ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9b06 |
|---|---|
| Clone Library Name | barley_pub |
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 387 bits (994), Expect = e-107 Identities = 178/217 (82%), Positives = 199/217 (91%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 NTTIYP+TS+PLL+YC LPA+CL T +FI+P+ISN+ASIWF++LFLSIFATGILEMRWSG Sbjct: 840 NTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEMRWSG 899 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 VGIDEWWRNEQFWVIGG+SAHLFAVFQG+LKVLAGIDTNFTVTSKA+DE+GDFAELY+FK Sbjct: 900 VGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDEDGDFAELYLFK 959 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N+VGVVAG SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG Sbjct: 960 WTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 1019 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGP 652 RQNRTPTIV+VW+VLLASIFSLLWVR+DPFT+R+ GP Sbjct: 1020 RQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGP 1056
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 354 bits (909), Expect = 1e-97 Identities = 162/210 (77%), Positives = 183/210 (87%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 NT +YP+TS+PL+ YCILPA CL+T +FI+PEISN ASIWFI LF+SI TGILE+RWSG Sbjct: 855 NTIVYPITSIPLIAYCILPAFCLITDRFIIPEISNYASIWFILLFISIAVTGILELRWSG 914 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 V I++WWRNEQFWVIGG SAHLFAVFQGLLKVLAGIDTNFTVTSKA DE+GDFAELY+FK Sbjct: 915 VSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDEDGDFAELYIFK 974 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N++G+VAG SYA+NSGYQSWGPLFGKLFFA WVI HLYPFLKGL+G Sbjct: 975 WTALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLG 1034 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPF 631 RQNRTPTIVIVW+VLLASIFSLLWVR++PF Sbjct: 1035 RQNRTPTIVIVWSVLLASIFSLLWVRINPF 1064
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 349 bits (896), Expect = 4e-96 Identities = 166/217 (76%), Positives = 184/217 (84%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 NTTIYP TS+PLL YCILPAICLLT KFIMP IS AS++FI+LF+SI TGILE+RWSG Sbjct: 802 NTTIYPFTSIPLLAYCILPAICLLTDKFIMPPISTFASLFFISLFMSIIVTGILELRWSG 861 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 V I+EWWRNEQFWVIGGISAHLFAV QGLLK+LAGIDTNFTVTSKA D++ DF ELY FK Sbjct: 862 VSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDDD-DFGELYAFK 920 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N+VGVVAG S AIN+GYQSWGPLFGKLFF+FWVIVHLYPFLKGLMG Sbjct: 921 WTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMG 980 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGP 652 RQNRTPTIV++W+VLLASIFSLLWVR+DPF + GP Sbjct: 981 RQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGP 1017
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 340 bits (873), Expect = 2e-93 Identities = 159/218 (72%), Positives = 183/218 (83%), Gaps = 1/218 (0%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 NT +YP TS+PLL YC +PA+CLLTGKFI+P I+N ASIWF+ALFLSI AT ILE+RWSG Sbjct: 823 NTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRWSG 882 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSK-ANDEEGDFAELYMF 358 V I++ WRNEQFWVIGG+SAHLFAVFQGLLKVL G+DTNFTVTSK A+DE +F +LY+F Sbjct: 883 VSINDLWRNEQFWVIGGVSAHLFAVFQGLLKVLFGVDTNFTVTSKGASDEADEFGDLYLF 942 Query: 359 KWXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLM 538 KW NMVGVVAG S AIN+GY SWGPLFGKLFFAFWVIVHLYPFLKGLM Sbjct: 943 KWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLM 1002 Query: 539 GRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGP 652 GRQNRTPTIV++W++LLASIFSL+WVR+DPF + GP Sbjct: 1003 GRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGP 1040
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 338 bits (866), Expect = 1e-92 Identities = 154/212 (72%), Positives = 180/212 (84%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 NT +YP+TS+PLL YC+LPA CL+T FI+PEISNLAS+ F+ LF SI+A+ ILE++WS Sbjct: 842 NTIVYPITSIPLLAYCMLPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILELKWSD 901 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 V +++WWRNEQFWVIGG SAHLFAVFQGLLKV AGIDTNFTVTSKA+DE+GDFAELY+FK Sbjct: 902 VALEDWWRNEQFWVIGGTSAHLFAVFQGLLKVFAGIDTNFTVTSKASDEDGDFAELYVFK 961 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N+VG+VAG SYAINSGYQSWGPL GKL FAFWV+ HLYPFLKGL+G Sbjct: 962 WTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLG 1021 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTT 637 RQNRTPTIVIVW+ LLASIFSLLWVR++PF + Sbjct: 1022 RQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 320 bits (821), Expect = 2e-87 Identities = 149/217 (68%), Positives = 181/217 (83%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 N+ +YP TSLPL+VYC LPAICLLTGKFI+PEISN ASI F+ALF SI TGILEM+W Sbjct: 860 NSVVYPWTSLPLIVYCSLPAICLLTGKFIVPEISNYASILFMALFSSIAITGILEMQWGK 919 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 VGID+WWRNEQFWVIGG+SAHLFA+FQGLLKVLAG+DTNFTVTSKA D +G+F++LY+FK Sbjct: 920 VGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKAAD-DGEFSDLYLFK 978 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N++GV+ G S AI++GY SWGPLFG+LFFA WVI+HLYPFLKGL+G Sbjct: 979 WTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLG 1038 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGP 652 +Q+R PTI++VW++LLASI +LLWVRV+PF + GP Sbjct: 1039 KQDRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGP 1074
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 320 bits (821), Expect = 2e-87 Identities = 150/217 (69%), Positives = 182/217 (83%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 N+ +YP TS+PLLVYC LPAICLLTGKFI+PEISN ASI F+ALF SI TGILEM+W Sbjct: 845 NSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASILFMALFGSIAVTGILEMQWGK 904 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 VGID+WWRNEQFWVIGG+SAHLFA+FQGLLKVLAG++TNFTVTSKA D +G+F+ELY+FK Sbjct: 905 VGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVETNFTVTSKAAD-DGEFSELYIFK 963 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N++GV+ G S AI++GY SWGPLFG+LFFAFWVI+HLYPFLKGL+G Sbjct: 964 WTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLG 1023 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGP 652 +Q+R PTI++VW++LLASI +LLWVRV+PF + GP Sbjct: 1024 KQDRMPTIILVWSILLASILTLLWVRVNPFVAK-GGP 1059
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 319 bits (818), Expect = 4e-87 Identities = 146/213 (68%), Positives = 178/213 (83%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 N+ +YP TSLPLLVYC LPAICLLTGKFI+PEISN A I F+ +F+SI TGILEM+W Sbjct: 863 NSVVYPWTSLPLLVYCSLPAICLLTGKFIVPEISNYAGILFLLMFMSIAVTGILEMQWGK 922 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 +GID+WWRNEQFWVIGG+S+HLFA+FQGLLKVLAG+ TNFTVTSKA D +G+F+ELY+FK Sbjct: 923 IGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAAD-DGEFSELYIFK 981 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N+VGV+ G S AIN+GY SWGPLFG+LFFA WVIVHLYPFLKGL+G Sbjct: 982 WTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLG 1041 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 640 +Q+R PTI++VW++LLASI +LLWVRV+PF ++ Sbjct: 1042 KQDRVPTIILVWSILLASILTLLWVRVNPFVSK 1074
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 316 bits (809), Expect = 4e-86 Identities = 145/213 (68%), Positives = 177/213 (83%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 NT +YP TSLPL+ YC LPAICLLTGKFI+P +SNLAS+ F+ LF+SI T +LE+RWSG Sbjct: 759 NTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSG 818 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 V I++ WRNEQFWVIGG+SAHLFAVFQG LK+LAG+DTNFTVTSK D+ +F ELY+ K Sbjct: 819 VSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKTADDL-EFGELYIVK 877 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N+VGVVAG S A+N GY++WGPLFGK+FFAFWVI+HLYPFLKGLMG Sbjct: 878 WTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMG 937 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 640 RQNRTPTIVI+W++LLAS+FSL+WVR++PF ++ Sbjct: 938 RQNRTPTIVILWSILLASVFSLVWVRINPFVSK 970
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 314 bits (805), Expect = 1e-85 Identities = 144/217 (66%), Positives = 179/217 (82%) Frame = +2 Query: 2 NTTIYPLTSLPLLVYCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSG 181 N+ +YP TSLPL+VYC LPA+CLLTGKFI+PEISN A I F+ +F+SI TGILEM+W G Sbjct: 859 NSVVYPWTSLPLIVYCSLPAVCLLTGKFIVPEISNYAGILFMLMFISIAVTGILEMQWGG 918 Query: 182 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEEGDFAELYMFK 361 VGID+WWRNEQFWVIGG S+HLFA+FQGLLKVLAG++TNFTVTSKA D +G F+ELY+FK Sbjct: 919 VGIDDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAAD-DGAFSELYIFK 977 Query: 362 WXXXXXXXXXXXXXNMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 541 W N++GV+ G S AI++GY SWGPLFG+LFFA WVIVHLYPFLKG++G Sbjct: 978 WTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLG 1037 Query: 542 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGP 652 +Q++ PTI++VW++LLASI +LLWVRV+PF + GP Sbjct: 1038 KQDKMPTIIVVWSILLASILTLLWVRVNPFVAK-GGP 1073
>SPR4_CAEEL (O17582) Suppressor of presenilin protein 4| Length = 1311 Score = 34.3 bits (77), Expect = 0.33 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = -3 Query: 424 SNDTDHVNDQDGRRRDEKRRPLEHVELSKVAFFVISL*GDSEVGVDTGKHLQKTLKDGKQ 245 S+ TD +++ R+ KR+ L+ VE +V + G D G + Q+ K KQ Sbjct: 868 SSLTDLNSEKMNERKSTKRKMLDKVEKMEVGEDEEDDEESVDKGTDDGDYKQRPEKKRKQ 927 Query: 244 MGRDTSNDPELF 209 + ++DPELF Sbjct: 928 SSEEPASDPELF 939
>CI090_CHICK (Q5ZI27) Protein C9orf90 homolog| Length = 330 Score = 30.8 bits (68), Expect = 3.7 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 454 PILGAALREALLCLLGDCSLIPLPQGSYGQAKPHTDDCHRL 576 P++ +++ + LLG+ ++I LP G G + D HRL Sbjct: 120 PVILTPMQQRICNLLGEATIISLPSGDCGAGRRDRDPHHRL 160
>SCRB1_CRIGR (Q60417) Scavenger receptor class B member 1 (SRB1) (SR-BI)| (HaSR-BI) Length = 509 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = +2 Query: 53 LPAICLLTGKF-IMPEISNLASIWFIALFLSI--FATGILEMRWSGVGIDEWWRNEQFWV 223 LP + + GKF + E++N S F +F + F+ L RW+G+ +W +EQ + Sbjct: 195 LPDMFPIKGKFGLFVEMNNSDSGLF-TVFTGVQNFSKIHLVDRWNGLSKVNYWHSEQCNM 253 Query: 224 IGGISAHLFAVF 259 I G S ++A F Sbjct: 254 INGTSGQMWAPF 265
>EMRE_ECOLI (P23895) Protein emrE (Methyl viologen resistance protein C)| (Ethidium resistance protein) Length = 110 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 110 ASIWFIALFLSIFATGILEMRWSGVGI 190 AS W +A L+ TGI WSGVGI Sbjct: 42 ASFWLLAQTLAYIPTGIAYAIWSGVGI 68
>TGT_LEPIN (Q8CXS3) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 374 Score = 29.6 bits (65), Expect = 8.2 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 170 RWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTS 313 RW+ + + W +N+ S HLF +FQG GID +F + S Sbjct: 166 RWAEMSVQYWEKNKN-------SQHLFGIFQG------GIDLDFRLES 200
>TGT_LEPIC (Q72TL3) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 374 Score = 29.6 bits (65), Expect = 8.2 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 170 RWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTS 313 RW+ + + W +N+ S HLF +FQG GID +F + S Sbjct: 166 RWAEMSVQYWEKNKN-------SQHLFGIFQG------GIDLDFRLES 200
>SCRB1_MOUSE (Q61009) Scavenger receptor class B member 1 (SRB1) (SR-BI)| Length = 509 Score = 29.6 bits (65), Expect = 8.2 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 53 LPAICLLTGKFIMPEISNLASIWFIALFLSI--FATGILEMRWSGVGIDEWWRNEQFWVI 226 LP + + GKF + N ++ +F + F+ L +W+G+ ++W +EQ +I Sbjct: 195 LPDMLPIKGKFGLFVGMNNSNSGVFTVFTGVQNFSRIHLVDKWNGLSKIDYWHSEQCNMI 254 Query: 227 GGISAHLFAVF 259 G S ++A F Sbjct: 255 NGTSGQMWAPF 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,884,999 Number of Sequences: 219361 Number of extensions: 2003728 Number of successful extensions: 5720 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5504 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5712 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
