||||||||||||||||||
Sbjct: 42114 tctagagcaaataaaatttg 42095
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 205      tctagagcaaataaaatttg 224
                ||||||||||||||||||||
Sbjct: 22698163 tctagagcaaataaaatttg 22698182
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>gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 173003

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    caacatcctgtgataacttc 321
              ||||||||||||||||||||
Sbjct: 111331 caacatcctgtgataacttc 111350
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>ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 1 (LOC440910), mRNA
          Length = 4157

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  accaccagcaacttcacaac 302
            ||||||||||||||||||||
Sbjct: 2537 accaccagcaacttcacaac 2556
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>ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
           variant 3 (LOC440910), mRNA
          Length = 439

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 accaccagcaacttcacaac 302
           ||||||||||||||||||||
Sbjct: 137 accaccagcaacttcacaac 156
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>ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 2 (LOC440910), mRNA
          Length = 4499

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  accaccagcaacttcacaac 302
            ||||||||||||||||||||
Sbjct: 2879 accaccagcaacttcacaac 2898
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>gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromosome y, complete
              sequence
          Length = 179557

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    tctagagcaaataaaatttg 224
              ||||||||||||||||||||
Sbjct: 112230 tctagagcaaataaaatttg 112249
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 291     caacttcacaacaacatcct 310
               ||||||||||||||||||||
Sbjct: 1718706 caacttcacaacaacatcct 1718687
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>gb|AC064871.6| Homo sapiens BAC clone RP11-598C21 from 2, complete sequence
          Length = 194197

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   ctgaagcatgaggcatttag 174
             ||||||||||||||||||||
Sbjct: 64207 ctgaagcatgaggcatttag 64226
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>gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194925

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   caacatcctgtgataacttc 321
             ||||||||||||||||||||
Sbjct: 36279 caacatcctgtgataacttc 36298
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>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    accaccagcaacttcacaac 302
              ||||||||||||||||||||
Sbjct: 113988 accaccagcaacttcacaac 114007
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>gb|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y, complete sequence
          Length = 171449

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    tctagagcaaataaaatttg 224
              ||||||||||||||||||||
Sbjct: 108163 tctagagcaaataaaatttg 108144
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>gb|AC023271.11| Homo sapiens BAC clone RP11-96E8 from 2, complete sequence
          Length = 106499

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   gcatttagcagatgctaata 186
             ||||||||||||||||||||
Sbjct: 52465 gcatttagcagatgctaata 52446
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>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence
          Length = 178377

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    tctagagcaaataaaatttg 224
              ||||||||||||||||||||
Sbjct: 141917 tctagagcaaataaaatttg 141898
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>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1606_D04
          Length = 92729

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   caacttcacaacaacatcct 310
             ||||||||||||||||||||
Sbjct: 60906 caacttcacaacaacatcct 60887
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>dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB1528A10, complete
             sequence
          Length = 34971

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   cacacacgcctccccaccac 284
             ||||||||||||||||||||
Sbjct: 20371 cacacacgcctccccaccac 20390
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>emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15
          Length = 2414

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  aacagttctttatccttcag 394
            ||||||||||||||||||||
Sbjct: 2207 aacagttctttatccttcag 2226
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>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete
              sequence
          Length = 191676

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    cacacacacgcctccccacc 282
              ||||||||||||||||||||
Sbjct: 104317 cacacacacgcctccccacc 104336


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,591,019
Number of Sequences: 3902068
Number of extensions: 5591019
Number of successful extensions: 129042
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 128806
Number of HSP's gapped (non-prelim): 227
length of query: 513
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 490
effective length of database: 17,143,297,704
effective search space: 8400215874960
effective search space used: 8400215874960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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