ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_614123.2| PREDICTED: Bos taurus similar to Lipid phosphat... 36 4.2
2emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4,... 36 4.2
3gb|BC102920.1| Bos taurus cDNA clone MGC:128313 IMAGE:7986990, c... 36 4.2
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.2

>ref|XM_614123.2| PREDICTED: Bos taurus similar to Lipid phosphate phosphohydrolase 3
           (Phosphatidic acid phosphatase 2b) (Phosphatidate
           phosphohydrolase type 2b) (PAP2b) (PAP-2b) (PAP2-beta)
           (Differentially expressed in rat intestine 42) (Dri42)
           (LOC534372), mRNA
          Length = 901

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 21  tcttgctctctgcgacga 38
           ||||||||||||||||||
Sbjct: 605 tcttgctctctgcgacga 588



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>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08,
              complete sequence
          Length = 166951

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     ctagatagtgatcttgct 27
              ||||||||||||||||||
Sbjct: 148513 ctagatagtgatcttgct 148530



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>gb|BC102920.1| Bos taurus cDNA clone MGC:128313 IMAGE:7986990, complete cds
          Length = 1589

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 21  tcttgctctctgcgacga 38
           ||||||||||||||||||
Sbjct: 561 tcttgctctctgcgacga 544



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 10       ctagatagtgatcttgct 27
                ||||||||||||||||||
Sbjct: 31975647 ctagatagtgatcttgct 31975664


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 272,120
Number of Sequences: 3902068
Number of extensions: 272120
Number of successful extensions: 65360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65333
Number of HSP's gapped (non-prelim): 27
length of query: 39
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 19
effective length of database: 17,155,003,908
effective search space: 325945074252
effective search space used: 325945074252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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