Clone Name | bags9c17 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478169.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1179 Score = 377 bits (190), Expect = e-101 Identities = 359/414 (86%), Gaps = 1/414 (0%) Strand = Plus / Plus Query: 169 tgcttcagcagaacaagaagattcaggaagccaaccgtgcacctgatgatttcccaaact 228 |||||||||||||||||||||| |||||||||||||| || ||||| ||||| || || | Sbjct: 363 tgcttcagcagaacaagaagatccaggaagccaaccgggctcctgacgattttccgaatt 422 Query: 229 tcatcagagaaggttttcaggtcaaagtagtgacacccgacaactacataacacgggatt 288 ||||||| |||||||| | ||||||||||||||| | |||||||||||||| || || | Sbjct: 423 tcatcagggaaggtttcgaagtcaaagtagtgacatctgacaactacataacgcgagact 482 Query: 289 ccggattaatatatgaggatgtcaaagttggtacaggcgattgcccgaaggatggtcagc 348 | || || | |||||||| ||||||||||||| ||| | | || ||||||||||||| Sbjct: 483 ctgggctactgtatgaggacatcaaagttggtacgggcaactctccaaaggatggtcagc 542 Query: 349 aggttatatttcactatgtgggctacaacgaatcaggacgaaggatagatagcacctaca 408 |||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||| Sbjct: 543 aggttatatttcactatgtgggctacaatgagtcagggcgcaggatagatagcacctaca 602 Query: 409 tccagggttcgcctgccaaaattcggctaggcaacaaatcattagttccaggttttgaag 468 | |||||||| ||||||||||||||| |||| |||||| || | |||||||||||||||| Sbjct: 603 ttcagggttcacctgccaaaattcggttagggaacaaaacactggttccaggttttgaag 662 Query: 469 aggggattcgggacatgaaaccaggggggaagagaagactaattatacctcctgagcttg 528 | ||||| ||||||||||||||||| || ||||||||| | ||||||||||| ||||||| Sbjct: 663 aagggatacgggacatgaaaccaggtggtaagagaagaattattatacctccagagcttg 722 Query: 529 gtcctcctgttgggccattcgacgttcttcagcgcgaaacagtttgaagtattc 582 |||||||||||||||| || || |||||||| ||||| ||||| || |||||| Sbjct: 723 gtcctcctgttgggcc-gtcaacattcttcagtgcgaagcagttcgaggtattc 775
>dbj|AK067941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121F22, full insert sequence Length = 1179 Score = 377 bits (190), Expect = e-101 Identities = 359/414 (86%), Gaps = 1/414 (0%) Strand = Plus / Plus Query: 169 tgcttcagcagaacaagaagattcaggaagccaaccgtgcacctgatgatttcccaaact 228 |||||||||||||||||||||| |||||||||||||| || ||||| ||||| || || | Sbjct: 363 tgcttcagcagaacaagaagatccaggaagccaaccgggctcctgacgattttccgaatt 422 Query: 229 tcatcagagaaggttttcaggtcaaagtagtgacacccgacaactacataacacgggatt 288 ||||||| |||||||| | ||||||||||||||| | |||||||||||||| || || | Sbjct: 423 tcatcagggaaggtttcgaagtcaaagtagtgacatctgacaactacataacgcgagact 482 Query: 289 ccggattaatatatgaggatgtcaaagttggtacaggcgattgcccgaaggatggtcagc 348 | || || | |||||||| ||||||||||||| ||| | | || ||||||||||||| Sbjct: 483 ctgggctactgtatgaggacatcaaagttggtacgggcaactctccaaaggatggtcagc 542 Query: 349 aggttatatttcactatgtgggctacaacgaatcaggacgaaggatagatagcacctaca 408 |||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||| Sbjct: 543 aggttatatttcactatgtgggctacaatgagtcagggcgcaggatagatagcacctaca 602 Query: 409 tccagggttcgcctgccaaaattcggctaggcaacaaatcattagttccaggttttgaag 468 | |||||||| ||||||||||||||| |||| |||||| || | |||||||||||||||| Sbjct: 603 ttcagggttcacctgccaaaattcggttagggaacaaaacactggttccaggttttgaag 662 Query: 469 aggggattcgggacatgaaaccaggggggaagagaagactaattatacctcctgagcttg 528 | ||||| ||||||||||||||||| || ||||||||| | ||||||||||| ||||||| Sbjct: 663 aagggatacgggacatgaaaccaggtggtaagagaagaattattatacctccagagcttg 722 Query: 529 gtcctcctgttgggccattcgacgttcttcagcgcgaaacagtttgaagtattc 582 |||||||||||||||| || || |||||||| ||||| ||||| || |||||| Sbjct: 723 gtcctcctgttgggcc-gtcaacattcttcagtgcgaagcagttcgaggtattc 775
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 137 bits (69), Expect = 5e-29 Identities = 102/113 (90%) Strand = Plus / Plus Query: 348 caggttatatttcactatgtgggctacaacgaatcaggacgaaggatagatagcacctac 407 ||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||| Sbjct: 18176550 caggttatatttcactatgtgggctacaatgagtcagggcgcaggatagatagcacctac 18176609 Query: 408 atccagggttcgcctgccaaaattcggctaggcaacaaatcattagttccagg 460 || |||||||| ||||||||||||||| |||| |||||| || | |||||||| Sbjct: 18176610 attcagggttcacctgccaaaattcggttagggaacaaaacactggttccagg 18176662 Score = 107 bits (54), Expect = 4e-20 Identities = 75/82 (91%) Strand = Plus / Plus Query: 457 caggttttgaagaggggattcgggacatgaaaccaggggggaagagaagactaattatac 516 ||||||||||||| ||||| ||||||||||||||||| || ||||||||| | ||||||| Sbjct: 18176836 caggttttgaagaagggatacgggacatgaaaccaggtggtaagagaagaattattatac 18176895 Query: 517 ctcctgagcttggtcctcctgt 538 |||| ||||||||||||||||| Sbjct: 18176896 ctccagagcttggtcctcctgt 18176917 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 169 tgcttcagcagaacaagaagattcaggaagccaaccgtgcacctgatgatttcccaaact 228 |||||||||||||||||||||| |||||||||||||| || ||||| ||||| || || | Sbjct: 18175624 tgcttcagcagaacaagaagatccaggaagccaaccgggctcctgacgattttccgaatt 18175683 Query: 229 tcatcagagaaggt 242 ||||||| |||||| Sbjct: 18175684 tcatcagggaaggt 18175697 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/105 (82%) Strand = Plus / Plus Query: 249 gtcaaagtagtgacacccgacaactacataacacgggattccggattaatatatgaggat 308 ||||||||||||||| | |||||||||||||| || || || || || | |||||||| Sbjct: 18176076 gtcaaagtagtgacatctgacaactacataacgcgagactctgggctactgtatgaggac 18176135 Query: 309 gtcaaagttggtacaggcgattgcccgaaggatggtcagcaggtt 353 ||||||||||||| ||| | | || |||||||||||||||||| Sbjct: 18176136 atcaaagttggtacgggcaactctccaaaggatggtcagcaggtt 18176180
>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0477A12 Length = 138141 Score = 137 bits (69), Expect = 5e-29 Identities = 102/113 (90%) Strand = Plus / Plus Query: 348 caggttatatttcactatgtgggctacaacgaatcaggacgaaggatagatagcacctac 407 ||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||| Sbjct: 111856 caggttatatttcactatgtgggctacaatgagtcagggcgcaggatagatagcacctac 111915 Query: 408 atccagggttcgcctgccaaaattcggctaggcaacaaatcattagttccagg 460 || |||||||| ||||||||||||||| |||| |||||| || | |||||||| Sbjct: 111916 attcagggttcacctgccaaaattcggttagggaacaaaacactggttccagg 111968 Score = 107 bits (54), Expect = 4e-20 Identities = 75/82 (91%) Strand = Plus / Plus Query: 457 caggttttgaagaggggattcgggacatgaaaccaggggggaagagaagactaattatac 516 ||||||||||||| ||||| ||||||||||||||||| || ||||||||| | ||||||| Sbjct: 112142 caggttttgaagaagggatacgggacatgaaaccaggtggtaagagaagaattattatac 112201 Query: 517 ctcctgagcttggtcctcctgt 538 |||| ||||||||||||||||| Sbjct: 112202 ctccagagcttggtcctcctgt 112223 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 169 tgcttcagcagaacaagaagattcaggaagccaaccgtgcacctgatgatttcccaaact 228 |||||||||||||||||||||| |||||||||||||| || ||||| ||||| || || | Sbjct: 110930 tgcttcagcagaacaagaagatccaggaagccaaccgggctcctgacgattttccgaatt 110989 Query: 229 tcatcagagaaggt 242 ||||||| |||||| Sbjct: 110990 tcatcagggaaggt 111003 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/105 (82%) Strand = Plus / Plus Query: 249 gtcaaagtagtgacacccgacaactacataacacgggattccggattaatatatgaggat 308 ||||||||||||||| | |||||||||||||| || || || || || | |||||||| Sbjct: 111382 gtcaaagtagtgacatctgacaactacataacgcgagactctgggctactgtatgaggac 111441 Query: 309 gtcaaagttggtacaggcgattgcccgaaggatggtcagcaggtt 353 ||||||||||||| ||| | | || |||||||||||||||||| Sbjct: 111442 atcaaagttggtacgggcaactctccaaaggatggtcagcaggtt 111486
>gb|AC109039.10| Rattus norvegicus 1 BAC CH230-145B9 (Children's Hospital Oakland Research Institute) complete sequence Length = 215780 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 77 tcttgctctgttctttgctaca 98 |||||||||||||||||||||| Sbjct: 156987 tcttgctctgttctttgctaca 156966
>gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, complete sequence Length = 124740 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 atcattagttccaggttttgaa 467 |||||||||||||||||||||| Sbjct: 117823 atcattagttccaggttttgaa 117844
>gb|AC124226.12| Mus musculus chromosome 15, clone RP23-94G21, complete sequence Length = 189787 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 aaaaccataaatccttatgag 158 ||||||||||||||||||||| Sbjct: 32323 aaaaccataaatccttatgag 32303
>emb|CR847534.13| Zebrafish DNA sequence from clone DKEY-27E20 in linkage group 3, complete sequence Length = 211145 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 cttcagcagaacaagaagatt 191 ||||||||||||||||||||| Sbjct: 137123 cttcagcagaacaagaagatt 137143
>gb|AC159647.2| Mus musculus BAC clone RP23-66A14 from chromosome 12, complete sequence Length = 213946 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 ttgcttcagcagaacaagaag 188 ||||||||||||||||||||| Sbjct: 155930 ttgcttcagcagaacaagaag 155910
>gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, complete sequence Length = 178779 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 348 caggttatatttcactatgtgggct 372 |||||||||||||||| |||||||| Sbjct: 143336 caggttatatttcactctgtgggct 143360
>gb|AC160134.2| Mus musculus BAC clone RP23-139G11 from chromosome 9, complete sequence Length = 176272 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 tcatcagagaaggttttcaggtca 252 ||||||||||| |||||||||||| Sbjct: 129837 tcatcagagaaagttttcaggtca 129814
>ref|XM_456160.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F24244g predicted mRNA Length = 2784 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 atatgaggatgtcaaagttg 318 |||||||||||||||||||| Sbjct: 477 atatgaggatgtcaaagttg 496
>emb|BX908793.14| Zebrafish DNA sequence from clone DKEY-104G4 in linkage group 3, complete sequence Length = 102377 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ataaatccttatgaggaaag 163 |||||||||||||||||||| Sbjct: 75569 ataaatccttatgaggaaag 75550
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 atatgaggatgtcaaagttg 318 |||||||||||||||||||| Sbjct: 2264117 atatgaggatgtcaaagttg 2264098
>gb|AC116560.5| Ustilago hordei clone uhobac-4k21, complete sequence Length = 100958 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 518 tcctgagcttggtcctcctgttgg 541 ||||||||||||||||||| |||| Sbjct: 16951 tcctgagcttggtcctcctcttgg 16928 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 518 tcctgagcttggtcctcctgttgg 541 ||||||||||||||||||| |||| Sbjct: 5006 tcctgagcttggtcctcctcttgg 4983
>gb|AC114899.5| Ustilago hordei strain 4875-4 clone uhobac-1n1, complete sequence Length = 100185 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 tcctgagcttggtcctcctgttgg 541 ||||||||||||||||||| |||| Sbjct: 52755 tcctgagcttggtcctcctcttgg 52778 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 tcctgagcttggtcctcctgttgg 541 ||||||||||||||||||| |||| Sbjct: 40810 tcctgagcttggtcctcctcttgg 40833
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 acaacgaatcaggacgaaggatag 396 |||||||||| ||||||||||||| Sbjct: 21321934 acaacgaatctggacgaaggatag 21321911
>gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, complete sequence Length = 175490 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ttaatatatgaggatgtcaa 313 |||||||||||||||||||| Sbjct: 137037 ttaatatatgaggatgtcaa 137018
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 acaacgaatcaggacgaaggatag 396 |||||||||| ||||||||||||| Sbjct: 117310 acaacgaatctggacgaaggatag 117287
>emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 in linkage group 19, complete sequence Length = 171679 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 agcaggttatatttcactat 365 |||||||||||||||||||| Sbjct: 102615 agcaggttatatttcactat 102634
>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364 Length = 526707 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 tcctgagcttggtcctcctgttgg 541 ||||||||||||||||||| |||| Sbjct: 326760 tcctgagcttggtcctcctcttgg 326783 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 tcctgagcttggtcctcctgttgg 541 ||||||||||||||||||| |||| Sbjct: 314815 tcctgagcttggtcctcctcttgg 314838
>emb|AL929150.12| Zebrafish DNA sequence from clone CH211-196H16 in linkage group 1, complete sequence Length = 229480 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 gagaaggttttcaggtcaaagtag 258 ||||||||||||| |||||||||| Sbjct: 51079 gagaaggttttcaagtcaaagtag 51056
>emb|AL672089.17| Mouse DNA sequence from clone RP23-295D9 on chromosome X, complete sequence Length = 215390 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ctcttgctctgttctttgct 95 |||||||||||||||||||| Sbjct: 112322 ctcttgctctgttctttgct 112303
>gb|AC055854.14| Homo sapiens chromosome 8, clone RP11-459E5, complete sequence Length = 138388 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 aggttttgaagaggggattc 477 |||||||||||||||||||| Sbjct: 33607 aggttttgaagaggggattc 33588 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,618,387 Number of Sequences: 3902068 Number of extensions: 4618387 Number of successful extensions: 77510 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77210 Number of HSP's gapped (non-prelim): 296 length of query: 610 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 587 effective length of database: 17,143,297,704 effective search space: 10063115752248 effective search space used: 10063115752248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)