Clone Information

BLAST Search Result

Clone Name	bags9c16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AP2S1_MAIZE (O50016) AP-2 complex subunit sigma-1 (Clathrin coat...	257	2e-68
2	AP2S_NEUCR (Q7SAQ1) AP-2 complex subunit sigma (Clathrin assembl...	203	3e-52
3	AP2S_GIBZE (Q4ICG5) AP-2 complex subunit sigma (Clathrin assembl...	196	4e-50
4	AP2S_ASPFU (Q4WS49) AP-2 complex subunit sigma (Clathrin assembl...	196	6e-50
5	AP2S_EMENI (Q5BFF8) AP-2 complex subunit sigma (Clathrin assembl...	194	2e-49
6	AP2S1_RAT (P62744) AP-2 complex subunit sigma-1 (Adapter-related...	186	4e-47
7	AP2S1_PONPY (Q5R940) AP-2 complex subunit sigma-1 (Adapter-relat...	186	4e-47
8	AP2S1_MOUSE (P62743) AP-2 complex subunit sigma-1 (Adapter-relat...	186	4e-47
9	AP2S1_HUMAN (P53680) AP-2 complex subunit sigma-1 (Adapter-relat...	186	4e-47
10	AP2S_SCHPO (Q9Y7L6) AP-2 complex subunit sigma (Clathrin assembl...	181	2e-45
11	AP1S2_HUMAN (P56377) AP-1 complex subunit sigma-2 (Adapter-relat...	155	7e-38
12	AP1S2_MOUSE (Q9DB50) AP-1 complex subunit sigma-2 (Adapter-relat...	155	1e-37
13	AP1S1_MOUSE (P61967) AP-1 complex subunit sigma-1A (Adapter-rela...	150	2e-36
14	AP1S1_HUMAN (P61966) AP-1 complex subunit sigma-1A (Adapter-rela...	150	2e-36
15	AP1S3_HUMAN (Q96PC3) AP-1 complex subunit sigma-3 (Adapter-relat...	150	3e-36
16	AP1S3_MOUSE (Q7TN05) AP-1 complex subunit sigma-3 (Adapter-relat...	147	3e-35
17	AP2S_YEAST (Q00381) AP-2 complex subunit sigma (Clathrin assembl...	139	5e-33
18	AP1T1_YEAST (P35181) AP-1 complex subunit theta-1 (Theta(1)-adap...	129	1e-29
19	AP4S1_MOUSE (Q9WVL1) AP-4 complex subunit sigma-1 (Adapter-relat...	124	3e-28
20	AP4S1_HUMAN (Q9Y587) AP-4 complex subunit sigma-1 (Adapter-relat...	123	5e-28
21	AP3S1_MOUSE (Q9DCR2) AP-3 complex subunit sigma-1 (Adapter-relat...	114	3e-25
22	AP3S1_HUMAN (Q92572) AP-3 complex subunit sigma-1 (Adapter-relat...	114	3e-25
23	AP3S2_PONPY (Q5RDP9) AP-3 complex subunit sigma-2 (Adapter-relat...	112	1e-24
24	AP3S2_MOUSE (Q8BSZ2) AP-3 complex subunit sigma-2 (Adapter-relat...	112	1e-24
25	AP3S2_HUMAN (P59780) AP-3 complex subunit sigma-2 (Adapter-relat...	112	1e-24
26	AP3S_SCHPO (Q09905) AP-3 complex subunit sigma (Adapter-related ...	103	3e-22
27	AP3S_ASHGO (Q75F71) AP-3 complex subunit sigma (Adapter-related ...	86	1e-16
28	AP3S_YEAST (P47064) AP-3 complex subunit sigma (Adapter-related ...	82	2e-15
29	COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protei...	48	3e-05
30	COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Z...	45	1e-04
31	COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protei...	45	1e-04
32	AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin c...	39	0.013
33	AP2M_DICDI (P54672) AP-2 complex subunit mu (Clathrin coat assem...	36	0.084
34	COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) ...	35	0.25
35	VE02_VARV (P33862) Protein E2	32	2.1
36	GCDC_ACIFE (Q9ZAA7) Glutaconyl-CoA decarboxylase gamma subunit (...	32	2.1
37	YT15_CAEEL (Q10918) Hypothetical protein B0252.5	32	2.1
38	YQ51_CAEEL (Q09461) Putative mitochondrial carrier C16C10.1	31	2.7
39	AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assem...	31	2.7
40	VE02_VACCV (P21604) Protein E2	31	3.5
41	VE02_VACCC (P21080) Protein E2	31	3.5
42	LRC8A_RAT (Q4V8I7) Leucine-rich repeat-containing protein 8A	30	6.0
43	LRC8A_MOUSE (Q80WG5) Leucine-rich repeat-containing protein 8A	30	6.0
44	LRC8A_HUMAN (Q8IWT6) Leucine-rich repeat-containing protein 8A	30	6.0
45	AMO_PEA (Q43077) Amine oxidase [copper-containing] precursor (EC...	30	6.0
46	THI1_SCHPO (P36598) Thiamine repressible genes regulatory protei...	30	7.9
47	AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (...	30	7.9

>AP2S1_MAIZE (O50016) AP-2 complex subunit sigma-1 (Clathrin coat assembly|
           protein AP17) (Clathrin coat-associated protein AP17)
           (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin
           assembly protein 2 small chain)
          Length = 132

 Score =  257 bits (656), Expect = 2e-68
 Identities = 127/131 (96%), Positives = 128/131 (97%), Gaps = 2/131 (1%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKV--YLILDEFI 478
           RYAGLFFSICVDITDNEL YLECIHLFVEILDHFFSNVCELDLVFNFHKV  YLILDEFI
Sbjct: 61  RYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFI 120

Query: 479 LAGELQETSKK 511
           LAGELQETSK+
Sbjct: 121 LAGELQETSKR 131

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>AP2S_NEUCR (Q7SAQ1) AP-2 complex subunit sigma (Clathrin assembly protein 2|
           small chain) (Adaptin small chain)
          Length = 143

 Score =  203 bits (517), Expect = 3e-52
 Identities = 97/143 (67%), Positives = 116/143 (81%), Gaps = 1/143 (0%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 301
           M+ FIL+QNRQGKTRLAK+YVP  D EK K++ E+HRLV  RD K+ +NFVEFR HKV+Y
Sbjct: 1   MLSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVY 60

Query: 302 RRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 481
           RRYAGLFF  CVD  DNEL YLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct: 61  RRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFL 120

Query: 482 AGELQETSKKAIIERMGELEKLD 550
           AGE++ETSK+ ++ R+  L+KL+
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143

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>AP2S_GIBZE (Q4ICG5) AP-2 complex subunit sigma (Clathrin assembly protein 2|
           small chain) (Adaptin small chain)
          Length = 143

 Score =  196 bits (499), Expect = 4e-50
 Identities = 93/143 (65%), Positives = 115/143 (80%), Gaps = 1/143 (0%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 301
           M+ FIL+QNRQGKTRLAK+Y P  D +K K++ EVHRLV  RD K+ +NFVEFR +K++Y
Sbjct: 1   MLSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVY 60

Query: 302 RRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 481
           RRYAGLFF  CVD  DNEL +LE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct: 61  RRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFL 120

Query: 482 AGELQETSKKAIIERMGELEKLD 550
           AGE++ETSK+ ++ R+  L+KL+
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143

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>AP2S_ASPFU (Q4WS49) AP-2 complex subunit sigma (Clathrin assembly protein 2|
           small chain) (Adaptin small chain)
          Length = 145

 Score =  196 bits (497), Expect = 6e-50
 Identities = 95/144 (65%), Positives = 117/144 (81%), Gaps = 2/144 (1%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 298
           ++ FIL+QNRQGKTRLAK+Y P  D EK K++ EVHRLV  RD K+ +NFVEF R+ K++
Sbjct: 2   VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61

Query: 299 YRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 478
           YRRYAGLFF +CVD TDNEL YLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  
Sbjct: 62  YRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121

Query: 479 LAGELQETSKKAIIERMGELEKLD 550
           LAGE++ETSK+ ++ R+  L+KL+
Sbjct: 122 LAGEIEETSKQVVLTRLEHLDKLE 145

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>AP2S_EMENI (Q5BFF8) AP-2 complex subunit sigma (Clathrin assembly protein 2|
           small chain) (Adaptin small chain)
          Length = 145

 Score =  194 bits (493), Expect = 2e-49
 Identities = 95/144 (65%), Positives = 116/144 (80%), Gaps = 2/144 (1%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 298
           ++ FIL+QNRQGKTRLAK+Y P  D EK K++ EVHRLV  RD K+ +NFVEF R+ K++
Sbjct: 2   VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61

Query: 299 YRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 478
           YRRYAGLFF  CVD TDNEL YLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  
Sbjct: 62  YRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121

Query: 479 LAGELQETSKKAIIERMGELEKLD 550
           LAGE++ETSK+ ++ R+  L+KL+
Sbjct: 122 LAGEIEETSKQVVLTRLEHLDKLE 145

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>AP2S1_RAT (P62744) AP-2 complex subunit sigma-1 (Adapter-related protein|
           complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin
           coat assembly protein AP17) (Clathrin coat-associated
           protein AP17) (Plasma membrane adaptor AP-2 17 kDa
           protein) (Clathrin a
          Length = 142

 Score =  186 bits (473), Expect = 4e-47
 Identities = 87/142 (61%), Positives = 112/142 (78%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           RYAGL+F ICVD+ DN L YLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 485 GELQETSKKAIIERMGELEKLD 550
           GE++ETS+  +++++  L+ L+
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

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>AP2S1_PONPY (Q5R940) AP-2 complex subunit sigma-1 (Adapter-related protein|
           complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin
           coat assembly protein AP17) (Clathrin coat-associated
           protein AP17) (Plasma membrane adaptor AP-2 17 kDa
           protein) (Clathrin
          Length = 142

 Score =  186 bits (473), Expect = 4e-47
 Identities = 87/142 (61%), Positives = 112/142 (78%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           RYAGL+F ICVD+ DN L YLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 485 GELQETSKKAIIERMGELEKLD 550
           GE++ETS+  +++++  L+ L+
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

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>AP2S1_MOUSE (P62743) AP-2 complex subunit sigma-1 (Adapter-related protein|
           complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin
           coat assembly protein AP17) (Clathrin coat-associated
           protein AP17) (Plasma membrane adaptor AP-2 17 kDa
           protein) (Clathrin
          Length = 142

 Score =  186 bits (473), Expect = 4e-47
 Identities = 87/142 (61%), Positives = 112/142 (78%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           RYAGL+F ICVD+ DN L YLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 485 GELQETSKKAIIERMGELEKLD 550
           GE++ETS+  +++++  L+ L+
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

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>AP2S1_HUMAN (P53680) AP-2 complex subunit sigma-1 (Adapter-related protein|
           complex 2 sigma-1 subunit) (Clathrin coat assembly
           protein AP17) (Clathrin coat-associated protein AP17)
           (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17
           kDa subunit) (Clathr
          Length = 142

 Score =  186 bits (473), Expect = 4e-47
 Identities = 87/142 (61%), Positives = 112/142 (78%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           RYAGL+F ICVD+ DN L YLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 485 GELQETSKKAIIERMGELEKLD 550
           GE++ETS+  +++++  L+ L+
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

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>AP2S_SCHPO (Q9Y7L6) AP-2 complex subunit sigma (Clathrin assembly protein 2|
           small chain) (Adaptin small chain)
          Length = 143

 Score =  181 bits (459), Expect = 2e-45
 Identities = 85/143 (59%), Positives = 112/143 (78%), Gaps = 1/143 (0%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 301
           MI+FIL+QNR GK RL+KYYVP +D EK +++  +H+L+  R+ KF  NF+E+   K++Y
Sbjct: 1   MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60

Query: 302 RRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 481
           RRYAGL+F  CVD TDN+L  LE IH FVEILD FF NVCELDL+FNF+KV  ILDE IL
Sbjct: 61  RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120

Query: 482 AGELQETSKKAIIERMGELEKLD 550
            GE+ E++KK+++ER+  LEKL+
Sbjct: 121 GGEIGESNKKSVLERIEALEKLE 143

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>AP1S2_HUMAN (P56377) AP-1 complex subunit sigma-2 (Adapter-related protein|
           complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor
           protein complex AP-1 sigma-1B subunit) (Golgi adaptor
           HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly
           protein complex
          Length = 157

 Score =  155 bits (393), Expect = 7e-38
 Identities = 75/151 (49%), Positives = 108/151 (71%)
 Frame = +2

Query: 128 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 307
           ++F+LL +RQGK RL K+YVPL D EK K+  E+ + V+ R PK  +F+E+R  K++Y+R
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 308 YAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 487
           YA L+F   ++  DNEL+ LE IH +VE+LD +F +VCELD++FNF K Y ILDEF+L G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 488 ELQETSKKAIIERMGELEKLD*EENVLPACV 580
           E+QETSKK +++ + + + L  EE   P  V
Sbjct: 121 EVQETSKKNVLKAIEQADLLQ-EEAETPRSV 150

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>AP1S2_MOUSE (Q9DB50) AP-1 complex subunit sigma-2 (Adapter-related protein|
           complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor
           protein complex AP-1 sigma-1B subunit) (Golgi adaptor
           HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly
           protein complex
          Length = 160

 Score =  155 bits (391), Expect = 1e-37
 Identities = 71/140 (50%), Positives = 104/140 (74%)
 Frame = +2

Query: 128 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 307
           ++F+LL +RQGK RL K+YVPL D EK K+  E+ + V+ R PK  +F+E+R  K++Y+R
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 308 YAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 487
           YA L+F   ++  DNEL+ LE IH +VE+LD +F +VCELD++FNF K Y ILDEF+L G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 488 ELQETSKKAIIERMGELEKL 547
           E+QETSKK +++ + + + L
Sbjct: 121 EVQETSKKNVLKAIEQADLL 140

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>AP1S1_MOUSE (P61967) AP-1 complex subunit sigma-1A (Adapter-related protein|
           complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor
           protein complex AP-1 sigma-1A subunit) (Golgi adaptor
           HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly
           protein complex
          Length = 158

 Score =  150 bits (380), Expect = 2e-36
 Identities = 71/152 (46%), Positives = 110/152 (72%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           M+RF+LL +RQGK RL K+Y+   D E+ K+  E+ ++V+ R PK  +F+E+R  KV+Y+
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           RYA L+F   ++  DNEL+ LE IH +VE+LD +F +VCELD++FNF K Y ILDEF++ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120

Query: 485 GELQETSKKAIIERMGELEKLD*EENVLPACV 580
           G++Q+TSKK++++ + + + L  EE+  P  V
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQ-EEDESPRSV 151

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>AP1S1_HUMAN (P61966) AP-1 complex subunit sigma-1A (Adapter-related protein|
           complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor
           protein complex AP-1 sigma-1A subunit) (Golgi adaptor
           HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly
           protein complex
          Length = 158

 Score =  150 bits (380), Expect = 2e-36
 Identities = 71/152 (46%), Positives = 110/152 (72%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           M+RF+LL +RQGK RL K+Y+   D E+ K+  E+ ++V+ R PK  +F+E+R  KV+Y+
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           RYA L+F   ++  DNEL+ LE IH +VE+LD +F +VCELD++FNF K Y ILDEF++ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120

Query: 485 GELQETSKKAIIERMGELEKLD*EENVLPACV 580
           G++Q+TSKK++++ + + + L  EE+  P  V
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQ-EEDESPRSV 151

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>AP1S3_HUMAN (Q96PC3) AP-1 complex subunit sigma-3 (Adapter-related protein|
           complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor
           protein complex AP-1 sigma-1C subunit) (Golgi adaptor
           HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly
           protein complex
          Length = 154

 Score =  150 bits (379), Expect = 3e-36
 Identities = 67/141 (47%), Positives = 104/141 (73%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MI FILL +RQGK RL K+Y+ L D E+ K+  E+ +++++R  + ++FV+++  K++Y+
Sbjct: 1   MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           RYA L+F   ++  DNEL+ LE +H +VE+LD +F NVCELD++FNF K Y ILDEFI+ 
Sbjct: 61  RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120

Query: 485 GELQETSKKAIIERMGELEKL 547
           GE+QETSKK  ++ + + + L
Sbjct: 121 GEIQETSKKIAVKAIEDSDML 141

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>AP1S3_MOUSE (Q7TN05) AP-1 complex subunit sigma-3 (Adapter-related protein|
           complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor
           protein complex AP-1 sigma-1C subunit) (Golgi adaptor
           HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly
           protein complex
          Length = 154

 Score =  147 bits (371), Expect = 3e-35
 Identities = 66/141 (46%), Positives = 102/141 (72%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MI FILL +RQGK RL K+Y  L D E+ K+  ++ + V++R  + ++F++++  K++Y+
Sbjct: 1   MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYK 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           RYA L+F   ++  DNEL+ LE +H +VE+LD +F NVCELD++FNF K Y ILDEFI+ 
Sbjct: 61  RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120

Query: 485 GELQETSKKAIIERMGELEKL 547
           GE+QETSKK  ++ + + + L
Sbjct: 121 GEIQETSKKTAVKAIEDSDML 141

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>AP2S_YEAST (Q00381) AP-2 complex subunit sigma (Clathrin assembly protein 2|
           small chain) (Adaptin small chain) (Clathrin coat
           assembly protein AP17) (Clathrin coat-associated protein
           AP17) (Plasma membrane adaptor AP-2 17 kDa protein)
          Length = 147

 Score =  139 bits (351), Expect = 5e-33
 Identities = 73/145 (50%), Positives = 107/145 (73%), Gaps = 4/145 (2%)
 Frame = +2

Query: 128 IRFILLQNRQGKTRLAKYY-VPLEDSEKHKVEY-EVHRLVVNRDPKF-TNFVEFR-THKV 295
           ++FIL  N+QG  RL +++ V   D ++ +    +++RL+ +RD K  +NFVEF  + K+
Sbjct: 3   VQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDSTKL 62

Query: 296 IYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEF 475
           IYRRYAGL+F + VD+ D+E +YL  IHLFVE+LD FF NVCELD+VFNF+KVY+I+DE 
Sbjct: 63  IYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMDEM 122

Query: 476 ILAGELQETSKKAIIERMGELEKLD 550
            + GE+QE SK  ++ER+  L++LD
Sbjct: 123 FIGGEIQEISKDMLLERLSILDRLD 147

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>AP1T1_YEAST (P35181) AP-1 complex subunit theta-1 (Theta(1)-adaptin) (Clathrin|
           coat assembly protein AP19) (Clathrin coat-associated
           protein AP19) (Golgi adaptor AP-1 19 kDa adaptin) (HA1
           19 kDa subunit) (Clathrin assembly protein complex 1
           small chain)
          Length = 156

 Score =  129 bits (323), Expect = 1e-29
 Identities = 61/150 (40%), Positives = 99/150 (66%), Gaps = 2/150 (1%)
 Frame = +2

Query: 122 SMIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIY 301
           + ++++LL +RQGK RL K+Y  +   EK K+  ++   ++ R PK  N +E+  HKV+Y
Sbjct: 2   TQLKYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVY 61

Query: 302 RRYAGLFFSI-CVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 478
           +RYA L+F +      DNEL+ LE IH FVE +D +F NVCELD++FNF KVY IL+E I
Sbjct: 62  KRYASLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMI 121

Query: 479 LA-GELQETSKKAIIERMGELEKLD*EENV 565
           +  G + E+S+K ++  +  ++ ++  +N+
Sbjct: 122 MCDGSIAESSRKEVLHHVTVMDTMESNDNL 151

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>AP4S1_MOUSE (Q9WVL1) AP-4 complex subunit sigma-1 (Adapter-related protein|
           complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4
           adapter complex sigma subunit)
          Length = 144

 Score =  124 bits (310), Expect = 3e-28
 Identities = 61/141 (43%), Positives = 99/141 (70%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MI+F L+ N+QG+TRL+KYY  ++ +++  +E EV +  ++R  +  +F+E++  K+IYR
Sbjct: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYR 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           +YA LF  + V+ T+NE+   E IH FVE+LD +FS V ELD++FN  KV++ILDE +L 
Sbjct: 61  QYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLN 120

Query: 485 GELQETSKKAIIERMGELEKL 547
           G + ET++  I+  +  L+KL
Sbjct: 121 GCIVETNRARILAPLLILDKL 141

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>AP4S1_HUMAN (Q9Y587) AP-4 complex subunit sigma-1 (Adapter-related protein|
           complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4
           adapter complex sigma subunit)
          Length = 144

 Score =  123 bits (308), Expect = 5e-28
 Identities = 60/141 (42%), Positives = 99/141 (70%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MI+F L+ N+QG+TRL+KYY  ++ +++  +E EV +  ++R  +  +F+E++  K+IYR
Sbjct: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           +YA LF  + V+ T+NE+   E IH FVE+LD +FS V ELD++FN  KV++ILDE +L 
Sbjct: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120

Query: 485 GELQETSKKAIIERMGELEKL 547
           G + ET++  I+  +  L+K+
Sbjct: 121 GCIVETNRARILAPLLILDKM 141

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>AP3S1_MOUSE (Q9DCR2) AP-3 complex subunit sigma-1 (Adapter-related protein|
           complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3
           complex sigma-3A subunit) (Sigma-3A-adaptin)
          Length = 193

 Score =  114 bits (284), Expect = 3e-25
 Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF------RT 286
           MI+ IL+ N  GK RL+K+Y P  +  + ++  E   LV  RD    NF+E         
Sbjct: 1   MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60

Query: 287 HKVIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 466
           +K+IYR YA L+F  CVD +++EL  L+ I +FVE LD  F NVCELDL+F+  KV+ IL
Sbjct: 61  NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120

Query: 467 DEFILAGELQETSKKAIIERMGELEKLD*EENVLPACVGR*LKARAKPITSAMPNN 634
            E ++ G + ET+   I+ ++    KL+  E  L     R + A        +P N
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRN 176

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>AP3S1_HUMAN (Q92572) AP-3 complex subunit sigma-1 (Adapter-related protein|
           complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3
           complex sigma-3A subunit) (Sigma-3A-adaptin)
           (Clathrin-associated/assembly/adapter protein, small 3)
          Length = 193

 Score =  114 bits (284), Expect = 3e-25
 Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF------RT 286
           MI+ IL+ N  GK RL+K+Y P  +  + ++  E   LV  RD    NF+E         
Sbjct: 1   MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60

Query: 287 HKVIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 466
           +K+IYR YA L+F  CVD +++EL  L+ I +FVE LD  F NVCELDL+F+  KV+ IL
Sbjct: 61  NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120

Query: 467 DEFILAGELQETSKKAIIERMGELEKLD*EENVLPACVGR*LKARAKPITSAMPNN 634
            E ++ G + ET+   I+ ++    KL+  E  L     R + A        +P N
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRN 176

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>AP3S2_PONPY (Q5RDP9) AP-3 complex subunit sigma-2 (Adapter-related protein|
           complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3
           complex sigma-3B subunit) (Sigma-3B-adaptin)
          Length = 193

 Score =  112 bits (279), Expect = 1e-24
 Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 6/176 (3%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 286
           MI+ IL+ N  GK RL ++Y    +  + ++  E   LV+ RD    NF+E  +      
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 287 HKVIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 466
           +K+IYR YA L+F  CVD +++EL  L+ I +FVE LD  F NVCELDL+F+  KV+ IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 467 DEFILAGELQETSKKAIIERMGELEKLD*EENVLPACVGR*LKARAKPITSAMPNN 634
            E ++ G + ET+   I+ ++    +L+  E  L A   R + A        +P N
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRN 176

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>AP3S2_MOUSE (Q8BSZ2) AP-3 complex subunit sigma-2 (Adapter-related protein|
           complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3
           complex sigma-3B subunit) (Sigma-3B-adaptin)
          Length = 193

 Score =  112 bits (279), Expect = 1e-24
 Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 6/176 (3%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 286
           MI+ IL+ N  GK RL ++Y    +  + ++  E   LV+ RD    NF+E  +      
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 287 HKVIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 466
           +K+IYR YA L+F  CVD +++EL  L+ I +FVE LD  F NVCELDL+F+  KV+ IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 467 DEFILAGELQETSKKAIIERMGELEKLD*EENVLPACVGR*LKARAKPITSAMPNN 634
            E ++ G + ET+   I+ ++    +L+  E  L A   R + A        +P N
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRN 176

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>AP3S2_HUMAN (P59780) AP-3 complex subunit sigma-2 (Adapter-related protein|
           complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3
           complex sigma-3B subunit) (Sigma-3B-adaptin)
          Length = 193

 Score =  112 bits (279), Expect = 1e-24
 Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 6/176 (3%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 286
           MI+ IL+ N  GK RL ++Y    +  + ++  E   LV+ RD    NF+E  +      
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 287 HKVIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 466
           +K+IYR YA L+F  CVD +++EL  L+ I +FVE LD  F NVCELDL+F+  KV+ IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 467 DEFILAGELQETSKKAIIERMGELEKLD*EENVLPACVGR*LKARAKPITSAMPNN 634
            E ++ G + ET+   I+ ++    +L+  E  L A   R + A        +P N
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRN 176

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>AP3S_SCHPO (Q09905) AP-3 complex subunit sigma (Adapter-related protein|
           complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3
           complex sigma3A subunit) (Sigma-adaptin)
           (Clathrin-associated/assembly/adapter protein, small 3)
          Length = 165

 Score =  103 bits (258), Expect = 3e-22
 Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT----HK 292
           MI  + + N +GK RL K+Y P+++S + K+  +++  V  R P   NF+E       ++
Sbjct: 1   MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60

Query: 293 VIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDE 472
           +IYR+YA L+F   VD  ++EL  L+ I +FVE LD  F+NVCELDLVF F +++ IL E
Sbjct: 61  IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAE 120

Query: 473 FILAGELQETSKKAII 520
            +  G + ET+   I+
Sbjct: 121 VVSGGLVLETNLNEIV 136

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>AP3S_ASHGO (Q75F71) AP-3 complex subunit sigma (Adapter-related protein|
           complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3
           complex sigma3A subunit) (Sigma-adaptin)
           (Clathrin-associated/assembly/adapter protein, small 3)
          Length = 185

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 14/159 (8%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTH----- 289
           MI  +L+ N++ + RL KYY P++  ++  +  +V+ L+  R+    +            
Sbjct: 1   MIHAVLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSS 60

Query: 290 ---------KVIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFN 442
                    ++IY+ YA L+F+  VD  ++EL  L+ I  FVE LD  F+ V ELDL+FN
Sbjct: 61  GSETINEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFN 120

Query: 443 FHKVYLILDEFILAGELQETSKKAIIERMGELEKLD*EE 559
           +  +  +L+E I  G + ET+ K I+E + EL +   +E
Sbjct: 121 WQTLESVLEEIIQGGMVIETNVKKIVETVDELNRTSNQE 159

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>AP3S_YEAST (P47064) AP-3 complex subunit sigma (Adapter-related protein|
           complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3
           complex sigma3A subunit) (Sigma-adaptin)
           (Clathrin-associated/assembly/adapter protein, small 3)
          Length = 194

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 18/158 (11%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNF----------- 271
           MI  +L+ N++ + RL K+Y P++  ++  +  +V+ L+  R+  F +            
Sbjct: 1   MIHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLS 60

Query: 272 -------VEFRTHKVIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELD 430
                  V     ++IY+ YA L+F+  VD  ++EL  L+ I  FVE LD  F+ V ELD
Sbjct: 61  NENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELD 120

Query: 431 LVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEK 544
           L+FN+  +  +L+E +  G + ET+   I+  + EL K
Sbjct: 121 LIFNWQTLESVLEEIVQGGMVIETNVNRIVASVDELNK 158

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>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)|
          Length = 210

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
 Frame = +2

Query: 128 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF-RTHKVIYR 304
           I+ + + +  G+  LAKYY     S K ++ +E +  V N+  +  + + F     ++Y+
Sbjct: 46  IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKN--VFNKTSRTESEIAFFGGMTIVYK 103

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFF-SNVCELDLVFNFHKVYLILDEFIL 481
               LF  +     +NEL+ +  +    E L+H    NV +  L+ N    +L+LDE + 
Sbjct: 104 NSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVD 163

Query: 482 AGELQETSKKAIIERM 529
            G + E+  + +I+++
Sbjct: 164 GGVILESDPQQVIQKV 179

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>COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Zeta-COP)|
          Length = 189

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
 Frame = +2

Query: 104 LPSSSPSMIRFILLQNRQGKTRLAKYYVP----------LEDSEKHKVEYEVHRLVVNRD 253
           + S S   ++ +L+ ++QG+   AKYY P          L +S K + E+E  +L     
Sbjct: 1   MSSLSLYTVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFE-KQLYRKTH 59

Query: 254 PKFTNFVEFRTHKVIYRRYAGLFFSICVDITDNELVYLECIHLFVEILDHFF-SNVCELD 430
            + +  + F  H V+Y+ Y  +   +   + +NE+V  +        LD    S + + +
Sbjct: 60  KQDSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKN 119

Query: 431 LVFNFHKVYLILDEFILAGELQETSKKAIIERMGE 535
           +  N+  V L +DE I  G + ET    I  R+ +
Sbjct: 120 IQENYDMVLLAIDETIDNGVILETDSNTIASRVSK 154

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>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)|
          Length = 205

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 31/136 (22%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
 Frame = +2

Query: 128 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHK-VIYR 304
           I+ + + +  G+  LAKYY     S K ++ +E +  V N+  +  + + F     ++Y+
Sbjct: 41  IKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKN--VFNKTSRTESEIAFLGGMTIVYK 98

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFF-SNVCELDLVFNFHKVYLILDEFIL 481
               +F  +    ++NEL+ +  +    + L H    NV +  L+ N    +L+LDE + 
Sbjct: 99  SSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVD 158

Query: 482 AGELQETSKKAIIERM 529
            G + E+  + +I+++
Sbjct: 159 GGVILESDPQQVIQKV 174

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>AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin coat assembly|
           protein AP50) (Clathrin coat-associated protein AP50)
           (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin
           assembly protein complex 2 medium chain)
          Length = 446

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 31/131 (23%), Positives = 57/131 (43%)
 Frame = +2

Query: 125 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 304
           MI  + + N +G T + K +    D +K   E     ++ N D +    V   +   IY 
Sbjct: 1   MISGLFIFNLKGDTLICKTF--RHDLKKSVTEIFRVAILTNTDYRHP-IVSIGSSTYIYT 57

Query: 305 RYAGLFFSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 484
           ++  L+         N ++ LE +   ++ L H+F  + E  +  N   ++ +LDE I  
Sbjct: 58  KHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDY 117

Query: 485 GELQETSKKAI 517
           G +Q T   A+
Sbjct: 118 GIIQTTEPDAL 128

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>AP2M_DICDI (P54672) AP-2 complex subunit mu (Clathrin coat assembly protein|
           AP50) (Clathrin coat-associated protein AP50) (Plasma
           membrane adaptor AP-2 50 kDa protein) (Clathrin assembly
           protein complex 2 medium chain)
          Length = 439

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +2

Query: 350 NELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETS----KKAI 517
           N  +  E +H  V+I   +F N+ E  +  NF  VY +LDE +  G  Q  S    K  I
Sbjct: 73  NACMVFEVLHQLVDIFKSYFDNLDEDSIRNNFVLVYELLDEILDFGYPQNCSTDVLKLYI 132

Query: 518 IERMGELEKLD 550
            +  G+L+ LD
Sbjct: 133 TQGQGKLKSLD 143

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>COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)|
          Length = 545

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 24/119 (20%), Positives = 52/119 (43%)
 Frame = +2

Query: 143 LQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLF 322
           +  RQGK  L++ +  L      ++      LV       T FVE +  + +YR +   +
Sbjct: 7   ITTRQGKPLLSRQFKDLSKDRVLELLSNFQNLVSEISSDHT-FVEDKHVRYVYRPFDNYY 65

Query: 323 FSICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQE 499
             +  +   N +  L  ++LF + ++ + S+  + ++  N  ++    DE +  G  +E
Sbjct: 66  IILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSMGGYKE 124

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>VE02_VARV (P33862) Protein E2|
          Length = 737

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
 Frame = +2

Query: 128 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 307
           IRF+ + N+   T  +     + D  + K++Y +        P   +F+E RT  +    
Sbjct: 221 IRFLDIVNKNQLTEDSVKNYIINDIRRGKIDYYI--------PYVEDFLEDRTEDLGI-- 270

Query: 308 YAGLFFSICVDITDNELVYLECIHL--FVEILDHFFSNVCELDLVFNFHKVYLILDEFI 478
           YA +FF   +DIT  ++   E  H+  ++     +  ++  + L  N+  +   + +++
Sbjct: 271 YANIFFEDAIDITKLDITKTELEHISKYINYYTTYIDHIVNIILQNNYIDILASIIDYV 329

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>GCDC_ACIFE (Q9ZAA7) Glutaconyl-CoA decarboxylase gamma subunit (EC 4.1.1.70)|
           (Biotin carrier)
          Length = 145

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -1

Query: 251 PC*RPADAPHTQPCASPSPRAGRSTWQAASSPAGSVIV 138
           P   PA AP   P A+P+P A      AA++PAGSV V
Sbjct: 47  PAAAPAPAPAAAPAAAPAPAAK----PAAAAPAGSVTV 80

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>YT15_CAEEL (Q10918) Hypothetical protein B0252.5|
          Length = 301

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
 Frame = +2

Query: 185 VPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSICVDITDNELVY 364
           V  E+ EK K+E +   +++N   +F    + +++ +  R   G   ++C +I +     
Sbjct: 139 VKSEEKEKKKLE-QCLPILLNIRARFAENEKNKSYSIHKRNQNGALKALCDEIVEESTYV 197

Query: 365 LECIHLFVEILDHFFSNVCELD--LVFNFHKVY-LILDEFILAGELQETSKKAI 517
           L   H     L    +N+  L   ++ N  K+  L+ DEF LA    +TS KAI
Sbjct: 198 LNNGHPVSSDLIKKIANINTLSRQVIANETKMENLVQDEFELAASKSKTSDKAI 251

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>YQ51_CAEEL (Q09461) Putative mitochondrial carrier C16C10.1|
          Length = 360

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 534 NLRSWIKKKMCCQRAW 581
           NL  W+KKKMCC+RA+
Sbjct: 149 NLSVWLKKKMCCRRAF 164

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>AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assembly protein|
           AP47) (Clathrin coat-associated protein AP47) (Golgi
           adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit)
           (Clathrin assembly protein assembly protein complex 1
           medium chain) (Uncoor
          Length = 422

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
 Frame = +2

Query: 155 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDP-KFTNFVEFRTHKVIYRRYAGLFFSI 331
           +GKT +++ Y    D +   ++  +H L+   +       + ++    ++ ++  ++   
Sbjct: 12  KGKTIISRNY--RGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHTNIYLVS 69

Query: 332 CVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKK 511
                 N  + L  ++  VE+   +F +V E  +  NF  +Y +LDE +  G  Q T  +
Sbjct: 70  ACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQTTESR 129

Query: 512 AIIE 523
            + E
Sbjct: 130 ILQE 133

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>VE02_VACCV (P21604) Protein E2|
          Length = 737

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
 Frame = +2

Query: 128 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 307
           IRF+ + N+   T  +     + D  + K++Y +        P   +F+E RT  +    
Sbjct: 221 IRFLDIVNKNQLTEDSVKNYIINDIRRGKIDYYI--------PYVEDFLEDRTEDLGI-- 270

Query: 308 YAGLFFSICVDITDNELVYLECIHL------FVEILDHFFSNVCE 424
           YA +FF   +DIT  ++   E  H+      +   +DH  + + +
Sbjct: 271 YANIFFEDAIDITKLDITKTELEHISKYMNYYTTYIDHIVNIILQ 315

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>VE02_VACCC (P21080) Protein E2|
          Length = 737

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
 Frame = +2

Query: 128 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 307
           IRF+ + N+   T  +     + D  + K++Y +        P   +F+E RT  +    
Sbjct: 221 IRFLDIVNKNQLTEDSVKNYIINDIRRGKIDYYI--------PYVEDFLEDRTEDLGI-- 270

Query: 308 YAGLFFSICVDITDNELVYLECIHL------FVEILDHFFSNVCE 424
           YA +FF   +DIT  ++   E  H+      +   +DH  + + +
Sbjct: 271 YANIFFEDAIDITKLDITKTELEHISKYMNYYTTYIDHIVNIILQ 315

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>LRC8A_RAT (Q4V8I7) Leucine-rich repeat-containing protein 8A|
          Length = 810

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 556 FLIQLLKFTHSLYNRLFACFLQLSSENKLIQYQVN 452
           F++ L+     LY++ FA FL   SENKL Q  +N
Sbjct: 374 FMLHLIDQYDPLYSKRFAVFLSEVSENKLRQLNLN 408

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>LRC8A_MOUSE (Q80WG5) Leucine-rich repeat-containing protein 8A|
          Length = 810

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 556 FLIQLLKFTHSLYNRLFACFLQLSSENKLIQYQVN 452
           F++ L+     LY++ FA FL   SENKL Q  +N
Sbjct: 374 FMLHLIDQYDPLYSKRFAVFLSEVSENKLRQLNLN 408

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>LRC8A_HUMAN (Q8IWT6) Leucine-rich repeat-containing protein 8A|
          Length = 810

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 556 FLIQLLKFTHSLYNRLFACFLQLSSENKLIQYQVN 452
           F++ L+     LY++ FA FL   SENKL Q  +N
Sbjct: 374 FMLHLIDQYDPLYSKRFAVFLSEVSENKLRQLNLN 408

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>AMO_PEA (Q43077) Amine oxidase [copper-containing] precursor (EC 1.4.3.6)|
          Length = 674

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +2

Query: 140 LLQNRQ--GKTRLAKYYVPLEDSEK-HKVEYEVHRLVVNRDPKF--TNFVEFRTHKVI 298
           ++QN+      RLA +Y+ L+D EK H + YE H  +V+   K      +  +TH+++
Sbjct: 49  IVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEIL 106

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>THI1_SCHPO (P36598) Thiamine repressible genes regulatory protein thi1|
           (Transcription factor ntf1)
          Length = 775

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 297 ITLCVRNSTKLVNLGSLLTTSRCTS 223
           I LCV ++T+++N+  LL T +C S
Sbjct: 548 IQLCVESATRVINIAHLLLTHKCLS 572

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>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin|
           assembly protein complex 1 medium chain) (Clathrin coat
           assembly protein AP54) (Clathrin coat-associated protein
           AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa
           subunit)
          Length = 475

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 326 SICVDITDNELVYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETS 505
           +I   ++ N       +H  VE+L  +   V E  +  NF  +Y +LDE +  G  Q T 
Sbjct: 69  AIVTSLSANAAAIFTFLHKLVEVLSDYLKTVEEESIRDNFVIIYELLDEVMDYGIPQITE 128

Query: 506 KKAI 517
            K +
Sbjct: 129 TKML 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,727,905
Number of Sequences: 219361
Number of extensions: 2100194
Number of successful extensions: 6272
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 6060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6254
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result