ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags8n18 |
|---|---|
| Clone Library Name | barley_pub |
>RLUB_BACSU (P35159) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 229 Score = 109 bits (272), Expect = 7e-24 Identities = 67/156 (42%), Positives = 97/156 (62%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 +RL KV+A AGVASR +EELI +GKV VNG V T KV S D I VNG ++ ++ P Sbjct: 2 ERLQKVIAHAGVASRSKAEELIKEGKVKVNGKVVTELGVKVTGS-DQIEVNGLKVEREEP 60 Query: 301 PKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLI 480 +YF + KP+G I ++ ++K ++ D+ K +P+ R++ +GRLD T+GL+ Sbjct: 61 --VYFLLYKPRGVISAAQDDKGR-KVVTDFFKN-------IPQ-RIYPIGRLDYDTSGLL 109 Query: 481 IVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 ++TNDGEFA K+ HP I K YV + G K+ L Sbjct: 110 LLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELL 145
>Y1370_MYCLE (O05668) Hypothetical RNA pseudouridine synthase ML1370 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 256 Score = 100 bits (250), Expect = 2e-21 Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 3/153 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K+L+ AG+ASRR +E+LI +G+V V+G + T+VD + V+G ++ Sbjct: 17 RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVVRVDGVKVVVD-DS 75 Query: 304 KLYFAVNKPKGYICSSGEEKS---VISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTG 474 +Y A+NKP+G + +++ V L++ ++G NK +LF VGRLD T G Sbjct: 76 LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRG-NK--------KLFHVGRLDADTEG 126 Query: 475 LIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 LI++TNDGE A ++ HPS ++K Y+ T+ GAV Sbjct: 127 LILLTNDGELAHRLMHPSHEVSKTYLATVKGAV 159
>Y1738_MYCBO (P65843) Hypothetical RNA pseudouridine synthase Mb1738 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 254 Score = 99.8 bits (247), Expect = 5e-21 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 3/160 (1%) Frame = +1 Query: 103 SRXHEPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNR 282 SR RL KVL+ AG+ASRR +E++I G+V V+G V T T+VD + V+G R Sbjct: 8 SREPRGIRLQKVLSQAGIASRRAAEKMIVDGRVEVDGHVVTELGTRVDPQVAVVRVDGAR 67 Query: 283 ISKKLPPKLYFAVNKPKGYICSSGEEKS---VISLLDDYLKGWNKLQPGVPKPRLFTVGR 453 + +Y A+NKP+G + +++ + L++ ++G KL F VGR Sbjct: 68 VVLD-DSLVYLALNKPRGMHSTMSDDRGRPCIGDLIERKVRGTKKL---------FHVGR 117 Query: 454 LDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 LD T GL+++TNDGE A ++ HPS + K Y+ T+ G+V Sbjct: 118 LDADTEGLMLLTNDGELAHRLMHPSHEVPKTYLATVTGSV 157
>Y1711_MYCTU (P65842) Hypothetical RNA pseudouridine synthase Rv1711/MT1751.1| (EC 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 254 Score = 99.8 bits (247), Expect = 5e-21 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 3/160 (1%) Frame = +1 Query: 103 SRXHEPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNR 282 SR RL KVL+ AG+ASRR +E++I G+V V+G V T T+VD + V+G R Sbjct: 8 SREPRGIRLQKVLSQAGIASRRAAEKMIVDGRVEVDGHVVTELGTRVDPQVAVVRVDGAR 67 Query: 283 ISKKLPPKLYFAVNKPKGYICSSGEEKS---VISLLDDYLKGWNKLQPGVPKPRLFTVGR 453 + +Y A+NKP+G + +++ + L++ ++G KL F VGR Sbjct: 68 VVLD-DSLVYLALNKPRGMHSTMSDDRGRPCIGDLIERKVRGTKKL---------FHVGR 117 Query: 454 LDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 LD T GL+++TNDGE A ++ HPS + K Y+ T+ G+V Sbjct: 118 LDADTEGLMLLTNDGELAHRLMHPSHEVPKTYLATVTGSV 157
>Y1464_AQUAE (O67444) Hypothetical RNA pseudouridine synthase aq_1464 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 249 Score = 99.0 bits (245), Expect = 9e-21 Identities = 59/155 (38%), Positives = 88/155 (56%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 R+ K L+ AGVASRR +E+LI +G+V VNG V + KV+ D + V+G + K Sbjct: 5 RINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKPV--KPQR 62 Query: 304 KLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLII 483 K Y +NKP Y+ G +++ +K +P+ R+F VGRLD T GL+I Sbjct: 63 KRYIILNKPCCYLTQLGRSPDGRKTIEELIKD-------IPE-RVFPVGRLDYNTEGLLI 114 Query: 484 VTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 +TNDGE A ++ HP + K Y+ ++G V +K L Sbjct: 115 LTNDGELANRILHPRYKLPKVYLALVEGKVDQKTL 149
>RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 386 Score = 90.9 bits (224), Expect = 3e-18 Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 ++L KVLA GV SRR E I +G+V VNGSV + Q +VD S D+I V+G+ I ++ Sbjct: 14 EKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQ-RVD-SHDAITVDGHLIRREEA 71 Query: 301 PKLYFAV---NKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 + V NKP+G +C+ + + ++ D P + R VGRLD+ TT Sbjct: 72 AESVRRVLIYNKPEGEVCTRDDPEGRPTIFDRL--------PRLRTGRWINVGRLDINTT 123 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 GL++ T DGE A ++ HPS + +EY V + G V Sbjct: 124 GLLLFTTDGELANRLMHPSYEMDREYAVRVRGEV 157
>Y554_AQUAE (O66829) Hypothetical RNA pseudouridine synthase aq_554 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 238 Score = 88.6 bits (218), Expect = 1e-17 Identities = 51/155 (32%), Positives = 88/155 (56%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K L+ + SR+ ++ELI +G+V V+G V + +V ++ + V G + K Sbjct: 2 RLDKYLSKSLHISRKEAKELIREGRVKVSGKVVKQAEYRVKEGEE-VEVEGKSVKPK--K 58 Query: 304 KLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLII 483 +Y + KPKGY+ ++ E+K S L+ ++ P +LF+ GRLDV GL++ Sbjct: 59 NVYLMLYKPKGYLSTTEEDKKYPSFLE-------LIREHFPSRKLFSAGRLDVDAEGLLL 111 Query: 484 VTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 +T+DGE A +++HP + KEY+V +D + + L Sbjct: 112 ITDDGELAHRLTHPKWKVEKEYIVRLDRDIGDEEL 146
>Y361_SYNY3 (Q55578) Hypothetical RNA pseudouridine synthase slr0361 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 249 Score = 88.2 bits (217), Expect = 2e-17 Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 +R+ K+L+ G+ASRR +EE+I G+V+VNG V K D +D + V+G +I Sbjct: 3 ERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGD-KADPQQDFLSVDGKQIKADNR 61 Query: 301 PK-LYFAVNKPKGYICSSGE---EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 P+ +Y VNKP+ + + + K+V+ LL L+ L P VGRLD + Sbjct: 62 PRDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHP---------VGRLDRNS 112 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 TG +++TNDGE +++HP ++ K Y V ++G Sbjct: 113 TGALLLTNDGELTLRLTHPRYHLPKTYDVWLEG 145
>RLUB_VIBPA (Q87NB7) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 312 Score = 84.3 bits (207), Expect = 2e-16 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 3/154 (1%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 ++L KVLA AG SRR E LI G+V+VNG V + D S + ++G+ +S K+ Sbjct: 3 EKLQKVLARAGHGSRREIESLIKSGRVSVNGVVAKLGERLEDESS-VVRIDGHIVSAKVQ 61 Query: 301 PKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 ++ A KP+G +C+ + + ++ D P + R +VGRLD T+ Sbjct: 62 EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRL--------PKIRGSRWISVGRLDANTS 113 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 GL++ T DGE A ++ HPS + +EY+V + G V Sbjct: 114 GLLLFTTDGELANRLMHPSRQVEREYLVRVFGEV 147
>RLUB_VIBVU (Q8D8C0) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 320 Score = 83.2 bits (204), Expect = 5e-16 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 3/156 (1%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 ++L KVLA AG SRR E LI G+V+VNG V + +++ + + ++G+ +S K Sbjct: 3 EKLQKVLARAGHGSRRELEALIKSGRVSVNGIVAKLGE-RLEDEQAVVRIDGHVVSVKAQ 61 Query: 301 PKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 ++ A KP+G +C+ + + ++ D P + R +VGRLD T+ Sbjct: 62 EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRL--------PKIRGSRWISVGRLDANTS 113 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHK 579 GL++ T DGE A ++ HPS + +EY+V + G V++ Sbjct: 114 GLLLFTTDGELANRLMHPSRQVEREYLVRVFGEVNE 149
>RLUB_VIBCH (Q9KSS7) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 321 Score = 82.4 bits (202), Expect = 9e-16 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 3/154 (1%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 ++L KVLA AG SRR E LI G+V+VNG V + +++ + ++G+ +S K Sbjct: 3 EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGE-RLEDDNAVVRIDGHVVSVKAQ 61 Query: 301 PKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 ++ A KP+G +C+ + + ++ D P + R +VGRLD T+ Sbjct: 62 EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRL--------PKIRGSRWISVGRLDANTS 113 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 GL++ T DGE A ++ HPS + +EY+V + G V Sbjct: 114 GLLLFTTDGELANRLMHPSRQVEREYLVRVFGDV 147
>RLUB_SALTY (Q8ZP51) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 291 Score = 81.6 bits (200), Expect = 2e-15 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 4/160 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD-SIYVNGNRISKKL 297 ++L KVLA AG SRR E +I G+V+V+G + T +V+++ I ++G+ IS K Sbjct: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIATLGD-RVEVTPGLKIRIDGHLISVKE 61 Query: 298 PPKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 + A KP+G +C+ + + ++ D P + R VGRLDV T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--------PKLRGARWIAVGRLDVNT 113 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 GL++ T DGE A ++ HPS + +EY V + G V + L Sbjct: 114 CGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDESKL 153
>RLUB_SALTI (Q8Z7D5) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 291 Score = 81.6 bits (200), Expect = 2e-15 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 4/160 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD-SIYVNGNRISKKL 297 ++L KVLA AG SRR E +I G+V+V+G + T +V+++ I ++G+ IS K Sbjct: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIATLGD-RVEVTPGLKIRIDGHLISVKE 61 Query: 298 PPKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 + A KP+G +C+ + + ++ D P + R VGRLDV T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--------PKLRGARWIAVGRLDVNT 113 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 GL++ T DGE A ++ HPS + +EY V + G V + L Sbjct: 114 CGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDESKL 153
>Y129_BORBU (O51155) Hypothetical RNA pseudouridine synthase BB0129 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 249 Score = 81.3 bits (199), Expect = 2e-15 Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISK--KL 297 R+ LA GV SRR EELI + V VN ++ KV + IY + K ++ Sbjct: 8 RVHVFLAEKGVGSRRFCEELIRKKLVRVNNTIAKLGD-KVTLGDRIIYKKQIFVFKDFQI 66 Query: 298 PPKLYFAVNKPKGYICSSGE---EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 ++Y A+NKP+ Y+CS+ + K ISL+ K R+F++GRLD + Sbjct: 67 NNRIYLALNKPRNYLCSNFDVDGRKLAISLVQPLFK-----------ERVFSIGRLDFKS 115 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVV 555 +GL++ TNDG+FA + HP + +EY++ Sbjct: 116 SGLLLFTNDGKFANDIIHPRQKVEREYII 144
>RLUB_XYLFT (Q87BI2) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 476 Score = 81.3 bits (199), Expect = 2e-15 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 2/158 (1%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRI--SKK 294 +RL KVLA AG+ SRR E+ I G + VNG + + S D I ++G S Sbjct: 27 ERLHKVLAQAGLGSRRALEQRISNGLIKVNGDIAQLGMSVK--SGDKIELDGRSFVASAL 84 Query: 295 LPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTG 474 P NKP+G + + + + ++ + P + R +GRLD+ TTG Sbjct: 85 TEPARVLIYNKPEGEVTTREDPEGRPTVFETL--------PVLKGARWIAIGRLDINTTG 136 Query: 475 LIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 L+++T DGE A + HPSS I +EYVV + ++H+ Sbjct: 137 LLLLTTDGELANAMMHPSSEIEREYVVRVRSPEGEEHV 174
>RLUB_XYLFA (Q9PAP2) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 476 Score = 81.3 bits (199), Expect = 2e-15 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 2/158 (1%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRI--SKK 294 +RL KVLA AG+ SRR E+ I G + VNG + + S D I ++G S Sbjct: 27 ERLHKVLAQAGLGSRRALEQRISNGLIKVNGDIAQLGMSVK--SGDKIELDGRSFVASAL 84 Query: 295 LPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTG 474 P NKP+G + + + + ++ + P + R +GRLD+ TTG Sbjct: 85 TEPARVLIYNKPEGEVTTREDPEGRPTVFETL--------PVLKGARWIAIGRLDINTTG 136 Query: 475 LIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 L+++T DGE A + HPSS I +EYVV + ++H+ Sbjct: 137 LLLLTTDGELANAMMHPSSEIEREYVVRVRSPEGEEHV 174
>Y544_RICPR (Q9ZD06) Hypothetical RNA pseudouridine synthase RP544 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 235 Score = 81.3 bits (199), Expect = 2e-15 Identities = 50/148 (33%), Positives = 83/148 (56%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RLAK+++ AGV SRR +E+LI GKV ++G +P T VD+S + I V+G I+ P Sbjct: 3 RLAKIISNAGVCSRRNAEKLIVGGKVKIDGITILSPATNVDMS-NQIEVSGRLINNTQKP 61 Query: 304 KLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLII 483 +L+ KP G I + + S ++ + + PR+ ++GRLD+ + GL++ Sbjct: 62 RLWI-YYKPVGLITTHKDPLSRKTVFEQL----------IGLPRVISIGRLDLNSEGLLL 110 Query: 484 VTNDGEFAQKVSHPSSNITKEYVVTIDG 567 +TN G+ A + P+S + + Y V G Sbjct: 111 LTNSGDLAHQFEMPASKLKRVYNVRAYG 138
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 80.9 bits (198), Expect = 3e-15 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 3/150 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDI-SKDSIYVNGNRI--SK 291 +RL KVLA AG+ SRR E+ I G + VNG+V QT + + S D I ++G S Sbjct: 28 ERLHKVLAQAGLGSRRALEQRIADGLIKVNGAVA---QTGMSVRSGDKIELDGRSFVASA 84 Query: 292 KLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 P NKP+G + + + + ++ + P + R +GRLD+ TT Sbjct: 85 LTEPSRVLIYNKPEGEVTTREDPEGRPTVFESL--------PVLKGSRWIAIGRLDINTT 136 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTI 561 GL+++T DGE A + HPS + +EYVV + Sbjct: 137 GLLLLTTDGELANAMMHPSYEVEREYVVRV 166
>RLUB_HAEIN (P45104) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 357 Score = 80.9 bits (198), Expect = 3e-15 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 5/158 (3%) Frame = +1 Query: 115 EPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQ-----TKVDISKDSIYVNGN 279 E ++L KVLA AG SRR E +I G+V+V G + T + V + D +N + Sbjct: 74 EGEKLQKVLARAGQGSRREIETMIAAGRVSVEGKIATLGDRIDVHSGVKVRIDGQIINLS 133 Query: 280 RISKKLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLD 459 K++ L + KP+G +C+ + + ++ D P + R VGRLD Sbjct: 134 HTQKEICRVLMYY--KPEGELCTRSDPEGRATVFDRL--------PRLTGSRWIAVGRLD 183 Query: 460 VATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 + T+GL++ T DGE A ++ HPS + +EY V + G V Sbjct: 184 INTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQV 221
>Y807_RICCN (Q92HG4) Hypothetical RNA pseudouridine synthase RC0807 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 230 Score = 80.5 bits (197), Expect = 3e-15 Identities = 54/148 (36%), Positives = 85/148 (57%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RLAK+++ AGV SRR +E+LI G+V V+G +P T VDIS + I V+G I+ P Sbjct: 3 RLAKIISNAGVCSRRDAEKLIVAGQVKVDGITILSPTTNVDIS-NQIEVSGTLINNIHKP 61 Query: 304 KLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLII 483 +L+ KP G I + + S ++ + L G PR+ ++GRLD+ + GL++ Sbjct: 62 RLWI-YYKPVGLITTHKDPLSRKTVFEQ-LTG---------LPRVISIGRLDLNSEGLLL 110 Query: 484 VTNDGEFAQKVSHPSSNITKEYVVTIDG 567 +TN G+ A++ PSS + + Y V G Sbjct: 111 LTNSGDLARQFELPSSRLKRVYHVRAYG 138
>RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 492 Score = 79.3 bits (194), Expect = 8e-15 Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 3/150 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDI-SKDSIYVNGNRI--SK 291 +RL KVLA AG+ SRR E+ I G + VNG+V QT + + S D I ++G S Sbjct: 28 ERLHKVLAQAGLGSRRALEQRIADGLIKVNGAVA---QTGMSVRSGDKIELDGRSFVASA 84 Query: 292 KLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 NKP+G + + + + ++ + P + R +GRLD+ TT Sbjct: 85 LTESSRVLVYNKPEGEVTTREDPEGRPTVFESL--------PALKGSRWIAIGRLDINTT 136 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTI 561 GL+++T DGE A + HPS + +EYVV + Sbjct: 137 GLLLLTTDGELANAMMHPSYEVEREYVVRV 166
>RLUB_YERPE (Q8ZEG0) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 318 Score = 79.3 bits (194), Expect = 8e-15 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 3/154 (1%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 ++L K+LA AG SRR E +I QG+V+V+G V I ++G+ +S K Sbjct: 3 EKLQKILARAGHGSRREIEAIIQQGRVSVDGKVSKLGDRVEVTQSTKIRLDGHLLSIKES 62 Query: 301 PK---LYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 + A KP+G +C+ + + ++ D P + R VGRLDV T+ Sbjct: 63 EENVCRVLAYYKPEGELCTRNDPEGRPTVFDRL--------PKLRGSRWVAVGRLDVNTS 114 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 GL++ T DGE A ++ HPS + +EY V + G + Sbjct: 115 GLLLFTTDGELANRLMHPSREVEREYAVRVFGQI 148
>RLUB_BUCAP (P42395) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 257 Score = 77.8 bits (190), Expect = 2e-14 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 4/159 (2%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRI----SK 291 ++ K+L+ G SRR E +I GK+++NG Q + I ++ +I +K Sbjct: 4 KIQKILSDLGYGSRRFIECMIKCGKISINGEKAIIGQYLNKKNPGEILIDKKKIIVKRNK 63 Query: 292 KLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 LP L + NKP G +C+ + + +++ D P + R +VGRLD+ T Sbjct: 64 NLPKVLIY--NKPIGEVCTRDDFQKRLTVFDKL--------PKLNLNRWVSVGRLDINTK 113 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 GL++ TNDG A K+ HP S I +EY + I G ++K + Sbjct: 114 GLLLFTNDGTLANKLMHPRSQIEREYNIRIFGEMNKNKI 152
>RLUB_PASMU (Q9CMY9) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 345 Score = 77.4 bits (189), Expect = 3e-14 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 4/162 (2%) Frame = +1 Query: 115 EPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD-SIYVNGNRISK 291 E ++L KVLA AG SRR E +I + +V+V+G + T ++D+ I ++G+ I+ Sbjct: 62 EGEKLQKVLARAGQGSRREIEAMIAENRVSVDGKIATLGD-RIDVHAGVKIRIDGHLINL 120 Query: 292 KLPPKLYFAV---NKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDV 462 K V KP+G +C+ + + ++ D P + R VGRLD+ Sbjct: 121 LHAQKEVCRVLMYYKPEGELCTRHDPEGRPTVFDRL--------PRLTGSRWIAVGRLDI 172 Query: 463 ATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 T+GL++ T DGE A ++ HPS + +EY V + G V + L Sbjct: 173 NTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQVDEAML 214
>RLUB_ECOL6 (Q8FHV4) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 291 Score = 77.4 bits (189), Expect = 3e-14 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 4/155 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD-SIYVNGNRISKKL 297 ++L KVLA AG SRR E +I G+V+V+G + +V+I+ I ++G+ IS + Sbjct: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGD-RVEITPGLKIRIDGHLISVRE 61 Query: 298 PPKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 + A KP+G +C+ + + ++ D P + R VGRLDV T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--------PKLRGARWIAVGRLDVNT 113 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 GL++ T DGE A ++ HPS + +EY V + G V Sbjct: 114 CGLLLFTTDGELANRLMHPSREVEREYAVRVFGQV 148
>RLUB_SHIFL (P59815) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 290 Score = 77.0 bits (188), Expect = 4e-14 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 4/155 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD-SIYVNGNRISKKL 297 ++L KVLA AG SRR E +I G+V+V+G + +V+++ I ++G+ IS + Sbjct: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGD-RVEVTPGLKIRIDGHLISVRE 61 Query: 298 PPKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 + A KP+G +C+ + + ++ D P + R VGRLDV T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--------PKLRGARWIAVGRLDVNT 113 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 GL++ T DGE A ++ HPS + +EY V + G V Sbjct: 114 CGLLLFTTDGELANRLMHPSREVEREYAVRVFGQV 148
>RLUB_ECO57 (Q8X4Q8) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 290 Score = 77.0 bits (188), Expect = 4e-14 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 4/155 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD-SIYVNGNRISKKL 297 ++L KVLA AG SRR E +I G+V+V+G + +V+++ I ++G+ IS + Sbjct: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGD-RVEVTPGLKIRIDGHLISVRE 61 Query: 298 PPKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 + A KP+G +C+ + + ++ D P + R VGRLDV T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--------PKLRGARWIAVGRLDVNT 113 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 GL++ T DGE A ++ HPS + +EY V + G V Sbjct: 114 CGLLLFTTDGELANRLMHPSREVEREYAVRVFGQV 148
>RLUB_BUCAI (P57369) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 250 Score = 77.0 bits (188), Expect = 4e-14 Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRIS-KKL 297 +++ K+L+ G SRR E +I G +++NG Q + + + I + G +S KK Sbjct: 3 EKIQKILSHLGYGSRRNIENMIKFGDISINGKKIVIGQRLNNKNIEVITIKGETVSIKKT 62 Query: 298 PPKLYFAV-NKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTG 474 K + NKP+G IC+ + K + D P + R ++GRLD+ T G Sbjct: 63 DFKTKIIIYNKPEGEICTRNDYKKRPIVFDKL--------PLLNIHRWISIGRLDINTRG 114 Query: 475 LIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHK 579 L++ TN+G A ++ HPS+ I +EY + + G ++K Sbjct: 115 LLLFTNNGNLANELMHPSNKIEREYYIRVFGKINK 149
>RLUB_ECOLI (P37765) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 291 Score = 77.0 bits (188), Expect = 4e-14 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 4/155 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD-SIYVNGNRISKKL 297 ++L KVLA AG SRR E +I G+V+V+G + +V+++ I ++G+ IS + Sbjct: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGD-RVEVTPGLKIRIDGHLISVRE 61 Query: 298 PPKLY---FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 + A KP+G +C+ + + ++ D P + R VGRLDV T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--------PKLRGARWIAVGRLDVNT 113 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 GL++ T DGE A ++ HPS + +EY V + G V Sbjct: 114 CGLLLFTTDGELANRLMHPSREVEREYAVRVFGQV 148
>RSUA_SHIFL (P0AA46) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 231 Score = 75.9 bits (185), Expect = 8e-14 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K +A SR + I +VTV+G + K+ D Y +GN ++++ P Sbjct: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 Query: 304 KLYFAVNKPKGYICSSGE--EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 + YF +NKP+GY+CS+ + +V+ LD+ + W +L GRLD+ TTGL Sbjct: 61 R-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AW----------KLHAAGRLDIDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 +++T+DG+++ +++ P + K Y+VT++ V Sbjct: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPV 140
>RSUA_ECOLI (P0AA43) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 231 Score = 75.9 bits (185), Expect = 8e-14 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K +A SR + I +VTV+G + K+ D Y +GN ++++ P Sbjct: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 Query: 304 KLYFAVNKPKGYICSSGE--EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 + YF +NKP+GY+CS+ + +V+ LD+ + W +L GRLD+ TTGL Sbjct: 61 R-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AW----------KLHAAGRLDIDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 +++T+DG+++ +++ P + K Y+VT++ V Sbjct: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPV 140
>RSUA_ECOL6 (P0AA44) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 231 Score = 75.9 bits (185), Expect = 8e-14 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K +A SR + I +VTV+G + K+ D Y +GN ++++ P Sbjct: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 Query: 304 KLYFAVNKPKGYICSSGE--EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 + YF +NKP+GY+CS+ + +V+ LD+ + W +L GRLD+ TTGL Sbjct: 61 R-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AW----------KLHAAGRLDIDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 +++T+DG+++ +++ P + K Y+VT++ V Sbjct: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPV 140
>RSUA_ECO57 (P0AA45) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 231 Score = 75.9 bits (185), Expect = 8e-14 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K +A SR + I +VTV+G + K+ D Y +GN ++++ P Sbjct: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 Query: 304 KLYFAVNKPKGYICSSGE--EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 + YF +NKP+GY+CS+ + +V+ LD+ + W +L GRLD+ TTGL Sbjct: 61 R-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AW----------KLHAAGRLDIDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 +++T+DG+++ +++ P + K Y+VT++ V Sbjct: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPV 140
>RSUA_SALTY (P65840) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 231 Score = 74.3 bits (181), Expect = 2e-13 Identities = 45/152 (29%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K +A SR + I +VTV+G + K+ + + ++ +GN ++++ P Sbjct: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGDIIKNAAFKL-LPEHAVAYDGNPLAQQHGP 60 Query: 304 KLYFAVNKPKGYICSSGE--EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 + YF +NKP+GY+CS+ + +V+ LD+ + +L GRLD+ TTGL Sbjct: 61 R-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAY-----------KLHAAGRLDIDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 +++T+DG+++ +++ P + K Y+VT++ V Sbjct: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPV 140
>RSUA_SALTI (P65841) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 231 Score = 74.3 bits (181), Expect = 2e-13 Identities = 45/152 (29%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K +A SR + I +VTV+G + K+ + + ++ +GN ++++ P Sbjct: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGDIIKNAAFKL-LPEHAVAYDGNPLAQQHGP 60 Query: 304 KLYFAVNKPKGYICSSGE--EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 + YF +NKP+GY+CS+ + +V+ LD+ + +L GRLD+ TTGL Sbjct: 61 R-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAY-----------KLHAAGRLDIDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 +++T+DG+++ +++ P + K Y+VT++ V Sbjct: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPV 140
>RLUB_BUCBP (Q89AL1) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 247 Score = 74.3 bits (181), Expect = 2e-13 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQT-KVDISKDSIYVNGN-----R 282 +++ K+LA G SRR E LI V +N V Q +++ + I N N Sbjct: 3 EKIQKILARHGYGSRRYIESLIKSHSVKINDEVVKVGQRISINVIQKVIINNNNYKPKLN 62 Query: 283 ISKKLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDV 462 I+K L LY NKP+G IC+ ++++ ++ + P + R +GRLD+ Sbjct: 63 INKSLKVLLY---NKPEGEICTRKDQRNRRTIFEKL--------PKLSNARWINIGRLDL 111 Query: 463 ATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 ++GL++ T DGE A +++HPS NI + Y V + G Sbjct: 112 NSSGLLLFTTDGELAYRLTHPSFNIERIYKVRVFG 146
>RSUA_YERPE (Q8ZGM2) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 235 Score = 72.8 bits (177), Expect = 7e-13 Identities = 45/149 (30%), Positives = 83/149 (55%), Gaps = 2/149 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K L+ SR + +VT++G V + K+ +D + +GN + + + P Sbjct: 2 RLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGAIKLTPEQD-VRFDGNPLQQMVGP 60 Query: 304 KLYFAVNKPKGYICSSGE--EKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 + YF +NKP+GY+CS+ + +V+ LD+ + +L GRLD+ TTGL Sbjct: 61 R-YFMLNKPQGYVCSTEDPDHPTVLYFLDEPVAY-----------KLHAAGRLDIDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTID 564 +++T+DG+++ +V+ P + K Y+VT++ Sbjct: 109 VLMTDDGQWSHRVTSPRHHCEKTYLVTLE 137
>RSUA_HAEIN (P45124) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 232 Score = 71.6 bits (174), Expect = 2e-12 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K +A +R + + I Q V +NG + + ++ +D IY ++ + Sbjct: 2 RLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQIS-QEDEIYFEDELLTW-IEE 59 Query: 304 KLYFAVNKPKGYICSS--GEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 YF +NKP+G +CS+ G+ ++ D L G +L + GRLDV TTGL Sbjct: 60 GQYFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAG-----------KLHSAGRLDVDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHLVA 594 +++T+DG+++ +++ P + K Y+VT+ V + + A Sbjct: 109 VLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAA 147
>RLUF_SALTY (Q8ZKL1) Ribosomal large subunit pseudouridine synthase F (EC| 5.4.99.-) (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) Length = 289 Score = 70.9 bits (172), Expect = 3e-12 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 3/150 (2%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K ++ +G+ SRR ++ I QG V +NG V + D + VNG I + Sbjct: 8 RLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVV--AGDIVKVNGRLIEPREAD 65 Query: 304 KLYF-AVNKPKGYICSS--GEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTG 474 L A+NKP G + ++ GE +++ ++ R+F +GRLD + G Sbjct: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH-------------SKRIFPIGRLDKDSQG 112 Query: 475 LIIVTNDGEFAQKVSHPSSNITKEYVVTID 564 LI +TN G+ K+ ++ KEY+VT+D Sbjct: 113 LIFLTNHGDLVNKILRAGNDHEKEYLVTVD 142
>RLUF_SALTI (Q8Z1V3) Ribosomal large subunit pseudouridine synthase F (EC| 5.4.99.-) (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) Length = 289 Score = 70.9 bits (172), Expect = 3e-12 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 3/150 (2%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K ++ +G+ SRR ++ I QG V +NG V + D + VNG I + Sbjct: 8 RLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVV--AGDVVKVNGRLIEPREAD 65 Query: 304 KLYF-AVNKPKGYICSS--GEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTG 474 L A+NKP G + ++ GE +++ ++ R+F +GRLD + G Sbjct: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH-------------SKRIFPIGRLDKDSQG 112 Query: 475 LIIVTNDGEFAQKVSHPSSNITKEYVVTID 564 LI +TN G+ K+ ++ KEY+VT+D Sbjct: 113 LIFLTNHGDLVNKILRAGNDHEKEYLVTVD 142
>RLUF_ECOLI (P32684) Ribosomal large subunit pseudouridine synthase F (EC| 5.4.99.-) (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) Length = 290 Score = 70.1 bits (170), Expect = 5e-12 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 4/159 (2%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCT-APQTKVDISKDSIYVNGNRISKKLP 300 RL K ++ +G+ SRR ++ I QG V +NG T Q K D + VNG I + Sbjct: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG---DVVKVNGQLIEPREA 64 Query: 301 PKLYF-AVNKPKGYICSS--GEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 L A+NKP G + ++ GE +++ ++ R+F +GRLD + Sbjct: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-------------SKRVFPIGRLDKDSQ 111 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 GLI +TN G+ K+ ++ KEY+VT+D + ++ + Sbjct: 112 GLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI 150
>RLUF_SHIFL (Q83IR6) Ribosomal large subunit pseudouridine synthase F (EC| 5.4.99.-) (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) Length = 290 Score = 69.7 bits (169), Expect = 6e-12 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCT-APQTKVDISKDSIYVNGNRISKKLP 300 RL K ++ +G+ SRR ++ I QG V +NG T Q K D + VNG I + Sbjct: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG---DIVKVNGQLIEPREA 64 Query: 301 PKLYF-AVNKPKGYICSS--GEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 L A+NKP G + ++ GE +++ ++ R+F +GRLD + Sbjct: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-------------SKRVFPIGRLDKDSQ 111 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTID 564 GLI +TN G+ K+ ++ KEY+VT+D Sbjct: 112 GLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 142
>RLUF_ECOL6 (Q8FB47) Ribosomal large subunit pseudouridine synthase F (EC| 5.4.99.-) (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) Length = 290 Score = 69.7 bits (169), Expect = 6e-12 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCT-APQTKVDISKDSIYVNGNRISKKLP 300 RL K ++ +G+ SRR ++ I QG V +NG T Q K D + VNG I + Sbjct: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG---DVVKVNGQLIEPRES 64 Query: 301 PKLYF-AVNKPKGYICSS--GEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 L A+NKP G + ++ GE +++ ++ R+F +GRLD + Sbjct: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-------------SKRVFPIGRLDKDSQ 111 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTID 564 GLI +TN G+ K+ ++ KEY+VT+D Sbjct: 112 GLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 142
>RLUF_ECO57 (Q8X4L9) Ribosomal large subunit pseudouridine synthase F (EC| 5.4.99.-) (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) Length = 290 Score = 69.7 bits (169), Expect = 6e-12 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCT-APQTKVDISKDSIYVNGNRISKKLP 300 RL K ++ +G+ SRR ++ I QG V +NG T Q K D + VNG I + Sbjct: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG---DVVKVNGQLIEPREA 64 Query: 301 PKLYF-AVNKPKGYICSS--GEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATT 471 L A+NKP G + ++ GE +++ ++ R+F +GRLD + Sbjct: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-------------SKRVFPIGRLDKDSQ 111 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTID 564 GLI +TN G+ K+ ++ KEY+VT+D Sbjct: 112 GLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 142
>RSUA_PASMU (Q9CPN4) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 232 Score = 69.3 bits (168), Expect = 8e-12 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 2/156 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K LA +R + +++ Q VTVNG V KV D I + G + + Sbjct: 2 RLDKFLAENTGLTRSQANKVLKQSAVTVNGHVEKNGAQKVS-QTDEICLEGEHLPW-VSA 59 Query: 304 KLYFAVNKPKGYICS--SGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 Y + KP+GY+CS G+ ++ D L G +L + GRLDV TTGL Sbjct: 60 GQYLMLYKPQGYVCSHEDGDYPTIYQFFDYPLAG-----------KLHSAGRLDVDTTGL 108 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKH 585 +++T+DG+++ +++ P + K Y+VT+ V + Sbjct: 109 VLLTDDGKWSHRITSPKHHCEKTYLVTLADPVESHY 144
>RSUA_VIBVU (Q8D8X2) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 233 Score = 63.2 bits (152), Expect = 6e-10 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 2/146 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K L A A+R+ + +++ G+VTVN V + KV + + G ++ + P Sbjct: 2 RLDKFLCDALGATRKEATKILKSGEVTVNEQVQKSGAVKVT-EECVVEWQGRELAMQGPR 60 Query: 304 KLYFAVNKPKGYICS--SGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 Y + KP+G++CS G + LLD+ V L GRLDV TTGL Sbjct: 61 --YIMLYKPEGFVCSHEDGFNHTAFVLLDE-----------VKMDELHFAGRLDVDTTGL 107 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVV 555 +++T+DG+++ +++ P K Y V Sbjct: 108 VLITDDGKWSHRITSPKHKCDKTYRV 133
>RSUA_VIBPA (Q87QD4) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 233 Score = 60.5 bits (145), Expect = 4e-09 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K L A A+R+ + ++I G+V V+G V + KV + +G + P Sbjct: 2 RLDKYLCDALGATRKQATKIIKSGEVLVDGEVQKSGSFKVP-EGGVVEWDGREVGA--PG 58 Query: 304 KLYFAVNKPKGYICS--SGEEKSVISLLDDYLKGWNKLQPGVPK-PRLFTVGRLDVATTG 474 Y + KP ++CS G + LLD+ PK L GRLDV TTG Sbjct: 59 PRYIMLYKPADFVCSHEDGYNPTAFVLLDE------------PKVENLHFAGRLDVDTTG 106 Query: 475 LIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 L+++T+DG+++ +++ P K Y V + A+ ++ Sbjct: 107 LVLITDDGQWSHRITSPKHKCKKTYRVWLADAIQPDYV 144
>RSUA_VIBCH (Q9KRK5) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 231 Score = 59.3 bits (142), Expect = 8e-09 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 2/146 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL K L A +R+ + +L+ G+VTV+ V + K+ K++ V L Sbjct: 2 RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKL---KETSCVEWQGREITLHG 58 Query: 304 KLYFAVNKPKGYICS--SGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 Y ++KP G +CS G ++ ++LLD+ V L GRLDV TTGL Sbjct: 59 PRYIMMHKPDGVVCSHEDGFNQTALTLLDE-----------VNIQDLHFAGRLDVDTTGL 107 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVV 555 +++T+DG+++ +V+ P K Y V Sbjct: 108 LLITDDGQWSHRVTSPKHKCEKTYRV 133
>RSUA_PSEAE (Q9I5J6) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 230 Score = 55.1 bits (131), Expect = 2e-07 Identities = 44/157 (28%), Positives = 80/157 (50%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 RL + LA SRR ++ LI G + V+G V +V + S R+ + P Sbjct: 2 RLDRFLANLPELSRRDAQMLIAGGHLRVDGQVVRDGTHEVRVF--SRVELDERLLQAGKP 59 Query: 304 KLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLII 483 Y+ ++KP G + ++ + + ++LD L P + L GRLD TTGL++ Sbjct: 60 ARYYMLHKPMGCVSATRDPQHP-TVLD--------LFPEDLRDDLHIGGRLDYNTTGLML 110 Query: 484 VTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHLVA 594 +TNDG+++++++ P S K Y V + + ++++ A Sbjct: 111 LTNDGQWSRRLTLPGSRRDKVYYVETEAPIDQRYVDA 147
>YE59_HELPJ (Q9ZJG0) Hypothetical RNA pseudouridine synthase jhp_1352 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 262 Score = 49.7 bits (117), Expect = 6e-06 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 R+ + LA SRR +E+L+ +G+V +N A V D ++++ R+ K L Sbjct: 7 RINQFLAHYTKHSRREAEKLVLEGRVKINHE--HAKLASVVKENDKVFLD-KRLIKPLKN 63 Query: 304 KLY--FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 K + +KPKG + S + + + K + P VGRLD A+ G+ Sbjct: 64 KKFSVLVYHKPKGELVSKADPLKRHVIYESLEKKYAHFAP---------VGRLDFASEGV 114 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKK 582 +++++ + H +N+ KEY+V I G V ++ Sbjct: 115 LLLSDSKAVVSALMH--ANLEKEYLVKIQGFVTRE 147
>Y1459_HELPY (P55986) Hypothetical RNA pseudouridine synthase HP1459 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 262 Score = 47.0 bits (110), Expect = 4e-05 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Frame = +1 Query: 124 RLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPP 303 R+ + LA SRR +E+L+ +G+V +N A V D ++++ R+ K L Sbjct: 7 RINQFLAHYTKHSRREAEKLVLEGRVKINHE--HAKLASVVKENDRVFLD-KRLIKPLKN 63 Query: 304 KLY--FAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGL 477 K + +KPKG + S + + + K + P VGRLD A+ G+ Sbjct: 64 KKFSVLVYHKPKGELVSKADPLKRRVIYESLEKKYAHFAP---------VGRLDFASEGV 114 Query: 478 IIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKK 582 +++++ + H +++ KEY++ I G V ++ Sbjct: 115 LLLSDSKAVVSALMH--ADLEKEYLIKIQGFVTRE 147
>RLUE_PSEAE (Q9HX48) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 189 Score = 46.6 bits (109), Expect = 5e-05 Identities = 20/65 (30%), Positives = 38/65 (58%) Frame = +1 Query: 394 KGWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAV 573 +G + L+ +P P ++ GRLD + GL+++TNDG +++ P + K Y V ++G Sbjct: 28 QGRSTLKDFIPVPGVYPAGRLDRDSEGLLLLTNDGRLQARIADPRHKLPKTYWVQVEGTP 87 Query: 574 HKKHL 588 ++ L Sbjct: 88 DEEQL 92
>RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 46.2 bits (108), Expect = 7e-05 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 14/152 (9%) Frame = +1 Query: 160 SRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKK------LPPKLYF-- 315 SR +E + +GK+ VNG V T P+TKV + + I V ++ LP + + Sbjct: 32 SRSRLKEWLLEGKIAVNGDVITKPRTKV-MGGEVITVQAELEDEQRWEAQDLPLNIVYED 90 Query: 316 ----AVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLII 483 +NKP+ ++ G ++ ++L+ L ++ P PR V RLD TTGL++ Sbjct: 91 DDIIVINKPRDFVVHPGAGQADKTVLNALLFHYS---PIAEVPRAGIVHRLDKDTTGLMV 147 Query: 484 VTNDGEFAQKV--SHPSSNITKEYVVTIDGAV 573 V ++ + ++T+EY + G + Sbjct: 148 VAKTVPAQTRLVRALQKRDVTREYEAIVIGTM 179
>RLUE_VIBPA (Q87QY8) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 238 Score = 45.8 bits (107), Expect = 9e-05 Identities = 23/64 (35%), Positives = 35/64 (54%) Frame = +1 Query: 397 GWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVH 576 G L +P ++ GRLD + GL+++TNDG K++ P S K Y V +DGA Sbjct: 81 GRKTLADYIPVKDVYAAGRLDRDSEGLMVLTNDGILQAKLTQPKSKSPKTYWVQVDGAPQ 140 Query: 577 KKHL 588 ++ L Sbjct: 141 EQDL 144
>RLUE_XANAC (Q8PQN3) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 190 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = +1 Query: 418 GVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHLVA 594 G+P P ++ GRLD + GL+++T+DG A +++ P K Y V ++GA +HL A Sbjct: 30 GLP-PDVYAAGRLDHDSEGLLVLTDDGALAHRLTDPRHKQPKTYWVQVEGAPQAEHLQA 87
>RLUE_PASMU (Q9CKK7) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 241 Score = 44.3 bits (103), Expect = 3e-04 Identities = 19/58 (32%), Positives = 34/58 (58%) Frame = +1 Query: 394 KGWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 +G L+ +P P ++ GRLD + GL+++TN+GE +++ P N K Y ++G Sbjct: 68 EGRATLKAFIPIPHVYPAGRLDRDSEGLVLLTNNGEIQHRLAVPKFNTEKTYFAQVEG 125
>RLUE_VIBVU (Q8DAS3) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 234 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/59 (35%), Positives = 33/59 (55%) Frame = +1 Query: 394 KGWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGA 570 +G L +P ++ GRLD + GL+++TNDG K++ P S K Y V ++GA Sbjct: 74 EGRKTLADFIPVKEVYAAGRLDRDSEGLMVLTNDGILQAKLTQPKSKSPKTYWVQVEGA 132
>RLUE_YERPE (Q8ZFQ3) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 208 Score = 43.1 bits (100), Expect = 6e-04 Identities = 19/57 (33%), Positives = 33/57 (57%) Frame = +1 Query: 397 GWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 G LQ +P ++ GRLD + GL+++TNDG+ +++ P+ K Y V ++G Sbjct: 49 GRTTLQGFIPFKDVYAAGRLDRDSEGLLVLTNDGKLQARLTQPAQKTGKVYFVQVEG 105
>RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 43.1 bits (100), Expect = 6e-04 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 23/153 (15%) Frame = +1 Query: 160 SRRTSEELIFQGKVTVNGSVCTAPQTKV---------------------DISKDSIYVNG 276 SR +E + GKV VNG V T P+TKV DI D +Y + Sbjct: 32 SRSRLKEWLLDGKVQVNGEVVTKPRTKVMGGEEITLQAELEDEERWEAQDIPLDIVYEDD 91 Query: 277 NRISKKLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRL 456 + I +NKP+ ++ G ++L+ L + + PR V RL Sbjct: 92 DII----------VINKPRDFVVHPGAGTPDGTVLNALLHHYPDI---AEVPRAGIVHRL 138 Query: 457 DVATTGLIIVTNDGEFAQKV--SHPSSNITKEY 549 D TTGL++V ++ + NIT+EY Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVRALQKRNITREY 171
>RLUE_VIBCH (Q9F855) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 241 Score = 43.1 bits (100), Expect = 6e-04 Identities = 22/66 (33%), Positives = 35/66 (53%) Frame = +1 Query: 397 GWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVH 576 G L +P ++ GRLD + GL+I+TNDG +++ P S K Y V ++G+ Sbjct: 84 GRKTLADYIPIKDVYAAGRLDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQ 143 Query: 577 KKHLVA 594 + L A Sbjct: 144 ESDLEA 149
>RLUE_SALTY (Q8ZPZ1) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 221 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/93 (26%), Positives = 41/93 (44%) Frame = +1 Query: 289 KKLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 K+ PK NKP + +E G L+ +P ++ GRLD + Sbjct: 34 KENQPKRVVLFNKPYDVLPQFTDEA-----------GRRTLKDFIPVQGVYAAGRLDRDS 82 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 GL+++TNDG +++ P K Y V ++G Sbjct: 83 EGLLVLTNDGALQARLTQPGKRTGKIYYVQVEG 115
>RLUE_SALTI (Q8Z7G6) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 221 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/93 (26%), Positives = 41/93 (44%) Frame = +1 Query: 289 KKLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 K+ PK NKP + +E G L+ +P ++ GRLD + Sbjct: 34 KENQPKRVVLFNKPYDVLPQFTDEA-----------GRRTLKDFIPVQGVYAAGRLDRDS 82 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 GL+++TNDG +++ P K Y V ++G Sbjct: 83 EGLLVLTNDGALQARLTQPGKRTGKIYYVQVEG 115
>RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 41.2 bits (95), Expect = 0.002 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 23/153 (15%) Frame = +1 Query: 160 SRRTSEELIFQGKVTVNGSVCTAPQTKV---------------------DISKDSIYVNG 276 SR +E + GKVTV+G+V T P+TKV DI D +Y + Sbjct: 32 SRSRLKEWLLDGKVTVDGNVVTKPRTKVMGGEVITVLAELEDEVRWEAQDIPLDIVYEDD 91 Query: 277 NRISKKLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRL 456 + +NKP+ ++ G ++L+ L ++ PR V RL Sbjct: 92 D----------ILVINKPRDFVVHPGAGTPDGTVLNALLFHCPEV---AEVPRAGIVHRL 138 Query: 457 DVATTGLIIVTNDGEFAQKV--SHPSSNITKEY 549 D TTGL++V ++ + NIT+EY Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVRALQKRNITREY 171
>RLUE_HAEIN (P44827) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 240 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = +1 Query: 394 KGWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 +G L+ + P ++ GRLD + GL+I+TN+GE +++ P K Y V ++G Sbjct: 70 QGRATLKDFISIPNVYAAGRLDRDSEGLLILTNNGELQHRLADPKFKTEKTYWVQVEG 127
>PUS5_CANAL (Q5A0Y2) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 247 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Frame = +1 Query: 310 YFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIVT 489 Y VNKP G +C + ++I+ L + + K+ P V + V RLD TG ++V Sbjct: 12 YAVVNKPSGMVCDASHTNNIITALTN---EFTKILPSVNSSQFRLVQRLDRFVTGGLVVA 68 Query: 490 NDGEFAQKV-----SHPSSNITKEYV 552 + ++A KV + +T+ YV Sbjct: 69 RNKKWADKVRKSFFQEGTLRLTRRYV 94
>YTZF_BACSU (O32068) Hypothetical RNA pseudouridine synthase ytzF (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 157 Score = 40.4 bits (93), Expect = 0.004 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +1 Query: 439 FTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHL 588 F GRLD T G +++TNDG+ A ++ P ++ K Y V + + ++ + Sbjct: 15 FPAGRLDKDTEGFLLLTNDGQLAHRLLSPKKHVPKTYEVHLKSQISREDI 64
>RLUE_XANCP (Q8PDR2) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 187 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/50 (36%), Positives = 32/50 (64%) Frame = +1 Query: 418 GVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 G+P P+++ GRLD + GL+++T+DG A +++ P K Y V ++G Sbjct: 30 GLP-PQVYAAGRLDHDSEGLLLLTDDGPLAHRLTDPRHKQPKTYWVQVEG 78
>RLUD_SHIFL (P65835) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 39.3 bits (90), Expect = 0.009 Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 15/168 (8%) Frame = +1 Query: 91 TTIISRXHEPQRLAKVLAAAGVA-SRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIY 267 T +S QRL + LA SR +E I +V VNG VC P+ KV + + + Sbjct: 7 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV-LGGEQVA 65 Query: 268 VNGNRIS------KKLPPKLYF------AVNKPKGYICSSGEEKSVISLLDDYLKGWNKL 411 +N + +P + + +NKP+ + G ++L+ L + Sbjct: 66 INAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALL---HYY 122 Query: 412 QPGVPKPRLFTVGRLDVATTGLIIV--TNDGEFAQKVSHPSSNITKEY 549 P PR V RLD TTGL++V T + S IT+EY Sbjct: 123 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 170
>RLUD_ECOL6 (P65834) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 39.3 bits (90), Expect = 0.009 Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 15/168 (8%) Frame = +1 Query: 91 TTIISRXHEPQRLAKVLAAAGVA-SRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIY 267 T +S QRL + LA SR +E I +V VNG VC P+ KV + + + Sbjct: 7 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV-LGGEQVA 65 Query: 268 VNGNRIS------KKLPPKLYF------AVNKPKGYICSSGEEKSVISLLDDYLKGWNKL 411 +N + +P + + +NKP+ + G ++L+ L + Sbjct: 66 INAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALL---HYY 122 Query: 412 QPGVPKPRLFTVGRLDVATTGLIIV--TNDGEFAQKVSHPSSNITKEY 549 P PR V RLD TTGL++V T + S IT+EY Sbjct: 123 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 170
>RLUD_ECOLI (P33643) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 38.9 bits (89), Expect = 0.011 Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 15/168 (8%) Frame = +1 Query: 91 TTIISRXHEPQRLAKVLAAAGVA-SRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIY 267 T +S QRL + LA SR +E I +V VNG VC P+ KV + + + Sbjct: 7 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV-LGGEQVA 65 Query: 268 VNGNRIS------KKLPPKLYF------AVNKPKGYICSSGEEKSVISLLDDYLKGWNKL 411 +N + +P + + +NKP+ + G ++L+ L + Sbjct: 66 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL---HYY 122 Query: 412 QPGVPKPRLFTVGRLDVATTGLIIV--TNDGEFAQKVSHPSSNITKEY 549 P PR V RLD TTGL++V T + S IT+EY Sbjct: 123 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 170
>RLUE_SHIFL (Q83LF6) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 217 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +1 Query: 397 GWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 G L+ +P ++ GRLD + GL+++TN+G +++ P K Y V ++G Sbjct: 59 GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115
>RLUE_ECOLI (P75966) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 217 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +1 Query: 397 GWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 G L+ +P ++ GRLD + GL+++TN+G +++ P K Y V ++G Sbjct: 59 GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115
>RLUE_ECOL6 (Q8FIB6) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 217 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +1 Query: 397 GWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 G L+ +P ++ GRLD + GL+++TN+G +++ P K Y V ++G Sbjct: 59 GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115
>RLUE_ECO57 (Q8X724) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 217 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +1 Query: 397 GWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDG 567 G L+ +P ++ GRLD + GL+++TN+G +++ P K Y V ++G Sbjct: 59 GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115
>RLUD_ECO57 (Q8X9F0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 38.1 bits (87), Expect = 0.019 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 15/168 (8%) Frame = +1 Query: 91 TTIISRXHEPQRLAKVLAAAGVA-SRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIY 267 T +S QRL + LA SR +E I +V VNG +C P+ KV + + + Sbjct: 7 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKLCDKPKEKV-LGGEQVA 65 Query: 268 VNGNRISKK------LPPKLYF------AVNKPKGYICSSGEEKSVISLLDDYLKGWNKL 411 +N + +P + + +NKP+ + G ++L+ L + Sbjct: 66 INAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYY--- 122 Query: 412 QPGVPKPRLFTVGRLDVATTGLIIV--TNDGEFAQKVSHPSSNITKEY 549 P PR V RLD TTGL++V T + S IT+EY Sbjct: 123 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 170
>RLUD_SALTY (P65836) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 36.6 bits (83), Expect = 0.056 Identities = 47/177 (26%), Positives = 68/177 (38%), Gaps = 24/177 (13%) Frame = +1 Query: 91 TTIISRXHEPQRLAKVLAAAGVA-SRRTSEELIFQGKVTVNGSVCTAPQTKV-------- 243 T +S QRL + LA SR +E I +V VNG +C P+ KV Sbjct: 7 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAI 66 Query: 244 -------------DISKDSIYVNGNRISKKLPPKLYFAVNKPKGYICSSGEEKSVISLLD 384 DI D +Y + + + +NKP+ + G ++L+ Sbjct: 67 DAEIDEEIRFEAQDIPLDIVYEDDDIL----------VINKPRDLVVHPGAGNPDGTVLN 116 Query: 385 DYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIV--TNDGEFAQKVSHPSSNITKEY 549 L + P PR V RLD TTGL++V T + S IT+EY Sbjct: 117 ALLHYY---PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREY 170
>RLUD_SALTI (P65837) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 36.6 bits (83), Expect = 0.056 Identities = 47/177 (26%), Positives = 68/177 (38%), Gaps = 24/177 (13%) Frame = +1 Query: 91 TTIISRXHEPQRLAKVLAAAGVA-SRRTSEELIFQGKVTVNGSVCTAPQTKV-------- 243 T +S QRL + LA SR +E I +V VNG +C P+ KV Sbjct: 7 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAI 66 Query: 244 -------------DISKDSIYVNGNRISKKLPPKLYFAVNKPKGYICSSGEEKSVISLLD 384 DI D +Y + + + +NKP+ + G ++L+ Sbjct: 67 DAEIDEEIRFEAQDIPLDIVYEDDDIL----------VINKPRDLVVHPGAGNPDGTVLN 116 Query: 385 DYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIV--TNDGEFAQKVSHPSSNITKEY 549 L + P PR V RLD TTGL++V T + S IT+EY Sbjct: 117 ALLHYY---PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREY 170
>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 36.6 bits (83), Expect = 0.056 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 19/163 (11%) Frame = +1 Query: 160 SRRTSEELIFQGKVTVNGSVCTAPQTKV----------DISKDSIYVNGNRISKKLPPKL 309 SR + I Q V VNG V P+ KV +I D+ + N LP + Sbjct: 31 SRSRLKTWIEQNLVHVNGDVVNVPRAKVYGGEQIEIVVEIDDDTRFEPEN-----LPLNI 85 Query: 310 YF------AVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPK-PRLFTVGRLDVAT 468 + +NKPK ++ G + ++L+ L + P + + PR V RLD T Sbjct: 86 VYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHY----PAIAEVPRAGIVHRLDKDT 141 Query: 469 TGLIIVTNDGEFAQKVSH--PSSNITKEYVVTIDGAVHKKHLV 591 TGL+++ K+ IT+EY G + K +V Sbjct: 142 TGLMVIAKTIPAQTKLVRDLQKRKITREYEAIACGIMTKGGMV 184
>RLUD_YERPE (Q8ZBV7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 36.2 bits (82), Expect = 0.073 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 13/143 (9%) Frame = +1 Query: 160 SRRTSEELIFQGKVTVNGSVCTAPQTKV----DISKDS-IYVNGNRISKKLPPKLYF--- 315 SR +E I +VTVNG P+ KV ++ D+ I + +++P + + Sbjct: 32 SRSRIKEWILDSRVTVNGKKINKPKEKVLGGELVAIDAQIEEDARWAPQEIPLDIVYEDN 91 Query: 316 ---AVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIV 486 +NKP+G + G ++L+ L + ++ + PR V RLD TTGL++V Sbjct: 92 DILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEI---MDVPRAGIVHRLDKDTTGLMVV 148 Query: 487 --TNDGEFAQKVSHPSSNITKEY 549 T + + + IT+EY Sbjct: 149 AKTVPAQTRLVEALQAREITREY 171
>Y612_SYNY3 (P72581) Hypothetical RNA pseudouridine synthase slr0612 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 261 Score = 36.2 bits (82), Expect = 0.073 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = +1 Query: 292 KLPPKLYFAVNKPKGYICSSGEEKS-VISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVAT 468 K P + F KP G +C + + L DY+ P L+ VGRLD + Sbjct: 37 KTPQTIVFY--KPYGVLCQFTDNSAHPRPTLKDYIN----------LPDLYPVGRLDQDS 84 Query: 469 TGLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGA 570 GL+++T++G+ +++H + Y ++G+ Sbjct: 85 EGLLLLTSNGKLQHRLAHREFAHQRTYFAQVEGS 118
>RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 315 Score = 33.5 bits (75), Expect = 0.48 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Frame = +1 Query: 160 SRRTSEELIFQGKVTVNGSVCTAPQTKV-DISKDSIYVNGNRISKKLPPKL--------- 309 SR ++ I V +NG + P K+ K +IY ++ LP + Sbjct: 32 SRSCLKKWIIMNNVYINGKIENQPDKKILGGEKITIYSTDEKLPINLPQNIALNTIYEDS 91 Query: 310 -YFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIV 486 +NKP G + G ++L+ L + + PR + RLD T+GL+++ Sbjct: 92 NILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISS---IPRCGIIHRLDKDTSGLMVI 148
>Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG209 homolog (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (H10_orf309) Length = 309 Score = 32.7 bits (73), Expect = 0.81 Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 17/164 (10%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVN-GNRISKKL 297 QRL LA SR +LI G V+VNG T V +D ++VN + +K+ Sbjct: 11 QRLDTFLATLLNLSRVKVAKLIVDGLVSVNGKKITKNGWLVQ-PEDRVHVNWSEELFEKV 69 Query: 298 PPKL---------------YFAVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKP 432 P ++ VNKP G I SLL L N QP Sbjct: 70 PVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCNH-QP----- 123 Query: 433 RLFTVGRLDVATTGLIIVT-NDGEFAQKVSHPSSNITKEYVVTI 561 +F V RLD T+G+I++ N + K Y + + Sbjct: 124 -VFLVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLAL 166
>RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Frame = +1 Query: 319 VNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDG 498 +NKPK + G ++L+ L + P V PR V RLD TTGL++V Sbjct: 95 INKPKDLVVHPGAGNPNGTVLNALLYHY---PPIVEVPRAGIVHRLDKDTTGLMVVAKTI 151 Query: 499 EFAQKVSH--PSSNITKEYVVTIDGAVHK 579 K+ IT+EY G + K Sbjct: 152 PAQTKLVRDLQKRKITREYEAVASGIMTK 180
>RLUA_VIBPA (Q87LD3) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 250 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = +1 Query: 316 AVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIVTND 495 AVNKP G + G L + + W++LQ P ++ V RLD++T+GL+++ + Sbjct: 25 AVNKPSGLLSVPGR------LAEHHDSMWSRLQEEYPDIQV--VHRLDMSTSGLMVLAKN 76
>RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 312 Score = 31.2 bits (69), Expect = 2.4 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Frame = +1 Query: 160 SRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD-SIYVNGNRISKKLPPKLYF------- 315 SR ++LI +V VN S+ P K+ + +I+ + +P ++ Sbjct: 32 SRSYLKKLIIMNQVLVNESIVNQPDKKILGGETLTIHPFSKDLLVDIPENIFLDIVYEDS 91 Query: 316 ---AVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIV 486 +NKP G + G ++L+ L + + PR V RLD T+GL+++ Sbjct: 92 DILIINKPAGLVVHPGSGNKSGTILNALLYHYKNSKD---LPRAGIVHRLDKDTSGLMVI 148 Query: 487 TND 495 + Sbjct: 149 AKN 151
>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein| 89) Length = 8081 Score = 31.2 bits (69), Expect = 2.4 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Frame = +1 Query: 226 APQTKVDISKDSIYVNGNRISKKLPPKLYFAVNKPKGYICSSGEEKSVISLLDDYLKGWN 405 AP+ ++D+ K I +N + +K +L G I EE S ++ +K Sbjct: 7723 APKLQIDVLKSEIRLNVVSMPQKSTNQL--------GGISEESEEDSEARTANEDMKSNL 7774 Query: 406 KLQPGVPKPRLFTVGRLDVATTGLII-----VTNDGEF--AQKVSHPSSNITKEYVVTID 564 +LQ P R F +G L +I T +G A K+ HPSS EY D Sbjct: 7775 QLQTDDPTGR-FQIGGLKFKGRFSVIRDAVDSTTEGHAHCAVKIRHPSSEAISEYESLRD 7833 Query: 565 G 567 G Sbjct: 7834 G 7834
>RLUA_VIBVU (Q8DCG0) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 250 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +1 Query: 316 AVNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLII 483 AVNKP G + G L + + W++LQ P+ ++ V RLD++T+GL++ Sbjct: 25 AVNKPSGLLSVPGR------LPEHHDSMWSRLQEQYPEIQV--VHRLDMSTSGLMV 72
>RS4_METJA (P54020) 30S ribosomal protein S4P| Length = 187 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVA-SRRTSEELIFQGKVTVNGSVCTAPQTKVDISKD 258 +RL ++ G+A + R + +LI G + VNG V TAP V + ++ Sbjct: 105 RRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEE 151
>ATPF_STAAW (Q7A0C4) ATP synthase B chain (EC 3.6.3.14)| Length = 173 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/92 (26%), Positives = 47/92 (51%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 + + K+L A V +R+ E++I + V NG + TA Q++++ K+ + N +L Sbjct: 84 EEVQKILEDAKVQARQQQEQIIHEANVRANGMIETA-QSEINSQKERAIADINNQVSELS 142 Query: 301 PKLYFAVNKPKGYICSSGEEKSVISLLDDYLK 396 + V + + S ++K +L+D YLK Sbjct: 143 VLIASKVLRKE---ISEQDQK---ALVDKYLK 168
>ATPF_STAAS (Q6G7K3) ATP synthase B chain (EC 3.6.3.14)| Length = 173 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/92 (26%), Positives = 47/92 (51%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 + + K+L A V +R+ E++I + V NG + TA Q++++ K+ + N +L Sbjct: 84 EEVQKILEDAKVQARQQQEQIIHEANVRANGMIETA-QSEINSQKERAIADINNQVSELS 142 Query: 301 PKLYFAVNKPKGYICSSGEEKSVISLLDDYLK 396 + V + + S ++K +L+D YLK Sbjct: 143 VLIASKVLRKE---ISEQDQK---ALVDKYLK 168
>ATPF_STAAR (Q6GEW8) ATP synthase B chain (EC 3.6.3.14)| Length = 173 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/92 (26%), Positives = 47/92 (51%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 + + K+L A V +R+ E++I + V NG + TA Q++++ K+ + N +L Sbjct: 84 EEVQKILEDAKVQARQQQEQIIHEANVRANGMIETA-QSEINSQKERAIADINNQVSELS 142 Query: 301 PKLYFAVNKPKGYICSSGEEKSVISLLDDYLK 396 + V + + S ++K +L+D YLK Sbjct: 143 VLIASKVLRKE---ISEQDQK---ALVDKYLK 168
>ATPF_STAAN (Q7A4E7) ATP synthase B chain (EC 3.6.3.14)| Length = 173 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/92 (26%), Positives = 47/92 (51%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 + + K+L A V +R+ E++I + V NG + TA Q++++ K+ + N +L Sbjct: 84 EEVQKILEDAKVQARQQQEQIIHEANVRANGMIETA-QSEINSQKERAIADINNQVSELS 142 Query: 301 PKLYFAVNKPKGYICSSGEEKSVISLLDDYLK 396 + V + + S ++K +L+D YLK Sbjct: 143 VLIASKVLRKE---ISEQDQK---ALVDKYLK 168
>ATPF_STAAM (Q99SF1) ATP synthase B chain (EC 3.6.3.14)| Length = 173 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/92 (26%), Positives = 47/92 (51%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 + + K+L A V +R+ E++I + V NG + TA Q++++ K+ + N +L Sbjct: 84 EEVQKILEDAKVQARQQQEQIIHEANVRANGMIETA-QSEINSQKERAIADINNQVSELS 142 Query: 301 PKLYFAVNKPKGYICSSGEEKSVISLLDDYLK 396 + V + + S ++K +L+D YLK Sbjct: 143 VLIASKVLRKE---ISEQDQK---ALVDKYLK 168
>ATPF_STAAC (Q5HE93) ATP synthase B chain (EC 3.6.3.14)| Length = 173 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/92 (26%), Positives = 47/92 (51%) Frame = +1 Query: 121 QRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLP 300 + + K+L A V +R+ E++I + V NG + TA Q++++ K+ + N +L Sbjct: 84 EEVQKILEDAKVQARQQQEQIIHEANVRANGMIETA-QSEINSQKERAIADINNQVSELS 142 Query: 301 PKLYFAVNKPKGYICSSGEEKSVISLLDDYLK 396 + V + + S ++K +L+D YLK Sbjct: 143 VLIASKVLRKE---ISEQDQK---ALVDKYLK 168
>MTL5_HUMAN (Q9Y4I5) Tesmin (Metallothionein-like 5, testis-specific)| (Testis-specific metallothionein-like protein) Length = 299 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = +1 Query: 346 SSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFA 507 S E + L+ Y N LQ VPKP VGR A+T L ++T E A Sbjct: 18 SRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGA 71
>SYY_LACBR (Q7B9Y9) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 418 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 100 ISRXHEPQRLAKVLAAAGVA-SRRTSEELIFQGKVTVNGSVCT 225 +S EP + ++L + SRR + E I G +T+NG CT Sbjct: 343 VSINSEPTNIVELLTETAIEPSRRQAREDITNGAITINGERCT 385
>RS4_NATPD (Q3IQT8) 30S ribosomal protein S4P| Length = 174 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +1 Query: 121 QRLAKVLAAAGVASR-RTSEELIFQGKVTVNGSVCTAPQTKVDISKD 258 +RL V G+ + + + + I G VTVNG+ +AP KVD++++ Sbjct: 105 RRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEE 151
>ATPF_STAHJ (Q4L7Y8) ATP synthase B chain (EC 3.6.3.14)| Length = 176 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/88 (27%), Positives = 44/88 (50%) Frame = +1 Query: 133 KVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPPKLY 312 ++L A V +R+ EE+I + + NG + TA Q++++ K+ + N +L + Sbjct: 91 RILEDARVQARKQHEEIIHEANIRANGMIETA-QSEINSEKERALADINNQVSELSVLIA 149 Query: 313 FAVNKPKGYICSSGEEKSVISLLDDYLK 396 V K + S ++K L+D YLK Sbjct: 150 SKVLKKE---ISEQDQK---ELVDKYLK 171
>RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 344 Score = 29.6 bits (65), Expect = 6.9 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Frame = +1 Query: 286 SKKLPPKLYFA------VNKPKGYICSSGEEKSVISLLDDYLKGWNKLQPGVPKPRLFTV 447 ++ +P K+ F ++KP G + G +LL+ L +L PR V Sbjct: 104 AEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQ---VPRAGIV 160 Query: 448 GRLDVATTGLIIV--TNDGEFAQKVSHPSSNITKEYVVTIDGAVHKKHLV 591 RLD TTGL++V T + +F + + Y+ + G + K +V Sbjct: 161 HRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVV 210
>Y073_BACHD (Q9KGI8) Hypothetical protein BH0073| Length = 88 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Frame = +1 Query: 124 RLAKVLAAAGVASRRT-SEELIFQGKVTVNGSVCTA 228 RL K L + + RRT ++E+ QG++TVNG+V A Sbjct: 2 RLDKFLKVSRLIKRRTLAKEVCEQGRITVNGNVAKA 37
>SYD_LISMO (Q8Y709) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 591 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = +1 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKK 582 G++ V + EF+++ + ++ E+VVTI G VH + Sbjct: 45 GIVQVVFNPEFSKEALEIADSVRNEFVVTIKGTVHAR 81
>SYD_LISMF (Q71ZF1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 591 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = +1 Query: 472 GLIIVTNDGEFAQKVSHPSSNITKEYVVTIDGAVHKK 582 G++ V + EF+++ + ++ E+VVTI G VH + Sbjct: 45 GIVQVVFNPEFSKEALEIADSVRNEFVVTIKGTVHAR 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,523,513 Number of Sequences: 219361 Number of extensions: 1684716 Number of successful extensions: 3573 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 3451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3515 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
