ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9c08 |
|---|---|
| Clone Library Name | barley_pub |
>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)| (Protein GYMNOS) Length = 1384 Score = 73.2 bits (178), Expect(3) = 2e-26 Identities = 30/61 (49%), Positives = 44/61 (72%) Frame = +2 Query: 164 LFPNYLLYEFTGLSGGRIWKGEHDLLLLKALIKHGYARWQYISDDRDNGLFETARRELNL 343 +FP+ +L F GL G+IWK EHD ++++A++KHGY RWQ I DD++ G+ E +ELN Sbjct: 1051 VFPSRILERFPGLRSGKIWKEEHDKIMIRAVLKHGYGRWQAIVDDKELGIQELICKELNF 1110 Query: 344 P 346 P Sbjct: 1111 P 1111 Score = 43.9 bits (102), Expect(3) = 2e-26 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = +3 Query: 396 NLESTQEVQVNPTSLSQYRDIQRKIVEFIRKRYHILEKCLDIEYA 530 N S QVN S+ YRD+QR++VEF++KR +LEK ++ EYA Sbjct: 1150 NNASADGAQVN--SMFYYRDMQRRLVEFVKKRVLLLEKAMNYEYA 1192 Score = 41.6 bits (96), Expect(3) = 2e-26 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = +1 Query: 37 DSPTYADGVPKE-MRADETLIRLAKISLVEEKVAAMEQGKNFETLPQLLV 183 +SPT++DGVPKE +R ++ L+R+A + LV+EKV +E P ++ Sbjct: 1008 NSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRIL 1057
>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)| (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta) Length = 1912 Score = 39.3 bits (90), Expect = 0.009 Identities = 16/28 (57%), Positives = 18/28 (64%) Frame = +2 Query: 215 IWKGEHDLLLLKALIKHGYARWQYISDD 298 IW HD LL +I HGYARWQ I +D Sbjct: 1728 IWHRRHDYWLLAGIINHGYARWQDIQND 1755 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +1 Query: 46 TYADGVPKE-MRADETLIRLAKISLVEEKVAAMEQGKNFETLPQLLVV 186 T+ADGVP+E + L R+ +SL+ +KV E ++P+L V Sbjct: 1477 TFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEV 1524
>CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 (CHD-4)| Length = 1915 Score = 39.3 bits (90), Expect = 0.009 Identities = 16/28 (57%), Positives = 18/28 (64%) Frame = +2 Query: 215 IWKGEHDLLLLKALIKHGYARWQYISDD 298 IW HD LL +I HGYARWQ I +D Sbjct: 1731 IWHRRHDYWLLAGIINHGYARWQDIQND 1758 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +1 Query: 46 TYADGVPKE-MRADETLIRLAKISLVEEKVAAMEQGKNFETLPQLLVV 186 T+ADGVP+E + L R+ +SL+ +KV E ++P+L V Sbjct: 1470 TFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEV 1517
>CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 (EC 3.6.1.-)| (ATP-dependent helicase CHD5) (CHD-5) Length = 1954 Score = 38.9 bits (89), Expect = 0.012 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = +2 Query: 188 EFTGLSGGRI---WKGEHDLLLLKALIKHGYARWQYISDD 298 E +S G+I W HD LL ++ HGYARWQ I +D Sbjct: 1723 ERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQND 1762 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +1 Query: 46 TYADGVPKE-MRADETLIRLAKISLVEEKVAAMEQGKNFETLPQLL 180 T+ADGVP+E + L R+ +SLV +KV E + P L+ Sbjct: 1485 TFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLI 1530
>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)| (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen 240 kDa protein) (Mi2-alpha) (Zinc-finger helicase) (hZFH) Length = 2000 Score = 38.9 bits (89), Expect = 0.012 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = +2 Query: 188 EFTGLSGGR---IWKGEHDLLLLKALIKHGYARWQYISDD 298 E +S G+ IW HD LL ++ HGYARWQ I +D Sbjct: 1727 ERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQND 1766 Score = 34.7 bits (78), Expect = 0.22 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = +1 Query: 40 SPTYADGVPKE-MRADETLIRLAKISLVEEKVAAMEQGKNFETLPQLL 180 S T+ADGVP+E + + L R+ +SLV++KV E ++P+L+ Sbjct: 1471 SETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELM 1518
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC| 3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2) Length = 1982 Score = 37.0 bits (84), Expect = 0.044 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 Query: 215 IWKGEHDLLLLKALIKHGYARWQYISDD 298 IW HD LL ++ HGY RWQ I +D Sbjct: 1758 IWHRRHDYWLLAGIVTHGYGRWQDIQND 1785 Score = 35.8 bits (81), Expect = 0.099 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = +1 Query: 34 NDSPTYADGVPKE-MRADETLIRLAKISLVEEKVAAMEQGKNFETLPQLLV 183 +++ T+ADGVP+E + L R+ +SL+ +KV E + ++P+L++ Sbjct: 1468 DNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELIL 1518
>HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 (EC 3.6.1.-) (ATP-dependent| helicase hrp1) Length = 1373 Score = 33.1 bits (74), Expect = 0.64 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +2 Query: 218 WKGEHDLLLLKALIKHGYARWQYISDDRDNGLFE 319 W + D +LL + KHG+ WQ I +D D GL + Sbjct: 1132 WGIKEDSMLLAGINKHGFGCWQAIKNDPDLGLHD 1165
>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)| Length = 674 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -1 Query: 474 QQSFSGCPCIGIGLLGSPALPVCFPDFHLPHCLT 373 Q SF PC G GSPA C ++HL LT Sbjct: 139 QYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLT 172
>HSP7F_CANGA (Q6FJI3) Heat shock protein homolog SSE1| Length = 694 Score = 31.2 bits (69), Expect = 2.4 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +3 Query: 495 HILEKCLDIEYAVIKTKTPVPDDLTEQNVP 584 HI+E+ +E V+K + P+P+D E VP Sbjct: 490 HIIEEAYSLEDIVVKEEVPLPEDAPEDAVP 519
>NDC1_PONPY (Q5RBY5) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 674 Score = 31.2 bits (69), Expect = 2.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -1 Query: 474 QQSFSGCPCIGIGLLGSPALPVCFPDFHL 388 Q SF PC G GSPA C ++HL Sbjct: 139 QYSFLVVPCTGANSFGSPAAQTCLNEYHL 167
>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640| Length = 1069 Score = 30.8 bits (68), Expect = 3.2 Identities = 23/88 (26%), Positives = 34/88 (38%) Frame = -1 Query: 450 CIGIGLLGSPALPVCFPDFHLPHCLTEKPINSLAEGRLSSRRAVSNSPLSLSSDMYCHLA 271 C + G LP F L K + +GR+ R N SLS+ + L Sbjct: 873 CATVTSSGQLILPEALKLFPLYTLALTKSVGLRTDGRIDDRSFWINYVSSLSTPLAIPLV 932 Query: 270 YPCFINAFSNSRSCSPFHILPPDKPVNS 187 YP I+ + +LPP P++S Sbjct: 933 YPRMISVHDLDVKDTEGSVLPPPIPLSS 960
>RS6_PELCD (Q3A317) 30S ribosomal protein S6| Length = 115 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Frame = +1 Query: 43 PTYADGVPKEMRADETLIRLAKISL----VEEKVAAMEQGKNFE 162 PT D + +R DE +I+ + L VEE AA E+G N E Sbjct: 69 PTIIDEYERRLRLDEAVIKFQTVLLEKGFVEEAAAAAEEGANAE 112
>Y129_TREPA (O83166) Hypothetical protein TP0129| Length = 158 Score = 29.6 bits (65), Expect = 7.1 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -1 Query: 519 CPSIFLEYGISF**TQQSFSGC--PCIGIGLLGSPALPVCFPDFHLPHCLTEKPINSLAE 346 C + + E G+ QQ F C G+ LLG +C P HLP CL P +++ Sbjct: 99 CSTSYQEQGLQ----QQLFCSYRRTCCGLLLLGRRPCCLCPPSAHLP-CLMAPPSDAMPP 153 Query: 345 GRLSS 331 RL S Sbjct: 154 TRLRS 158
>MDE3_SCHPO (O43077) Sporulation protein kinase mde3 (EC 2.7.11.1)| (Mei4-dependent protein 3) Length = 559 Score = 29.6 bits (65), Expect = 7.1 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = -1 Query: 405 FPDFH--LPHCLTEKPINSL-AEGRLSSRRAVSNSP 307 FPD H PH TEKPIN+ + G L++ A SN P Sbjct: 381 FPDSHGSQPHVKTEKPINAKESTGHLANPIASSNVP 416
>APOA_HUMAN (P08519) Apolipoprotein(a) precursor (EC 3.4.21.-) (Apo(a)) (Lp(a))| Length = 4548 Score = 29.6 bits (65), Expect = 7.1 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = +3 Query: 480 IRKRYHILEKCLDIEYAVIKTKTPVPDDLTE---QNVPMGHSPAV 605 +R Y L +CL E +V+ T T VPD TE + P SP V Sbjct: 3629 VRWEYCNLTQCLVTESSVLATLTVVPDPSTEASSEEAPTEQSPGV 3673
>YQAK_BACSU (P45908) Hypothetical protein yqaK| Length = 284 Score = 29.3 bits (64), Expect = 9.3 Identities = 16/78 (20%), Positives = 33/78 (42%) Frame = +2 Query: 125 RRWLPWSKXKISKLFPNYLLYEFTGLSGGRIWKGEHDLLLLKALIKHGYARWQYISDDRD 304 R+ + W+K ++ K + +F WK + D + LK ++K ++W +S + Sbjct: 171 RKTVYWTKAQVEKHKKKFSKSDFG-------WKNDWDAMALKTVLKAVLSKWGILSVEMQ 223 Query: 305 NGLFETARRELNLPSANE 358 + E + NE Sbjct: 224 KAVIEEDETRERIDITNE 241
>CK5P2_MOUSE (Q8K389) CDK5 regulatory subunit-associated protein 2 (CDK5| activator-binding protein C48) Length = 1822 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = +3 Query: 369 SQSNNEANGNLESTQEVQVNPTSLSQYRDIQRKIVEF------IRKRYHILEKCLDIEYA 530 S ++ NG L S E +V+PT +D + +I E ++ R + LE+ + E+A Sbjct: 33 SDTSGLGNGVLPSMSEEKVSPTRARNMKDFENQITELKKENFNLKLRIYFLEERIQQEFA 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,569,090 Number of Sequences: 219361 Number of extensions: 1919812 Number of successful extensions: 5171 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5169 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
