ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY062186.1| Oryza sativa chromatin-remodeling factor CHD3 (PK... 412 e-112
2dbj|AK065390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 412 e-112
3gb|AY062187.1|AY062187S1 Oryza sativa (indica cultivar-group) ch... 109 1e-20
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
5dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
7gb|AC145945.2| Gallus gallus chromosome UNK clone CH261-23M4, co... 42 2.1
8gb|AC129926.4| Homo sapiens chromosome 17, clone RP11-663N22, co... 42 2.1
9emb|CR378667.1| Photobacterium profundum SS9; segment 5/12 42 2.1
10gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 42 2.1
11gb|AC087297.13| Homo sapiens chromosome 17, clone RP11-362P24, c... 42 2.1
12gb|AC091189.4| Homo sapiens chromosome 8, clone RP11-606D13, com... 42 2.1
13gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, com... 42 2.1
14gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, compl... 42 2.1
15gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete... 42 2.1
16emb|AL049873.3|CNS0000T Human chromosome 14 DNA sequence BAC R-1... 42 2.1
17gb|AC106785.3| Homo sapiens chromosome 16 clone RP11-352B15, com... 42 2.1
18dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 2.1
19gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complet... 40 8.2
20ref|XM_519928.1| PREDICTED: Pan troglodytes similar to mitochond... 40 8.2
21gb|AE001389.2| Plasmodium falciparum 3D7 chromosome 2 section 26... 40 8.2
22gb|BC009190.2| Homo sapiens mitochondrial ribosomal protein L13,... 40 8.2
23ref|NM_014078.4| Homo sapiens mitochondrial ribosomal protein L1... 40 8.2
24gb|AC130826.4| Mus musculus BAC clone RP23-400F13 from chromosom... 40 8.2
25emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on ch... 40 8.2
26emb|AL357673.12| Human DNA sequence from clone RP11-446E24 on ch... 40 8.2
27emb|Z67757.1|SPAC24B11 S.pombe chromosome I cosmid c24B11 40 8.2
28emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome;... 40 8.2
29gb|BC021744.2| Homo sapiens mitochondrial ribosomal protein L13,... 40 8.2
30gb|AC026671.18| Homo sapiens 3 BAC RP11-91M9 (Roswell Park Cance... 40 8.2
31gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, compl... 40 8.2
32gb|AC078785.22| Homo sapiens 3 BAC RP11-572M11 (Roswell Park Can... 40 8.2
33dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 8.2
34gb|AC096947.2| Homo sapiens chromosome 1 clone RP4-802A10, compl... 40 8.2
35gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, com... 40 8.2
36gb|AC008674.5| Homo sapiens chromosome 5 clone CTB-43E15, comple... 40 8.2
37gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, compl... 40 8.2
38gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, comple... 40 8.2
39gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome ... 40 8.2
40emb|BX322797.11| Zebrafish DNA sequence from clone CH211-214H9 i... 40 8.2
41gb|AC158985.2| Mus musculus BAC clone RP23-277H13 from chromosom... 40 8.2
42gb|AF112214.1|AF112214 Homo sapiens ribosomal protein L13 mRNA, ... 40 8.2
43dbj|AP000684.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 8.2
44gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 8.2
45dbj|AP005364.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.2
46emb|CR388150.14| Zebrafish DNA sequence from clone DKEY-115A2 in... 40 8.2
47gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosom... 40 8.2
48gb|AC005273.1|AC005273 Homo sapiens chromosome 17, clone hRPK.87... 40 8.2
49gb|AC135635.5| Mus musculus BAC clone RP23-245M20 from 3, comple... 40 8.2
50dbj|AB049640.1| Homo sapiens MRPL13 mRNA for mitochondrial ribos... 40 8.2 
>gb|AY062186.1| Oryza sativa chromatin-remodeling factor CHD3 (PKL) mRNA, complete
            cds
          Length = 4443

 Score =  412 bits (208), Expect = e-112
 Identities = 456/536 (85%), Gaps = 2/536 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   tatgcagatggtgtgccgaaggaaatgcgtgctgatgagacattgatcagactagccaaa 108
            ||||||||||| ||||| |||||||||||  | |||||||||||| |||| |||||||| 
Sbjct: 3076 tatgcagatggcgtgccaaaggaaatgcgcacagatgagacattggtcaggctagccaac 3135

                                                                        
Query: 109  atatcacttgtggaagagaaggtggctgccatggagcaaggnaaaaatttcgaaactctt 168
            ||||||||||||||||||||||||||||||||||| ||||| ||||||  | ||||||||
Sbjct: 3136 atatcacttgtggaagagaaggtggctgccatggaacaagg-aaaaataacaaaactctt 3194

                                                                        
Query: 169  ccccaactacttgttgtatgaatttactggcttatcaggtggaagaatatggaaagggga 228
             |||| ||| ||||| ||||||||| || |||||   ||||||||| ||||||||| |||
Sbjct: 3195 tcccagctatttgttatatgaatttcctagcttagttggtggaagagtatggaaagcgga 3254

                                                                        
Query: 229  gcatgatctactgttactgaaagcattaataaagcacgggtatgccaggtggcaatacat 288
             || ||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 3255 acaggatctactgttgctgaaagcattaataaagcatgggtatgcaaggtggcaatatat 3314

                                                                        
Query: 289  atcagatgacagagataacgggctatttgaaactgctcgacgagagcttaatcttccttc 348
            |||||||||||||||||| ||| | |||||  |||| |||| |||||| |  |||||| |
Sbjct: 3315 atcagatgacagagataatgggatttttgaggctgcacgacaagagctgaggcttcctac 3374

                                                                        
Query: 349  tgctaatgaattgattggcttctcagtcaaacaatgaggcaaatggaaatctggaaagca 408
            |||||||||| ||||| | |||||| |||||||||||| |||| ||||||||||||||||
Sbjct: 3375 tgctaatgaactgattag-ttctcactcaaacaatgagacaaacggaaatctggaaagca 3433

                                                                        
Query: 409  cacaggaagtgcaggtgaacccaacaagcctatcccaatacagggacatccagagaaaga 468
            |||| ||||  |||  ||||||||| ||| |   ||| |||||||| |  ||||||||||
Sbjct: 3434 cacaagaaggccagtcgaacccaacgagcatgatccattacagggatacacagagaaaga 3493

                                                                        
Query: 469  ttgttgagtttatcagaaagagataccatattctagaaaaatgcttggacattgaatatg 528
            | ||||||||||| ||||||||||||||| || | || | ||| ||| |  ||||||| |
Sbjct: 3494 tagttgagtttattagaaagagataccatcttttggagagatgtttgaatcttgaatacg 3553

                                                                    
Query: 529  ctgtgataaaaacgaaaactcctgttcctgatgatcttactgaacaaaatgttcct 584
            ||||||| ||||| ||||| |||||||||||||||||  |||||||| || |||||
Sbjct: 3554 ctgtgattaaaacaaaaacccctgttcctgatgatctcgctgaacaagattttcct 3609
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>dbj|AK065390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023A02, full
           insert sequence
          Length = 1605

 Score =  412 bits (208), Expect = e-112
 Identities = 456/536 (85%), Gaps = 2/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 49  tatgcagatggtgtgccgaaggaaatgcgtgctgatgagacattgatcagactagccaaa 108
           ||||||||||| ||||| |||||||||||  | |||||||||||| |||| |||||||| 
Sbjct: 320 tatgcagatggcgtgccaaaggaaatgcgcacagatgagacattggtcaggctagccaac 379

                                                                       
Query: 109 atatcacttgtggaagagaaggtggctgccatggagcaaggnaaaaatttcgaaactctt 168
           ||||||||||||||||||||||||||||||||||| ||||| ||||||  | ||||||||
Sbjct: 380 atatcacttgtggaagagaaggtggctgccatggaacaagg-aaaaataacaaaactctt 438

                                                                       
Query: 169 ccccaactacttgttgtatgaatttactggcttatcaggtggaagaatatggaaagggga 228
            |||| ||| ||||| ||||||||| || |||||   ||||||||| ||||||||| |||
Sbjct: 439 tcccagctatttgttatatgaatttcctagcttagttggtggaagagtatggaaagcgga 498

                                                                       
Query: 229 gcatgatctactgttactgaaagcattaataaagcacgggtatgccaggtggcaatacat 288
            || ||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 499 acaggatctactgttgctgaaagcattaataaagcatgggtatgcaaggtggcaatatat 558

                                                                       
Query: 289 atcagatgacagagataacgggctatttgaaactgctcgacgagagcttaatcttccttc 348
           |||||||||||||||||| ||| | |||||  |||| |||| |||||| |  |||||| |
Sbjct: 559 atcagatgacagagataatgggatttttgaggctgcacgacaagagctgaggcttcctac 618

                                                                       
Query: 349 tgctaatgaattgattggcttctcagtcaaacaatgaggcaaatggaaatctggaaagca 408
           |||||||||| ||||| | |||||| |||||||||||| |||| ||||||||||||||||
Sbjct: 619 tgctaatgaactgattag-ttctcactcaaacaatgagacaaacggaaatctggaaagca 677

                                                                       
Query: 409 cacaggaagtgcaggtgaacccaacaagcctatcccaatacagggacatccagagaaaga 468
           |||| ||||  |||  ||||||||| ||| |   ||| |||||||| |  ||||||||||
Sbjct: 678 cacaagaaggccagtcgaacccaacgagcatgatccattacagggatacacagagaaaga 737

                                                                       
Query: 469 ttgttgagtttatcagaaagagataccatattctagaaaaatgcttggacattgaatatg 528
           | ||||||||||| ||||||||||||||| || | || | ||| ||| |  ||||||| |
Sbjct: 738 tagttgagtttattagaaagagataccatcttttggagagatgtttgaatcttgaatacg 797

                                                                   
Query: 529 ctgtgataaaaacgaaaactcctgttcctgatgatcttactgaacaaaatgttcct 584
           ||||||| ||||| ||||| |||||||||||||||||  |||||||| || |||||
Sbjct: 798 ctgtgattaaaacaaaaacccctgttcctgatgatctcgctgaacaagattttcct 853
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>gb|AY062187.1|AY062187S1 Oryza sativa (indica cultivar-group) chromatin-remodeling factor CHD3
             (PKL) gene, exons 1 through 26
          Length = 13785

 Score =  109 bits (55), Expect = 1e-20
 Identities = 116/135 (85%), Gaps = 1/135 (0%)
 Strand = Plus / Plus

                                                                         
Query: 128   aggtggctgccatggagcaaggnaaaaatttcgaaactcttccccaactacttgttgtat 187
             |||||||||||||||| ||||| ||||||  | |||||||| |||| ||| ||||| |||
Sbjct: 13652 aggtggctgccatggaacaagg-aaaaataacaaaactctttcccagctatttgttatat 13710

                                                                         
Query: 188   gaatttactggcttatcaggtggaagaatatggaaaggggagcatgatctactgttactg 247
             |||||| || |||||   ||||||||| ||||||||| ||| || ||||||||||| |||
Sbjct: 13711 gaatttcctagcttagttggtggaagagtatggaaagcggaacaggatctactgttgctg 13770

                            
Query: 248   aaagcattaataaag 262
             |||||||||||||||
Sbjct: 13771 aaagcattaataaag 13785



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                         
Query: 54    agatggtgtgccgaaggaaatgcgtgctgatgagacattgatcagactagccaaaatatc 113
             |||||| ||||| |||||||||||  | |||||||||||| |||| |||||||| |||||
Sbjct: 13487 agatggcgtgccaaaggaaatgcgcacagatgagacattggtcaggctagccaacatatc 13546

                               
Query: 114   acttgtggaagagaaggt 131
             ||||||||||||||||||
Sbjct: 13547 acttgtggaagagaaggt 13564
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 1e-20
 Identities = 116/135 (85%), Gaps = 1/135 (0%)
 Strand = Plus / Minus

                                                                           
Query: 128     aggtggctgccatggagcaaggnaaaaatttcgaaactcttccccaactacttgttgtat 187
               |||||||||||||||| ||||| ||||||  | |||||||| |||| ||| ||||| |||
Sbjct: 4182438 aggtggctgccatggaacaagg-aaaaataacaaaactctttcccagctatttgttatat 4182380

                                                                           
Query: 188     gaatttactggcttatcaggtggaagaatatggaaaggggagcatgatctactgttactg 247
               |||||| || |||||   ||||||||| ||||||||| ||| || ||||||||||| |||
Sbjct: 4182379 gaatttcctagcttagttggtggaagagtatggaaagcggaacaggatctactgttgctg 4182320

                              
Query: 248     aaagcattaataaag 262
               |||||||||||||||
Sbjct: 4182319 aaagcattaataaag 4182305



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 108/126 (85%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                           
Query: 266     gggtatgccaggtggcaatacatatcagatgacagagataacgggctatttgaaactgct 325
               |||||||| ||||||||||| |||||||||||||||||||| ||| | |||||  |||| 
Sbjct: 4180955 gggtatgcaaggtggcaatatatatcagatgacagagataatgggatttttgaggctgca 4180896

                                                                           
Query: 326     cgacgagagcttaatcttccttctgctaatgaattgattggcttctcagtcaaacaatga 385
               |||| |||||| |  |||||| ||||||||||| ||||| | |||||| |||||||||||
Sbjct: 4180895 cgacaagagctgaggcttcctactgctaatgaactgattag-ttctcactcaaacaatga 4180837

                     
Query: 386     ggcaaa 391
               | ||||
Sbjct: 4180836 gacaaa 4180831



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                           
Query: 54      agatggtgtgccgaaggaaatgcgtgctgatgagacattgatcagactagccaaaatatc 113
               |||||| ||||| |||||||||||  | |||||||||||| |||| |||||||| |||||
Sbjct: 4182603 agatggcgtgccaaaggaaatgcgcacagatgagacattggtcaggctagccaacatatc 4182544

                                 
Query: 114     acttgtggaagagaaggt 131
               ||||||||||||||||||
Sbjct: 4182543 acttgtggaagagaaggt 4182526



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                           
Query: 393     ggaaatctggaaagcacacaggaagtgcaggtgaacccaacaagcctatcccaatacagg 452
               |||||||||||||||||||| ||||  |||  ||||||||| ||| |   ||| ||||||
Sbjct: 4180732 ggaaatctggaaagcacacaagaaggccagtcgaacccaacgagcatgatccattacagg 4180673

                                                            
Query: 453     gacatccagagaaagattgttgagtttatcagaaagagataccat 497
               || |  ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 4180672 gatacacagagaaagatagttgagtttattagaaagagataccat 4180628



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                               
Query: 537     aaaacgaaaactcctgttcctgatgatcttactgaacaaaatgttcct 584
               ||||| ||||| |||||||||||||||||  |||||||| || |||||
Sbjct: 4180478 aaaacaaaaacccctgttcctgatgatctcgctgaacaagattttcct 4180431
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>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0554A06
          Length = 165311

 Score =  109 bits (55), Expect = 1e-20
 Identities = 116/135 (85%), Gaps = 1/135 (0%)
 Strand = Plus / Minus

                                                                         
Query: 128   aggtggctgccatggagcaaggnaaaaatttcgaaactcttccccaactacttgttgtat 187
             |||||||||||||||| ||||| ||||||  | |||||||| |||| ||| ||||| |||
Sbjct: 27659 aggtggctgccatggaacaagg-aaaaataacaaaactctttcccagctatttgttatat 27601

                                                                         
Query: 188   gaatttactggcttatcaggtggaagaatatggaaaggggagcatgatctactgttactg 247
             |||||| || |||||   ||||||||| ||||||||| ||| || ||||||||||| |||
Sbjct: 27600 gaatttcctagcttagttggtggaagagtatggaaagcggaacaggatctactgttgctg 27541

                            
Query: 248   aaagcattaataaag 262
             |||||||||||||||
Sbjct: 27540 aaagcattaataaag 27526



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 108/126 (85%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                         
Query: 266   gggtatgccaggtggcaatacatatcagatgacagagataacgggctatttgaaactgct 325
             |||||||| ||||||||||| |||||||||||||||||||| ||| | |||||  |||| 
Sbjct: 26176 gggtatgcaaggtggcaatatatatcagatgacagagataatgggatttttgaggctgca 26117

                                                                         
Query: 326   cgacgagagcttaatcttccttctgctaatgaattgattggcttctcagtcaaacaatga 385
             |||| |||||| |  |||||| ||||||||||| ||||| | |||||| |||||||||||
Sbjct: 26116 cgacaagagctgaggcttcctactgctaatgaactgattag-ttctcactcaaacaatga 26058

                   
Query: 386   ggcaaa 391
             | ||||
Sbjct: 26057 gacaaa 26052



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                         
Query: 54    agatggtgtgccgaaggaaatgcgtgctgatgagacattgatcagactagccaaaatatc 113
             |||||| ||||| |||||||||||  | |||||||||||| |||| |||||||| |||||
Sbjct: 27824 agatggcgtgccaaaggaaatgcgcacagatgagacattggtcaggctagccaacatatc 27765

                               
Query: 114   acttgtggaagagaaggt 131
             ||||||||||||||||||
Sbjct: 27764 acttgtggaagagaaggt 27747



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                         
Query: 393   ggaaatctggaaagcacacaggaagtgcaggtgaacccaacaagcctatcccaatacagg 452
             |||||||||||||||||||| ||||  |||  ||||||||| ||| |   ||| ||||||
Sbjct: 25953 ggaaatctggaaagcacacaagaaggccagtcgaacccaacgagcatgatccattacagg 25894

                                                          
Query: 453   gacatccagagaaagattgttgagtttatcagaaagagataccat 497
             || |  ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 25893 gatacacagagaaagatagttgagtttattagaaagagataccat 25849



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 537   aaaacgaaaactcctgttcctgatgatcttactgaacaaaatgttcct 584
             ||||| ||||| |||||||||||||||||  |||||||| || |||||
Sbjct: 25699 aaaacaaaaacccctgttcctgatgatctcgctgaacaagattttcct 25652
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>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0036B04
          Length = 136159

 Score =  109 bits (55), Expect = 1e-20
 Identities = 116/135 (85%), Gaps = 1/135 (0%)
 Strand = Plus / Minus

                                                                          
Query: 128    aggtggctgccatggagcaaggnaaaaatttcgaaactcttccccaactacttgttgtat 187
              |||||||||||||||| ||||| ||||||  | |||||||| |||| ||| ||||| |||
Sbjct: 115697 aggtggctgccatggaacaagg-aaaaataacaaaactctttcccagctatttgttatat 115639

                                                                          
Query: 188    gaatttactggcttatcaggtggaagaatatggaaaggggagcatgatctactgttactg 247
              |||||| || |||||   ||||||||| ||||||||| ||| || ||||||||||| |||
Sbjct: 115638 gaatttcctagcttagttggtggaagagtatggaaagcggaacaggatctactgttgctg 115579

                             
Query: 248    aaagcattaataaag 262
              |||||||||||||||
Sbjct: 115578 aaagcattaataaag 115564



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 108/126 (85%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                          
Query: 266    gggtatgccaggtggcaatacatatcagatgacagagataacgggctatttgaaactgct 325
              |||||||| ||||||||||| |||||||||||||||||||| ||| | |||||  |||| 
Sbjct: 114214 gggtatgcaaggtggcaatatatatcagatgacagagataatgggatttttgaggctgca 114155

                                                                          
Query: 326    cgacgagagcttaatcttccttctgctaatgaattgattggcttctcagtcaaacaatga 385
              |||| |||||| |  |||||| ||||||||||| ||||| | |||||| |||||||||||
Sbjct: 114154 cgacaagagctgaggcttcctactgctaatgaactgattag-ttctcactcaaacaatga 114096

                    
Query: 386    ggcaaa 391
              | ||||
Sbjct: 114095 gacaaa 114090



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                          
Query: 54     agatggtgtgccgaaggaaatgcgtgctgatgagacattgatcagactagccaaaatatc 113
              |||||| ||||| |||||||||||  | |||||||||||| |||| |||||||| |||||
Sbjct: 115862 agatggcgtgccaaaggaaatgcgcacagatgagacattggtcaggctagccaacatatc 115803

                                
Query: 114    acttgtggaagagaaggt 131
              ||||||||||||||||||
Sbjct: 115802 acttgtggaagagaaggt 115785



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                          
Query: 393    ggaaatctggaaagcacacaggaagtgcaggtgaacccaacaagcctatcccaatacagg 452
              |||||||||||||||||||| ||||  |||  ||||||||| ||| |   ||| ||||||
Sbjct: 113991 ggaaatctggaaagcacacaagaaggccagtcgaacccaacgagcatgatccattacagg 113932

                                                           
Query: 453    gacatccagagaaagattgttgagtttatcagaaagagataccat 497
              || |  ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 113931 gatacacagagaaagatagttgagtttattagaaagagataccat 113887



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 537    aaaacgaaaactcctgttcctgatgatcttactgaacaaaatgttcct 584
              ||||| ||||| |||||||||||||||||  |||||||| || |||||
Sbjct: 113737 aaaacaaaaacccctgttcctgatgatctcgctgaacaagattttcct 113690
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>gb|AC145945.2| Gallus gallus chromosome UNK clone CH261-23M4, complete sequence
          Length = 199148

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 96    cagactagccaaaatatcacttgtg 120
             |||||||| ||||||||||||||||
Sbjct: 49274 cagactagacaaaatatcacttgtg 49250
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>gb|AC129926.4| Homo sapiens chromosome 17, clone RP11-663N22, complete sequence
          Length = 208551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 522   gaatatgctgtgataaaaacgaaaa 546
             |||||| ||||||||||||||||||
Sbjct: 69220 gaatattctgtgataaaaacgaaaa 69196



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 520   ttgaatatgctgtgataaaaacga 543
             |||||||| |||||||||||||||
Sbjct: 95202 ttgaatatcctgtgataaaaacga 95179
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>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12
          Length = 349080

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 564   cttactgaacaaaatgttcctatgg 588
             |||||||||||||||| ||||||||
Sbjct: 68900 cttactgaacaaaatgatcctatgg 68924
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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 419   gcaggtgaacccaacaagcct 439
             |||||||||||||||||||||
Sbjct: 92394 gcaggtgaacccaacaagcct 92414
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>gb|AC087297.13| Homo sapiens chromosome 17, clone RP11-362P24, complete sequence
          Length = 179026

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 522   gaatatgctgtgataaaaacgaaaa 546
             |||||| ||||||||||||||||||
Sbjct: 54329 gaatattctgtgataaaaacgaaaa 54305



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 520   ttgaatatgctgtgataaaaacga 543
             |||||||| |||||||||||||||
Sbjct: 80312 ttgaatatcctgtgataaaaacga 80289
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>gb|AC091189.4| Homo sapiens chromosome 8, clone RP11-606D13, complete sequence
          Length = 174458

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 521   tgaatatgctgtgataaaaac 541
             |||||||||||||||||||||
Sbjct: 74969 tgaatatgctgtgataaaaac 74989
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>gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, complete sequence
          Length = 107318

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 521   tgaatatgctgtgataaaaac 541
             |||||||||||||||||||||
Sbjct: 80722 tgaatatgctgtgataaaaac 80742
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>gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, complete sequence
          Length = 173692

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 521    tgaatatgctgtgataaaaac 541
              |||||||||||||||||||||
Sbjct: 167979 tgaatatgctgtgataaaaac 167999
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>gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete sequence
          Length = 183358

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 516    gacattgaatatgctgtgata 536
              |||||||||||||||||||||
Sbjct: 134393 gacattgaatatgctgtgata 134413
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>emb|AL049873.3|CNS0000T Human chromosome 14 DNA sequence BAC R-112J1 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148133

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    cacaaatgactcaccaaccta 50
             |||||||||||||||||||||
Sbjct: 43543 cacaaatgactcaccaaccta 43523
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>gb|AC106785.3| Homo sapiens chromosome 16 clone RP11-352B15, complete sequence
          Length = 177461

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 521   tgaatatgctgtgataaaaac 541
             |||||||||||||||||||||
Sbjct: 92752 tgaatatgctgtgataaaaac 92732
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>dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-94H14, complete
             sequence
          Length = 142000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   gaaggtggctgccatggagca 146
             |||||||||||||||||||||
Sbjct: 52455 gaaggtggctgccatggagca 52475
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>gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complete sequence
          Length = 121661

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   cacaggaagtgcaggtgaac 428
             ||||||||||||||||||||
Sbjct: 46043 cacaggaagtgcaggtgaac 46024
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>ref|XM_519928.1| PREDICTED: Pan troglodytes similar to mitochondrial ribosomal
           protein L13 (LOC464359), mRNA
          Length = 853

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 486 aagagataccatattctagaaaaa 509
           ||||||||||||||||||| ||||
Sbjct: 124 aagagataccatattctagcaaaa 101
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>gb|AE001389.2| Plasmodium falciparum 3D7 chromosome 2 section 26 of 73 of the
            complete sequence
          Length = 10129

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 547  ctcctgttcctgatgatctt 566
            ||||||||||||||||||||
Sbjct: 3655 ctcctgttcctgatgatctt 3674
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>gb|BC009190.2| Homo sapiens mitochondrial ribosomal protein L13, mRNA (cDNA clone
           MGC:15170 IMAGE:3956315), complete cds
          Length = 860

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 486 aagagataccatattctagaaaaa 509
           ||||||||||||||||||| ||||
Sbjct: 106 aagagataccatattctagcaaaa 83
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>ref|NM_014078.4| Homo sapiens mitochondrial ribosomal protein L13 (MRPL13), nuclear
           gene encoding mitochondrial protein, mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 486 aagagataccatattctagaaaaa 509
           ||||||||||||||||||| ||||
Sbjct: 375 aagagataccatattctagcaaaa 352
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>gb|AC130826.4| Mus musculus BAC clone RP23-400F13 from chromosome 16, complete sequence
          Length = 186059

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 236    ctactgttactgaaagcattaataaagc 263
              ||||| |||||||| |||||||||||||
Sbjct: 157147 ctacttttactgaaggcattaataaagc 157120
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>emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on chromosome 9 Contains a
             novel gene (FLJ33868) and 2 CpG islands, complete sequence
          Length = 174911

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   ttactgaaagcattaataaa 261
             ||||||||||||||||||||
Sbjct: 89300 ttactgaaagcattaataaa 89281
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>emb|AL357673.12| Human DNA sequence from clone RP11-446E24 on chromosome 1 Contains a
             novel protein, two novel genes and the 5' end of the
             MRPL37 gene for  mitochondrial ribosomal protein L37,
             complete sequence
          Length = 93717

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 103   gccaaaatatcacttgtggaagagaagg 130
             |||||||||||| || ||||||||||||
Sbjct: 70499 gccaaaatatcagttctggaagagaagg 70472
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>emb|Z67757.1|SPAC24B11 S.pombe chromosome I cosmid c24B11
          Length = 33914

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   tactgaaagcattaataaag 262
             ||||||||||||||||||||
Sbjct: 20008 tactgaaagcattaataaag 20027
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>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7
          Length = 349823

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    aagcctatcccaatacaggg 453
              ||||||||||||||||||||
Sbjct: 124081 aagcctatcccaatacaggg 124100
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>gb|BC021744.2| Homo sapiens mitochondrial ribosomal protein L13, mRNA (cDNA clone
           MGC:33899 IMAGE:5260243), complete cds
          Length = 1101

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 486 aagagataccatattctagaaaaa 509
           ||||||||||||||||||| ||||
Sbjct: 354 aagagataccatattctagcaaaa 331
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>gb|AC026671.18| Homo sapiens 3 BAC RP11-91M9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 141674

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tatcacttgtggaagagaag 129
             ||||||||||||||||||||
Sbjct: 73108 tatcacttgtggaagagaag 73127
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>gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, complete sequence
          Length = 181925

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 486    aagagataccatattctagaaaaa 509
              ||||||||||||||||||| ||||
Sbjct: 102764 aagagataccatattctagcaaaa 102787
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>gb|AC078785.22| Homo sapiens 3 BAC RP11-572M11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 185735

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   agccaaaatatcacttgtgg 121
             ||||||||||||||||||||
Sbjct: 39252 agccaaaatatcacttgtgg 39271
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 374     gtcaaacaatgaggcaaatggaaa 397
               |||| |||||||||||||||||||
Sbjct: 1883925 gtcagacaatgaggcaaatggaaa 1883902
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>gb|AC096947.2| Homo sapiens chromosome 1 clone RP4-802A10, complete sequence
          Length = 148730

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 366   gcttctcagtcaaacaatgaggca 389
             |||||||||| |||||||||||||
Sbjct: 72750 gcttctcagttaaacaatgaggca 72727
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>gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, complete sequence
          Length = 211445

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   aatctggaaagcacacagga 415
             ||||||||||||||||||||
Sbjct: 54966 aatctggaaagcacacagga 54985
to top
>gb|AC008674.5| Homo sapiens chromosome 5 clone CTB-43E15, complete sequence
          Length = 178502

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 227   gagcatgatctactgttactgaaa 250
             |||||||||||||||| |||||||
Sbjct: 71920 gagcatgatctactgtcactgaaa 71897
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>gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, complete sequence
          Length = 118603

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 460   agagaaagattgttgagttt 479
             ||||||||||||||||||||
Sbjct: 46202 agagaaagattgttgagttt 46183
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>gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, complete sequence
          Length = 96489

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   agagaaagattgttgagttt 479
             ||||||||||||||||||||
Sbjct: 32118 agagaaagattgttgagttt 32137
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>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   cagaaagagataccatattc 501
             ||||||||||||||||||||
Sbjct: 92427 cagaaagagataccatattc 92408
to top
>emb|BX322797.11| Zebrafish DNA sequence from clone CH211-214H9 in linkage group 1,
             complete sequence
          Length = 114797

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gaaagcattaataaagcacg 266
             ||||||||||||||||||||
Sbjct: 47604 gaaagcattaataaagcacg 47623
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>gb|AC158985.2| Mus musculus BAC clone RP23-277H13 from chromosome 16, complete
             sequence
          Length = 174321

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   agaatatggaaaggggagca 231
             ||||||||||||||||||||
Sbjct: 25799 agaatatggaaaggggagca 25780
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>gb|AF112214.1|AF112214 Homo sapiens ribosomal protein L13 mRNA, complete cds
          Length = 862

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 486 aagagataccatattctagaaaaa 509
           ||||||||||||||||||| ||||
Sbjct: 104 aagagataccatattctagcaaaa 81
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>dbj|AP000684.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-57N12, complete
             sequences
          Length = 141977

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gaagaatatggaaaggggag 229
             ||||||||||||||||||||
Sbjct: 29484 gaagaatatggaaaggggag 29465
to top
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 38      actcaccaacctatgcagat 57
               ||||||||||||||||||||
Sbjct: 1287825 actcaccaacctatgcagat 1287844
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>dbj|AP005364.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1970D8, complete
              sequence
          Length = 168850

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 486    aagagataccatattctagaaaaa 509
              ||||||||||||||||||| ||||
Sbjct: 124359 aagagataccatattctagcaaaa 124382
to top
>emb|CR388150.14| Zebrafish DNA sequence from clone DKEY-115A2 in linkage group 3,
             complete sequence
          Length = 170964

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 524   atatgctgtgataaaaacgaaaac 547
             ||||||||||||||||||| ||||
Sbjct: 60293 atatgctgtgataaaaacgtaaac 60270
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>gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosome 14, complete
             sequence
          Length = 210602

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   ttgagtttatcagaaagaga 491
             ||||||||||||||||||||
Sbjct: 81590 ttgagtttatcagaaagaga 81609
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>gb|AC005273.1|AC005273 Homo sapiens chromosome 17, clone hRPK.879_D_6, complete sequence
          Length = 122250

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   acacaggaagtgcaggtgaa 427
             ||||||||||||||||||||
Sbjct: 42392 acacaggaagtgcaggtgaa 42373
to top
>gb|AC135635.5| Mus musculus BAC clone RP23-245M20 from 3, complete sequence
          Length = 192485

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   ggtggaagaatatggaaagg 225
             ||||||||||||||||||||
Sbjct: 77504 ggtggaagaatatggaaagg 77523
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>dbj|AB049640.1| Homo sapiens MRPL13 mRNA for mitochondrial ribosomal protein L13
           (L13mt), complete cds
          Length = 839

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 486 aagagataccatattctagaaaaa 509
           ||||||||||||||||||| ||||
Sbjct: 101 aagagataccatattctagcaaaa 78


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,892,845
Number of Sequences: 3902068
Number of extensions: 5892845
Number of successful extensions: 107838
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107625
Number of HSP's gapped (non-prelim): 200
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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