ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073142.1| Oryza sativa (japonica cultivar-group) cDNA clon... 327 2e-86
2gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome... 270 4e-69
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 270 4e-69
4dbj|AK058751.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
5dbj|AK071931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
6gb|AY107815.1| Zea mays PCO096780 mRNA sequence 82 2e-12
7ref|XM_807466.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.9
8ref|XM_809851.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.9
9gb|AC129299.3| Mus musculus BAC clone RP24-420E16 from chromosom... 42 1.9
10gb|AC117602.9| Mus musculus chromosome 5, clone RP23-462C22, com... 42 1.9
11gb|AE014178.1| Mus musculus piebald deletion region section 6 of... 42 1.9
12dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, comp... 42 1.9
13gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-... 42 1.9
14gb|AC151910.4| Mus musculus BAC clone RP23-67A17 from 14, comple... 42 1.9
15gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s... 42 1.9
16gb|AC161427.4| Gallus gallus BAC clone CH261-60M14 from chromoso... 42 1.9
17gb|AC131670.5| Mus musculus BAC clone RP23-307I19 from 5, comple... 42 1.9
18gb|AC091333.6| Mus musculus chromosome 7, clone RP23-325M1, comp... 40 7.4
19gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome... 40 7.4
20gb|AC138549.3| Mus musculus BAC clone RP23-173C1 from chromosome... 40 7.4
21emb|Z93385.1|CEM01E5 Caenorhabditis elegans Cosmid M01E5, comple... 40 7.4
22emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23... 40 7.4
23emb|X96762.1|CETOPOI C.elegans mRNA for DNA topoisomerase I 40 7.4
24emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in ... 40 7.4
25gb|BC099344.1| Xenopus laevis cDNA clone MGC:116539 IMAGE:694022... 40 7.4
26gb|AC024651.13| Homo sapiens chromosome 15, clone RP11-753A21, c... 40 7.4
27dbj|AK051523.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 7.4
28ref|NM_001026407.2| Caenorhabditis elegans TOPoisomerase family ... 40 7.4
29ref|NM_060936.4| Caenorhabditis elegans TOPoisomerase family mem... 40 7.4
30gb|AC109614.9| Mus musculus chromosome 5, clone RP23-107M21, com... 40 7.4
31gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p... 40 7.4
32gb|AC154585.2| Mus musculus BAC clone RP23-359K10 from 12, compl... 40 7.4
33gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, comple... 40 7.4
34emb|AL354805.23| Mouse DNA sequence from clone RP21-544J17 on ch... 40 7.4
35gb|AC165249.2| Mus musculus BAC clone RP24-157P13 from chromosom... 40 7.4 
>dbj|AK073142.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024D10, full
            insert sequence
          Length = 2461

 Score =  327 bits (165), Expect = 2e-86
 Identities = 455/546 (83%), Gaps = 12/546 (2%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatagctcgtcatctgtcactgcctggaaataatatgaacccacaagnagaaatcccc 69
            |||||||||||| |||| || |||||||||||  || |||| | ||| | ||| |||| |
Sbjct: 1538 gccatagctcgttatctttcgctgcctggaaaggatgtgaatcgaca-ggagacatcctc 1596

                                                                        
Query: 70   agtagatggaccattgccacagtggttccgtgaaggaatggcaggccctatcctaaattc 129
             | |||||||||||||||||| ||||| ||||||||||||| ||| |||||  |||||||
Sbjct: 1597 ggcagatggaccattgccacaatggtttcgtgaaggaatggaaggacctatattaaattc 1656

                                                                        
Query: 130  tggaatgtgcagcgaggtatttcagtttgacatttccactgccac---caattctggtgg 186
            |||||||||||| ||||||||||||||||||||||| || ||  |   |||| |||||||
Sbjct: 1657 tggaatgtgcagtgaggtatttcagtttgacatttcgacggcttctagcaatcctggtgg 1716

                                                                        
Query: 187  cataatacctgcttctccagctgtgaactcctcaagtgttaatgctactcga-aagattc 245
            ||| |||||||| ||||| | ||||||||| |||||||| |||||||| ||| || || |
Sbjct: 1717 cattatacctgcatctcctgttgtgaactcgtcaagtgtcaatgctac-cgagaaaatcc 1775

                                                                        
Query: 246  caacaccagctcctgcttattacggcaagctgaagaataggaggatcatgtacaatgagg 305
            || |||   || |||||||| | ||||||||||| || || ||  ||||||||||||| |
Sbjct: 1776 cagcacattctgctgcttatcatggcaagctgaaaaacagaagagtcatgtacaatgaag 1835

                                                                        
Query: 306  cggcgattccactcactgggaaaacggtgaacaacacagagccttttaacagaacttctg 365
            ||   ||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||
Sbjct: 1836 cg---attccactcaccgggaagacggcgaacaacacagagccttttaacagaacctctg 1892

                                                                        
Query: 366  aa---agcagcaagttacctgataagaagccagcatcttcggtagttgtttccgtgctag 422
            ||   |||||||||||||||||||  ||||||||||| || || ||||| || |||||||
Sbjct: 1893 aaagcagcagcaagttacctgatagcaagccagcatcatcagttgttgtctcggtgctag 1952

                                                                        
Query: 423  ctgaccccagggaggctggtgatggcgacagtgatccgaggatgactccgaagtccctct 482
            | || || |||||||||||| |||| ||  | ||||||||  |  |||||||  |||| |
Sbjct: 1953 ccgatccaagggaggctggtaatggggatggcgatccgagagtatctccgaaacccctgt 2012

                                                                        
Query: 483  ccaggatatttgttgttgttctccttgatggtgtcagatatgtcacatactcctgcactc 542
            ||| ||||||||||||||||||  |||| ||||| ||||||||||| ||||||||||| |
Sbjct: 2013 ccaagatatttgttgttgttcttgttgacggtgtgagatatgtcacttactcctgcacgc 2072

                  
Query: 543  ttcctt 548
            ||||||
Sbjct: 2073 ttcctt 2078
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>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02,
              complete sequence
          Length = 178061

 Score =  270 bits (136), Expect = 4e-69
 Identities = 372/446 (83%), Gaps = 11/446 (2%)
 Strand = Plus / Minus

                                                                          
Query: 110    gcaggccctatcctaaattctggaatgtgcagcgaggtatttcagtttgacatttccact 169
              ||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||| || 
Sbjct: 110703 gcaggacctatattaaattctggaatgtgcagtgaggtatttcagtttgacatttcgacg 110644

                                                                          
Query: 170    gccac---caattctggtggcataatacctgcttctccagctgtgaactcctcaagtgtt 226
              ||  |   |||| |||||||||| |||||||| ||||| | ||||||||| |||||||| 
Sbjct: 110643 gcttctagcaatcctggtggcattatacctgcatctcctgttgtgaactcgtcaagtgtc 110584

                                                                          
Query: 227    aatgctactcga-aagattccaacaccagctcctgcttattacggcaagctgaagaatag 285
              |||||||| ||| || || ||| |||   || |||||||| | ||||||||||| || ||
Sbjct: 110583 aatgctac-cgagaaaatcccagcacattctgctgcttatcatggcaagctgaaaaacag 110525

                                                                          
Query: 286    gaggatcatgtacaatgaggcggcgattccactcactgggaaaacggtgaacaacacaga 345
               ||  ||||||||||||| |||   ||||||||||| ||||| |||| ||||||||||||
Sbjct: 110524 aagagtcatgtacaatgaagcg---attccactcaccgggaagacggcgaacaacacaga 110468

                                                                          
Query: 346    gccttttaacagaacttctgaa---agcagcaagttacctgataagaagccagcatcttc 402
              ||||||||||||||| ||||||   |||||||||||||||||||  ||||||||||| ||
Sbjct: 110467 gccttttaacagaacctctgaaagcagcagcaagttacctgatagcaagccagcatcatc 110408

                                                                          
Query: 403    ggtagttgtttccgtgctagctgaccccagggaggctggtgatggcgacagtgatccgag 462
               || ||||| || |||||||| || || |||||||||||| |||| ||  | ||||||||
Sbjct: 110407 agttgttgtctcggtgctagccgatccaagggaggctggtaatggggatggcgatccgag 110348

                                                                          
Query: 463    gatgactccgaagtccctctccaggatatttgttgttgttctccttgatggtgtcagata 522
                |  |||||||  |||| |||| ||||||||||||||||||  |||| ||||| |||||
Sbjct: 110347 agtatctccgaaacccctgtccaagatatttgttgttgttcttgttgacggtgtgagata 110288

                                        
Query: 523    tgtcacatactcctgcactcttcctt 548
              |||||| ||||||||||| |||||||
Sbjct: 110287 tgtcacttactcctgcacgcttcctt 110262



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/101 (84%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                          
Query: 10     gccatagctcgtcatctgtcactgcctggaaataatatgaacccacaagnagaaatcccc 69
              |||||||||||| |||| || |||||||||||  || |||| | ||| | ||| |||| |
Sbjct: 112482 gccatagctcgttatctttcgctgcctggaaaggatgtgaatcgaca-ggagacatcctc 112424

                                                       
Query: 70     agtagatggaccattgccacagtggttccgtgaaggaatgg 110
               | |||||||||||||||||| ||||| |||||||||||||
Sbjct: 112423 ggcagatggaccattgccacaatggtttcgtgaaggaatgg 112383
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  270 bits (136), Expect = 4e-69
 Identities = 372/446 (83%), Gaps = 11/446 (2%)
 Strand = Plus / Minus

                                                                            
Query: 110      gcaggccctatcctaaattctggaatgtgcagcgaggtatttcagtttgacatttccact 169
                ||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||| || 
Sbjct: 19969539 gcaggacctatattaaattctggaatgtgcagtgaggtatttcagtttgacatttcgacg 19969480

                                                                            
Query: 170      gccac---caattctggtggcataatacctgcttctccagctgtgaactcctcaagtgtt 226
                ||  |   |||| |||||||||| |||||||| ||||| | ||||||||| |||||||| 
Sbjct: 19969479 gcttctagcaatcctggtggcattatacctgcatctcctgttgtgaactcgtcaagtgtc 19969420

                                                                            
Query: 227      aatgctactcga-aagattccaacaccagctcctgcttattacggcaagctgaagaatag 285
                |||||||| ||| || || ||| |||   || |||||||| | ||||||||||| || ||
Sbjct: 19969419 aatgctac-cgagaaaatcccagcacattctgctgcttatcatggcaagctgaaaaacag 19969361

                                                                            
Query: 286      gaggatcatgtacaatgaggcggcgattccactcactgggaaaacggtgaacaacacaga 345
                 ||  ||||||||||||| |||   ||||||||||| ||||| |||| ||||||||||||
Sbjct: 19969360 aagagtcatgtacaatgaagcg---attccactcaccgggaagacggcgaacaacacaga 19969304

                                                                            
Query: 346      gccttttaacagaacttctgaa---agcagcaagttacctgataagaagccagcatcttc 402
                ||||||||||||||| ||||||   |||||||||||||||||||  ||||||||||| ||
Sbjct: 19969303 gccttttaacagaacctctgaaagcagcagcaagttacctgatagcaagccagcatcatc 19969244

                                                                            
Query: 403      ggtagttgtttccgtgctagctgaccccagggaggctggtgatggcgacagtgatccgag 462
                 || ||||| || |||||||| || || |||||||||||| |||| ||  | ||||||||
Sbjct: 19969243 agttgttgtctcggtgctagccgatccaagggaggctggtaatggggatggcgatccgag 19969184

                                                                            
Query: 463      gatgactccgaagtccctctccaggatatttgttgttgttctccttgatggtgtcagata 522
                  |  |||||||  |||| |||| ||||||||||||||||||  |||| ||||| |||||
Sbjct: 19969183 agtatctccgaaacccctgtccaagatatttgttgttgttcttgttgacggtgtgagata 19969124

                                          
Query: 523      tgtcacatactcctgcactcttcctt 548
                |||||| ||||||||||| |||||||
Sbjct: 19969123 tgtcacttactcctgcacgcttcctt 19969098



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/101 (84%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                            
Query: 10       gccatagctcgtcatctgtcactgcctggaaataatatgaacccacaagnagaaatcccc 69
                |||||||||||| |||| || |||||||||||  || |||| | ||| | ||| |||| |
Sbjct: 19971318 gccatagctcgttatctttcgctgcctggaaaggatgtgaatcgaca-ggagacatcctc 19971260

                                                         
Query: 70       agtagatggaccattgccacagtggttccgtgaaggaatgg 110
                 | |||||||||||||||||| ||||| |||||||||||||
Sbjct: 19971259 ggcagatggaccattgccacaatggtttcgtgaaggaatgg 19971219
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>dbj|AK058751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H09, full
           insert sequence
          Length = 778

 Score =  268 bits (135), Expect = 2e-68
 Identities = 362/433 (83%), Gaps = 11/433 (2%)
 Strand = Plus / Plus

                                                                       
Query: 123 taaattctggaatgtgcagcgaggtatttcagtttgacatttccactgccac---caatt 179
           ||||||||||||||||||| ||||||||||||||||||||||| || ||  |   |||| 
Sbjct: 5   taaattctggaatgtgcagtgaggtatttcagtttgacatttcgacggcttctagcaatc 64

                                                                       
Query: 180 ctggtggcataatacctgcttctccagctgtgaactcctcaagtgttaatgctactcga- 238
           |||||||||| |||||||| ||||| | ||||||||| |||||||| |||||||| ||| 
Sbjct: 65  ctggtggcattatacctgcatctcctgttgtgaactcgtcaagtgtcaatgctac-cgag 123

                                                                       
Query: 239 aagattccaacaccagctcctgcttattacggcaagctgaagaataggaggatcatgtac 298
           || || ||| |||   || |||||||| | ||||||||||| || || ||  ||||||||
Sbjct: 124 aaaatcccagcacattctgctgcttatcatggcaagctgaaaaacagaagagtcatgtac 183

                                                                       
Query: 299 aatgaggcggcgattccactcactgggaaaacggtgaacaacacagagccttttaacaga 358
           ||||| |||   ||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct: 184 aatgaagcg---attccactcaccgggaagacggcgaacaacacagagccttttaacaga 240

                                                                       
Query: 359 acttctgaa---agcagcaagttacctgataagaagccagcatcttcggtagttgtttcc 415
           || ||||||   |||||||||||||||||||  ||||||||||| || || ||||| || 
Sbjct: 241 acctctgaaagcagcagcaagttacctgatagcaagccagcatcatcagttgttgtctcg 300

                                                                       
Query: 416 gtgctagctgaccccagggaggctggtgatggcgacagtgatccgaggatgactccgaag 475
           |||||||| || || |||||||||||| |||| ||  | ||||||||  |  ||||||| 
Sbjct: 301 gtgctagccgatccaagggaggctggtaatggggatggcgatccgagagtatctccgaaa 360

                                                                       
Query: 476 tccctctccaggatatttgttgttgttctccttgatggtgtcagatatgtcacatactcc 535
            |||| |||| ||||||||||||||||||  |||| ||||| ||||||||||| ||||||
Sbjct: 361 cccctgtccaagatatttgttgttgttcttgttgacggtgtgagatatgtcacttactcc 420

                        
Query: 536 tgcactcttcctt 548
           ||||| |||||||
Sbjct: 421 tgcacgcttcctt 433
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>dbj|AK071931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081D14, full
           insert sequence
          Length = 1544

 Score =  165 bits (83), Expect = 2e-37
 Identities = 193/228 (84%), Gaps = 4/228 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  gccatagctcgtcatctgtcactgcctggaaataatatgaacccacaagnagaaatcccc 69
           |||||||||||| |||| || |||||||||||  || |||| | ||| | ||| |||| |
Sbjct: 760 gccatagctcgttatctttcgctgcctggaaaggatgtgaatcgaca-ggagacatcctc 818

                                                                       
Query: 70  agtagatggaccattgccacagtggttccgtgaaggaatggcaggccctatcctaaattc 129
            | |||||||||||||||||| ||||| ||||||||||||| ||| |||||  |||||||
Sbjct: 819 ggcagatggaccattgccacaatggtttcgtgaaggaatggaaggacctatattaaattc 878

                                                                       
Query: 130 tggaatgtgcagcgaggtatttcagtttgacatttcca---ctgccaccaattctggtgg 186
           |||||||||||| ||||||||||||||||||||||| |   || | | |||| |||||||
Sbjct: 879 tggaatgtgcagtgaggtatttcagtttgacatttcgacggcttctagcaatcctggtgg 938

                                                           
Query: 187 cataatacctgcttctccagctgtgaactcctcaagtgttaatgctac 234
           ||| |||||||| ||||| | ||||||||| |||||||| ||||||||
Sbjct: 939 cattatacctgcatctcctgttgtgaactcgtcaagtgtcaatgctac 986



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 99/118 (83%)
 Strand = Plus / Plus

                                                                        
Query: 431  agggaggctggtgatggcgacagtgatccgaggatgactccgaagtccctctccaggata 490
            |||||||||||| |||| ||  | ||||||||  |  |||||||  |||| |||| ||||
Sbjct: 1077 agggaggctggtaatggggatggcgatccgagagtatctccgaaacccctgtccaagata 1136

                                                                      
Query: 491  tttgttgttgttctccttgatggtgtcagatatgtcacatactcctgcactcttcctt 548
            ||||||||||||||  |||| ||||| ||||||||||| ||||||||||| |||||||
Sbjct: 1137 tttgttgttgttcttgttgacggtgtgagatatgtcacttactcctgcacgcttcctt 1194
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>gb|AY107815.1| Zea mays PCO096780 mRNA sequence
          Length = 814

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 111/132 (84%), Gaps = 3/132 (2%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggaccattgccacagtggttccgtgaaggaatggcaggccctatcctaaattctgg 132
           ||||| |||| ||||||| ||||||||||||||||||| ||| ||| |  | || || ||
Sbjct: 231 agatgcaccactgccacaatggttccgtgaaggaatggaaggacctgttttgaactcggg 290

                                                                       
Query: 133 aatgtgcagcgaggtatttcagtttgacatttc--ca-ctgccaccaattctggtggcat 189
           ||||||||| ||||||||||||||||| |||||  || || |  |||| |||||||||||
Sbjct: 291 aatgtgcagtgaggtatttcagtttgatatttctccagcttcggccaaatctggtggcat 350

                       
Query: 190 aatacctgcttc 201
            |||||||||||
Sbjct: 351 tatacctgcttc 362



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 113/138 (81%), Gaps = 9/138 (6%)
 Strand = Plus / Plus

                                                                       
Query: 255 ctcctgcttattacggcaagctgaagaataggaggatcatgtacaatgaggcggcgattc 314
           |||||||||||   ||||||||||| || |||||||||||||| || ||   ||| ||||
Sbjct: 413 ctcctgcttataggggcaagctgaaaaacaggaggatcatgtataacga---ggcaattc 469

                                                                       
Query: 315 cactcactgggaaaacggtgaacaacacagagc------cttttaacagaacttctgaaa 368
           |||| ||||| ||||| | |||||||||| |||      |||||||||| ||| ||||||
Sbjct: 470 cacttactggaaaaacagcgaacaacacaaagcctcaggcttttaacagtactgctgaaa 529

                             
Query: 369 gcagcaagttacctgata 386
           |||||||| |||||||||
Sbjct: 530 gcagcaaggtacctgata 547



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 57/68 (83%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 482 tccaggatatttgttgttgttctcctt-gatggtgtcagatatgtcacatactcctgcac 540
           |||||||||||||| || ||||| ||  |||||||||||||| || || ||||| |||| 
Sbjct: 650 tccaggatatttgtcgtcgttctgctccgatggtgtcagatacgtgacttactcgtgcaa 709

                   
Query: 541 tcttcctt 548
            |||||||
Sbjct: 710 acttcctt 717
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>ref|XM_807466.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509561.60) partial mRNA
          Length = 1083

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 339 acacagagccttttaacagaacttctgaa 367
           ||||||||||||||| |||| ||||||||
Sbjct: 887 acacagagccttttaccagaccttctgaa 915
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>ref|XM_809851.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503897.130) partial mRNA
          Length = 1083

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 339 acacagagccttttaacagaacttctgaa 367
           ||||||||||||||| |||| ||||||||
Sbjct: 887 acacagagccttttaccagaccttctgaa 915
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>gb|AC129299.3| Mus musculus BAC clone RP24-420E16 from chromosome 14, complete
             sequence
          Length = 156372

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 482   tccaggatatttgttgttgtt 502
             |||||||||||||||||||||
Sbjct: 97289 tccaggatatttgttgttgtt 97309
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>gb|AC117602.9| Mus musculus chromosome 5, clone RP23-462C22, complete sequence
          Length = 205604

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 353    aacagaacttctgaaagcagcaagt 377
              |||||||||||| ||||||||||||
Sbjct: 175911 aacagaacttctaaaagcagcaagt 175935
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>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete
              sequence
          Length = 400029

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 482    tccaggatatttgttgttgtt 502
              |||||||||||||||||||||
Sbjct: 103383 tccaggatatttgttgttgtt 103403
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>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
          Length = 1857073

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 244     tccaacaccagctcctgctta 264
               |||||||||||||||||||||
Sbjct: 1511112 tccaacaccagctcctgctta 1511132
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>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence
          Length = 179757

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 149    tttcagtttgacatttccact 169
              |||||||||||||||||||||
Sbjct: 158793 tttcagtttgacatttccact 158813
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>gb|AC151910.4| Mus musculus BAC clone RP23-67A17 from 14, complete sequence
          Length = 207254

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 482    tccaggatatttgttgttgtt 502
              |||||||||||||||||||||
Sbjct: 205780 tccaggatatttgttgttgtt 205800
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>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    tccaacaccagctcctgctta 264
              |||||||||||||||||||||
Sbjct: 969085 tccaacaccagctcctgctta 969105
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>gb|AC161427.4| Gallus gallus BAC clone CH261-60M14 from chromosome ul, complete
             sequence
          Length = 174770

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 349   ttttaacagaacttctgaaag 369
             |||||||||||||||||||||
Sbjct: 77735 ttttaacagaacttctgaaag 77715
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>gb|AC131670.5| Mus musculus BAC clone RP23-307I19 from 5, complete sequence
          Length = 197080

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 353    aacagaacttctgaaagcagcaagt 377
              |||||||||||| ||||||||||||
Sbjct: 169029 aacagaacttctaaaagcagcaagt 169005
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>gb|AC091333.6| Mus musculus chromosome 7, clone RP23-325M1, complete sequence
          Length = 192111

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   gaagaataggaggatcatgt 296
             ||||||||||||||||||||
Sbjct: 88164 gaagaataggaggatcatgt 88183
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>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete sequence
          Length = 235095

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gattccaacaccagctcctg 260
             ||||||||||||||||||||
Sbjct: 75856 gattccaacaccagctcctg 75875
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>gb|AC138549.3| Mus musculus BAC clone RP23-173C1 from chromosome 7, complete sequence
          Length = 203651

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   gaagaataggaggatcatgt 296
             ||||||||||||||||||||
Sbjct: 88008 gaagaataggaggatcatgt 88027
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>emb|Z93385.1|CEM01E5 Caenorhabditis elegans Cosmid M01E5, complete sequence
          Length = 27848

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   ggcgacagtgatccgaggat 465
             ||||||||||||||||||||
Sbjct: 23947 ggcgacagtgatccgaggat 23928
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>emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23 on chromosome 1p35.1-36.12
             Contains the 3' end of the gene for sister-of-mammalian
             grainyhead (SOM), a novel gene (LOC90529) and a novel gene
             (DJ462O23.2), complete sequence
          Length = 154154

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   gtccctctccaggatatttg 494
             ||||||||||||||||||||
Sbjct: 43853 gtccctctccaggatatttg 43834
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>emb|X96762.1|CETOPOI C.elegans mRNA for DNA topoisomerase I
          Length = 3237

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  ggcgacagtgatccgaggat 465
            ||||||||||||||||||||
Sbjct: 2419 ggcgacagtgatccgaggat 2400
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>emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in linkage group 5, complete
              sequence
          Length = 142808

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    aacttctgaaagcagcaagt 377
              ||||||||||||||||||||
Sbjct: 130144 aacttctgaaagcagcaagt 130163
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>gb|BC099344.1| Xenopus laevis cDNA clone MGC:116539 IMAGE:6940227, complete cds
          Length = 1694

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 522  atgtcacatactcctgcact 541
            ||||||||||||||||||||
Sbjct: 1566 atgtcacatactcctgcact 1585
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>gb|AC024651.13| Homo sapiens chromosome 15, clone RP11-753A21, complete sequence
          Length = 212185

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 185    ggcataatacctgcttctccagct 208
              |||||||| |||||||||||||||
Sbjct: 139363 ggcataatccctgcttctccagct 139386
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>dbj|AK051523.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130054K04
           product:unclassifiable, full insert sequence
          Length = 1870

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 154 gtttgacatttccactgcca 173
           ||||||||||||||||||||
Sbjct: 596 gtttgacatttccactgcca 577
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>ref|NM_001026407.2| Caenorhabditis elegans TOPoisomerase family member (top-1) (top-1)
            mRNA, complete cds
          Length = 2317

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  ggcgacagtgatccgaggat 465
            ||||||||||||||||||||
Sbjct: 2203 ggcgacagtgatccgaggat 2184
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>ref|NM_060936.4| Caenorhabditis elegans TOPoisomerase family member (top-1) (top-1)
            mRNA, complete cds
          Length = 3219

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  ggcgacagtgatccgaggat 465
            ||||||||||||||||||||
Sbjct: 2419 ggcgacagtgatccgaggat 2400
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>gb|AC109614.9| Mus musculus chromosome 5, clone RP23-107M21, complete sequence
          Length = 194308

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gtttgacatttccactgcca 173
             ||||||||||||||||||||
Sbjct: 27055 gtttgacatttccactgcca 27074
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>gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p, complete sequence
          Length = 191566

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    aacagaacttctgaaagcag 372
              ||||||||||||||||||||
Sbjct: 144831 aacagaacttctgaaagcag 144812
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>gb|AC154585.2| Mus musculus BAC clone RP23-359K10 from 12, complete sequence
          Length = 198520

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  tacctgcttctccagctgtg 211
            ||||||||||||||||||||
Sbjct: 6382 tacctgcttctccagctgtg 6363
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>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence
          Length = 192261

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gattccaacaccagctcctg 260
             ||||||||||||||||||||
Sbjct: 50048 gattccaacaccagctcctg 50029
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>emb|AL354805.23| Mouse DNA sequence from clone RP21-544J17 on chromosome 5, complete
             sequence
          Length = 103922

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gtttgacatttccactgcca 173
             ||||||||||||||||||||
Sbjct: 59653 gtttgacatttccactgcca 59672
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>gb|AC165249.2| Mus musculus BAC clone RP24-157P13 from chromosome 12, complete
             sequence
          Length = 193902

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   tacctgcttctccagctgtg 211
             ||||||||||||||||||||
Sbjct: 68480 tacctgcttctccagctgtg 68499


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,661,545
Number of Sequences: 3902068
Number of extensions: 5661545
Number of successful extensions: 98908
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98784
Number of HSP's gapped (non-prelim): 110
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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