Clone Information

BLAST Search Result

Clone Name	bags9b02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483828.1\| Oryza sativa (japonica cultivar-group), mRNA	165	2e-37
2	dbj\|AK071244.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	165	2e-37
3	ref\|XM_483401.1\| Oryza sativa (japonica cultivar-group), mRNA	115	1e-22
4	dbj\|AK063901.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	115	1e-22
5	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	94	5e-16
6	dbj\|AP005411.3\| Oryza sativa (japonica cultivar-group) genomic D...	94	5e-16
7	dbj\|AP004623.3\| Oryza sativa (japonica cultivar-group) genomic D...	94	5e-16
8	dbj\|AP003887.3\| Oryza sativa (japonica cultivar-group) genomic D...	76	1e-10
9	dbj\|AP003865.2\| Oryza sativa (japonica cultivar-group) genomic D...	76	1e-10
10	gb\|AC024796.1\| Caenorhabditis elegans cosmid Y48G1C, complete se...	46	0.11
11	gb\|AC091652.4\| Homo sapiens BAC clone RP11-26I6 from 7, complete...	44	0.45
12	emb\|AJ342773.1\|HSA342773 Homo sapiens genomic sequence surroundi...	44	0.45
13	emb\|AJ343409.1\|HSA343409 Homo sapiens genomic sequence surroundi...	44	0.45
14	emb\|AJ343381.1\|HSA343381 Homo sapiens genomic sequence surroundi...	44	0.45
15	gb\|CP000036.1\| Shigella boydii Sb227, complete genome	42	1.8
16	gb\|CP000038.1\| Shigella sonnei Ss046, complete genome	42	1.8
17	gb\|AE008632.1\| Rickettsia conorii str. Malish 7, section 64 of 1...	40	7.0
18	gb\|AY452488.1\| Pseudomonas frederiksbergensis alkane hydroxylase...	40	7.0
19	emb\|AL731545.4\| Human DNA sequence from clone RP11-431F18 on chr...	40	7.0
20	emb\|AL591206.9\| Human DNA sequence from clone RP11-151J10 on chr...	40	7.0
21	emb\|AL590290.5\| Human DNA sequence from clone RP11-228O6 on chro...	40	7.0
22	emb\|AL391809.21\| Human DNA sequence from clone RP11-47A4 on chro...	40	7.0
23	emb\|AL049714.6\|HSJ181J22 Human DNA sequence from clone RP1-181J2...	40	7.0
24	emb\|AJ833975.1\| Pseudomonas aeruginosa partial alkB1 gene for pu...	40	7.0
25	emb\|BX546466.6\| Zebrafish DNA sequence from clone DKEY-43N10 in ...	40	7.0
26	emb\|AJ633620.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
27	emb\|AJ633619.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
28	emb\|AJ633618.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
29	emb\|AJ633617.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
30	emb\|AJ633616.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
31	emb\|AJ633615.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
32	emb\|AJ633614.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
33	emb\|AJ633613.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
34	emb\|AJ633612.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
35	emb\|AJ633611.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
36	emb\|AJ633610.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
37	emb\|AJ633609.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
38	emb\|AJ633608.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
39	emb\|AJ633607.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
40	emb\|AJ633606.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
41	emb\|AJ633605.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
42	emb\|AJ633604.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
43	emb\|AJ633603.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
44	emb\|AJ633602.1\| Pseudomonas aeruginosa alkB2 gene for alkane hyd...	40	7.0
45	gb\|AE004581.1\| Pseudomonas aeruginosa PAO1, section 142 of 529 o...	40	7.0
46	gb\|AC163632.3\| Mus musculus BAC clone RP23-339H2 from chromosome...	40	7.0
47	emb\|AJ311787.1\|PSP311787 Pseudomonas sp. A4 partial gene sequenc...	40	7.0
48	emb\|AJ344088.1\|PAE344088 Pseudomonas aeruginosa partial alkB2 ge...	40	7.0
49	emb\|AJ344085.1\|PAE344085 Pseudomonas aeruginosa partial alkB2 ge...	40	7.0
50	emb\|AJ344081.1\|PAE344081 Pseudomonas aeruginosa partial alkB2 ge...	40	7.0

>ref|XM_483828.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4423

 Score =  165 bits (83), Expect = 2e-37
 Identities = 170/199 (85%)
 Strand = Plus / Plus

                                                                       
Query: 35  ctctgcagaagcatctgccagtatcagggccagagggaccgaacgaacttgaaaaaatcg 94
           ||||| |||||||||| |||||||||| ||| |||||   ||| |||||| |||| || |
Sbjct: 310 ctctgaagaagcatctaccagtatcagtgcctgaggggttgaatgaacttcaaaagatag 369

                                                                       
Query: 95  ctgtgcgattcgaagagaagatctataatgcagcgaccagccagtctgattatttgcgga 154
           | |||||||| |||||||| ||||||| |||||| ||||||||||||||||| |||||||
Sbjct: 370 cagtgcgatttgaagagaaaatctatactgcagccaccagccagtctgattacttgcgga 429

                                                                       
Query: 155 agatttctctgaaaatgctatctatggagacgaagacataacaggctcctggaaatgctc 214
           |||||||||| |||||||| ||||||||||| |||||  |||||  ||||||||| || |
Sbjct: 430 agatttctctaaaaatgctctctatggagacaaagactcaacagaatcctggaaacgccc 489

                              
Query: 215 aggtgattccaaatcaaaa 233
           | ||||||| ||| |||||
Sbjct: 490 aagtgattcaaaaccaaaa 508

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>dbj|AK071244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088K02, full
           insert sequence
          Length = 4423

 Score =  165 bits (83), Expect = 2e-37
 Identities = 170/199 (85%)
 Strand = Plus / Plus

                                                                       
Query: 35  ctctgcagaagcatctgccagtatcagggccagagggaccgaacgaacttgaaaaaatcg 94
           ||||| |||||||||| |||||||||| ||| |||||   ||| |||||| |||| || |
Sbjct: 310 ctctgaagaagcatctaccagtatcagtgcctgaggggttgaatgaacttcaaaagatag 369

                                                                       
Query: 95  ctgtgcgattcgaagagaagatctataatgcagcgaccagccagtctgattatttgcgga 154
           | |||||||| |||||||| ||||||| |||||| ||||||||||||||||| |||||||
Sbjct: 370 cagtgcgatttgaagagaaaatctatactgcagccaccagccagtctgattacttgcgga 429

                                                                       
Query: 155 agatttctctgaaaatgctatctatggagacgaagacataacaggctcctggaaatgctc 214
           |||||||||| |||||||| ||||||||||| |||||  |||||  ||||||||| || |
Sbjct: 430 agatttctctaaaaatgctctctatggagacaaagactcaacagaatcctggaaacgccc 489

                              
Query: 215 aggtgattccaaatcaaaa 233
           | ||||||| ||| |||||
Sbjct: 490 aagtgattcaaaaccaaaa 508

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>ref|XM_483401.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 490

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Plus

                                                                       
Query: 52  ccagtatcagggccagagggaccgaacgaacttgaaaaaatcgctgtgcgattcgaagag 111
           |||||||||||||| ||||| | ||| |||||| ||||  | || |||||||| ||||||
Sbjct: 3   ccagtatcagggcctgaggggctgaatgaacttcaaaagttagcagtgcgatttgaagag 62

                                                                       
Query: 112 aagatctataatgcagcgaccagccagtctgattatttgcggaagatttctctgaaaatg 171
           || ||||||| || ||| ||||||| ||||||||| ||||||||| | ||||| ||||||
Sbjct: 63  aaaatctatactggagccaccagccggtctgattacttgcggaagttgtctctaaaaatg 122

                                                                       
Query: 172 ctatctatggagacgaagacataacaggctcctggaaatgctcaggtgattccaaatcaa 231
           || ||| ||||||| |||||  |||||  ||||||||| || || ||||||| ||| |||
Sbjct: 123 ctctctttggagacaaagactcaacagagtcctggaaacgcccaagtgattcaaaaccaa 182

             
Query: 232 aa 233
           ||
Sbjct: 183 aa 184

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>dbj|AK063901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-H05, full
           insert sequence
          Length = 490

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Plus

                                                                       
Query: 52  ccagtatcagggccagagggaccgaacgaacttgaaaaaatcgctgtgcgattcgaagag 111
           |||||||||||||| ||||| | ||| |||||| ||||  | || |||||||| ||||||
Sbjct: 3   ccagtatcagggcctgaggggctgaatgaacttcaaaagttagcagtgcgatttgaagag 62

                                                                       
Query: 112 aagatctataatgcagcgaccagccagtctgattatttgcggaagatttctctgaaaatg 171
           || ||||||| || ||| ||||||| ||||||||| ||||||||| | ||||| ||||||
Sbjct: 63  aaaatctatactggagccaccagccggtctgattacttgcggaagttgtctctaaaaatg 122

                                                                       
Query: 172 ctatctatggagacgaagacataacaggctcctggaaatgctcaggtgattccaaatcaa 231
           || ||| ||||||| |||||  |||||  ||||||||| || || ||||||| ||| |||
Sbjct: 123 ctctctttggagacaaagactcaacagagtcctggaaacgcccaagtgattcaaaaccaa 182

             
Query: 232 aa 233
           ||
Sbjct: 183 aa 184

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                            
Query: 135      ccagtctgattatttgcggaagatttctctgaaaatgctatctatggagacgaagacata 194
                |||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||  |
Sbjct: 28296033 ccagtctgattacttgcggaagatttctctaaaaatgctctctatggagacaaagactca 28295974

                                                       
Query: 195      acaggctcctggaaatgctcaggtgattccaaatcaaaa 233
                ||||  ||||||||| || || ||||||| ||| |||||
Sbjct: 28295973 acagaatcctggaaacgcccaagtgattcaaaaccaaaa 28295935



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 86/102 (84%)
 Strand = Plus / Plus

                                                                            
Query: 35       ctctgcagaagcatctgccagtatcagggccagagggaccgaacgaacttgaaaaaatcg 94
                ||||| |||||||||| |||||||||||||| ||||| | ||| |||||| ||||  | |
Sbjct: 26018754 ctctgaagaagcatctaccagtatcagggcctgaggggctgaatgaacttcaaaagttag 26018813

                                                          
Query: 95       ctgtgcgattcgaagagaagatctataatgcagcgaccagcc 136
                | |||||||| |||||||| ||||||| || ||| |||||||
Sbjct: 26018814 cagtgcgatttgaagagaaaatctatactggagccaccagcc 26018855



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                            
Query: 135      ccagtctgattatttgcggaagatttctctgaaaatgctatctatggagacgaagacata 194
                |||||||||||| ||||||||| | ||||| |||||||| ||| ||||||| |||||  |
Sbjct: 26019692 ccagtctgattacttgcggaagttgtctctaaaaatgctctctttggagacaaagactca 26019751

                                                       
Query: 195      acaggctcctggaaatgctcaggtgattccaaatcaaaa 233
                ||||  ||||||||| || || ||||||| ||| |||||
Sbjct: 26019752 acagagtcctggaaacgcccaagtgattcaaaaccaaaa 26019790

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>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0044E16
          Length = 153296

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                         
Query: 135   ccagtctgattatttgcggaagatttctctgaaaatgctatctatggagacgaagacata 194
             |||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||  |
Sbjct: 24839 ccagtctgattacttgcggaagatttctctaaaaatgctctctatggagacaaagactca 24780

                                                    
Query: 195   acaggctcctggaaatgctcaggtgattccaaatcaaaa 233
             ||||  ||||||||| || || ||||||| ||| |||||
Sbjct: 24779 acagaatcctggaaacgcccaagtgattcaaaaccaaaa 24741

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>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0705A05
          Length = 143765

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                         
Query: 135   ccagtctgattatttgcggaagatttctctgaaaatgctatctatggagacgaagacata 194
             |||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||  |
Sbjct: 87848 ccagtctgattacttgcggaagatttctctaaaaatgctctctatggagacaaagactca 87789

                                                    
Query: 195   acaggctcctggaaatgctcaggtgattccaaatcaaaa 233
             ||||  ||||||||| || || ||||||| ||| |||||
Sbjct: 87788 acagaatcctggaaacgcccaagtgattcaaaaccaaaa 87750

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>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1186_G01
          Length = 112077

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 86/102 (84%)
 Strand = Plus / Plus

                                                                         
Query: 35    ctctgcagaagcatctgccagtatcagggccagagggaccgaacgaacttgaaaaaatcg 94
             ||||| |||||||||| |||||||||||||| ||||| | ||| |||||| ||||  | |
Sbjct: 54315 ctctgaagaagcatctaccagtatcagggcctgaggggctgaatgaacttcaaaagttag 54374

                                                       
Query: 95    ctgtgcgattcgaagagaagatctataatgcagcgaccagcc 136
             | |||||||| |||||||| ||||||| || ||| |||||||
Sbjct: 54375 cagtgcgatttgaagagaaaatctatactggagccaccagcc 54416



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                         
Query: 135   ccagtctgattatttgcggaagatttctctgaaaatgctatctatggagacgaagacata 194
             |||||||||||| ||||||||| | ||||| |||||||| ||| ||||||| |||||  |
Sbjct: 55253 ccagtctgattacttgcggaagttgtctctaaaaatgctctctttggagacaaagactca 55312

                                                    
Query: 195   acaggctcctggaaatgctcaggtgattccaaatcaaaa 233
             ||||  ||||||||| || || ||||||| ||| |||||
Sbjct: 55313 acagagtcctggaaacgcccaagtgattcaaaaccaaaa 55351

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>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1081_B12
          Length = 124741

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 86/102 (84%)
 Strand = Plus / Plus

                                                                          
Query: 35     ctctgcagaagcatctgccagtatcagggccagagggaccgaacgaacttgaaaaaatcg 94
              ||||| |||||||||| |||||||||||||| ||||| | ||| |||||| ||||  | |
Sbjct: 103631 ctctgaagaagcatctaccagtatcagggcctgaggggctgaatgaacttcaaaagttag 103690

                                                        
Query: 95     ctgtgcgattcgaagagaagatctataatgcagcgaccagcc 136
              | |||||||| |||||||| ||||||| || ||| |||||||
Sbjct: 103691 cagtgcgatttgaagagaaaatctatactggagccaccagcc 103732



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                          
Query: 135    ccagtctgattatttgcggaagatttctctgaaaatgctatctatggagacgaagacata 194
              |||||||||||| ||||||||| | ||||| |||||||| ||| ||||||| |||||  |
Sbjct: 104569 ccagtctgattacttgcggaagttgtctctaaaaatgctctctttggagacaaagactca 104628

                                                     
Query: 195    acaggctcctggaaatgctcaggtgattccaaatcaaaa 233
              ||||  ||||||||| || || ||||||| ||| |||||
Sbjct: 104629 acagagtcctggaaacgcccaagtgattcaaaaccaaaa 104667

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>gb|AC024796.1| Caenorhabditis elegans cosmid Y48G1C, complete sequence
          Length = 60391

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 147   tttgcggaagatttctctgaaaa 169
             |||||||||||||||||||||||
Sbjct: 35112 tttgcggaagatttctctgaaaa 35090

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>gb|AC091652.4| Homo sapiens BAC clone RP11-26I6 from 7, complete sequence
          Length = 44121

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 194   aacaggctcctggaaatgctca 215
             ||||||||||||||||||||||
Sbjct: 14228 aacaggctcctggaaatgctca 14207

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>emb|AJ342773.1|HSA342773 Homo sapiens genomic sequence surrounding NotI site, clone NL6-AG9C
          Length = 722

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 194 aacaggctcctggaaatgctca 215
           ||||||||||||||||||||||
Sbjct: 377 aacaggctcctggaaatgctca 356

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>emb|AJ343409.1|HSA343409 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NA4C
          Length = 610

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 194 aacaggctcctggaaatgctca 215
           ||||||||||||||||||||||
Sbjct: 377 aacaggctcctggaaatgctca 356

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>emb|AJ343381.1|HSA343381 Homo sapiens genomic sequence surrounding NotI site, clone NL6-HP7R
          Length = 496

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 194 aacaggctcctggaaatgctca 215
           ||||||||||||||||||||||
Sbjct: 377 aacaggctcctggaaatgctca 356

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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 206     gaaatgctcaggtgattccaaatca 230
               |||||||||| ||||||||||||||
Sbjct: 3867682 gaaatgctcaagtgattccaaatca 3867706

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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 206     gaaatgctcaggtgattccaaatca 230
               |||||||||| ||||||||||||||
Sbjct: 4231667 gaaatgctcaagtgattccaaatca 4231691

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>gb|AE008632.1| Rickettsia conorii str. Malish 7, section 64 of 114 of the complete
            genome
          Length = 11428

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                        
Query: 146  atttgcggaagatttctctgaaaatgct 173
            ||||||||||||||||||| ||||||||
Sbjct: 4586 atttgcggaagatttctct-aaaatgct 4560

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>gb|AY452488.1| Pseudomonas frederiksbergensis alkane hydroxylase (alkB) and
           alcoholdehydrogenase (alkJ) genes, complete cds; and
           putative flavin-binding monooxygenase gene, partial cds
          Length = 2894

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 461 aggaagttgtgcttgtaggc 442

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>emb|AL731545.4| Human DNA sequence from clone RP11-431F18 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 24239

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   tggaatttctgtattgacca 485
             ||||||||||||||||||||
Sbjct: 15518 tggaatttctgtattgacca 15537

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>emb|AL591206.9| Human DNA sequence from clone RP11-151J10 on chromosome 9 Contains the 5'
              end of a novel gene (FLJ20060) (contains FLJ12902,
              KIAA1574), the ADFP gene for adipose
              differentiation-related protein (ADRP) and 2 CpG islands,
              complete sequence
          Length = 130713

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    atttttgtgatactgagttc 282
              ||||||||||||||||||||
Sbjct: 109809 atttttgtgatactgagttc 109828

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>emb|AL590290.5| Human DNA sequence from clone RP11-228O6 on chromosome 6, complete
             sequence
          Length = 114653

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   aacccaatgatttttgtgat 273
             ||||||||||||||||||||
Sbjct: 20184 aacccaatgatttttgtgat 20203

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>emb|AL391809.21| Human DNA sequence from clone RP11-47A4 on chromosome 1 Contains the
            5' end of the RYR2 gene for ryanodine receptor 2
            (cardiac) and three CpG islands, complete sequence
          Length = 167548

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 494  agctttgaatgatcctgggg 513
            ||||||||||||||||||||
Sbjct: 9490 agctttgaatgatcctgggg 9509

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>emb|AL049714.6|HSJ181J22 Human DNA sequence from clone RP1-181J22 on chromosome 11p13 Contains
             an RPL34 (60S Ribosomal protein L34) pseudogene, ESTs and
             GSSs, complete sequence
          Length = 55316

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   attccaaatcaaaacaaccc 239
             ||||||||||||||||||||
Sbjct: 40806 attccaaatcaaaacaaccc 40825

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>emb|AJ833975.1| Pseudomonas aeruginosa partial alkB1 gene for putative alkane
           hydroxylase, strain GL1 CIP104590
          Length = 294

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 94  aggaagttgtgcttgtaggc 75

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>emb|BX546466.6| Zebrafish DNA sequence from clone DKEY-43N10 in linkage group 23,
             complete sequence
          Length = 109069

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 239   cctgtcaagatgcataacccaatg 262
             |||||||||||||| |||||||||
Sbjct: 22463 cctgtcaagatgcaaaacccaatg 22440

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>emb|AJ633620.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           CHA
          Length = 1383

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 771 aggaagttgtgcttgtaggc 752

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>emb|AJ633619.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           ATCC15524
          Length = 1360

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 760 aggaagttgtgcttgtaggc 741

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>emb|AJ633618.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           CECT119
          Length = 1405

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 793 aggaagttgtgcttgtaggc 774

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>emb|AJ633617.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           19G12
          Length = 1372

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 772 aggaagttgtgcttgtaggc 753

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>emb|AJ633616.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           PAK
          Length = 1404

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 793 aggaagttgtgcttgtaggc 774

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>emb|AJ633615.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           ATCC33818
          Length = 1308

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 696 aggaagttgtgcttgtaggc 677

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>emb|AJ633614.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           ATCC33356
          Length = 1361

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 760 aggaagttgtgcttgtaggc 741

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>emb|AJ633613.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           ATCC15691
          Length = 1421

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 772 aggaagttgtgcttgtaggc 753

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>emb|AJ633612.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           ATCC10145
          Length = 1390

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 793 aggaagttgtgcttgtaggc 774

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>emb|AJ633611.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           SG31
          Length = 1372

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 771 aggaagttgtgcttgtaggc 752

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>emb|AJ633610.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           63741
          Length = 1427

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 799 aggaagttgtgcttgtaggc 780

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>emb|AJ633609.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           HJ2
          Length = 1383

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 771 aggaagttgtgcttgtaggc 752

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>emb|AJ633608.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain DM
          Length = 1353

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 771 aggaagttgtgcttgtaggc 752

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>emb|AJ633607.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           DSM1128
          Length = 1435

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 811 aggaagttgtgcttgtaggc 792

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>emb|AJ633606.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain G7
          Length = 1409

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 760 aggaagttgtgcttgtaggc 741

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>emb|AJ633605.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           892
          Length = 1431

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 788 aggaagttgtgcttgtaggc 769

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>emb|AJ633604.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           SG1
          Length = 1430

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 787 aggaagttgtgcttgtaggc 768

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>emb|AJ633603.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain K9
          Length = 1383

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 772 aggaagttgtgcttgtaggc 753

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>emb|AJ633602.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain
           RR1
          Length = 1134

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 611 aggaagttgtgcttgtaggc 592

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>gb|AE004581.1| Pseudomonas aeruginosa PAO1, section 142 of 529 of the complete
           genome
          Length = 13203

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 664 aggaagttgtgcttgtaggc 683

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>gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome 16, complete sequence
          Length = 190341

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   attccaaatcaaaacaaccc 239
             ||||||||||||||||||||
Sbjct: 72009 attccaaatcaaaacaaccc 71990

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>emb|AJ311787.1|PSP311787 Pseudomonas sp. A4 partial gene sequence for putative alkane
           hydroxylase
          Length = 504

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 182 aggaagttgtgcttgtaggc 163

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>emb|AJ344088.1|PAE344088 Pseudomonas aeruginosa partial alkB2 gene for putative
           alkane-1-monooxygenase, isolate PAO1
          Length = 724

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 461 aggaagttgtgcttgtaggc 442

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>emb|AJ344085.1|PAE344085 Pseudomonas aeruginosa partial alkB2 gene for putative
           alkane-1-monooxygenase, isolate UMI-97
          Length = 724

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 461 aggaagttgtgcttgtaggc 442

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>emb|AJ344081.1|PAE344081 Pseudomonas aeruginosa partial alkB2 gene for putative
           alkane-1-hydroxylase, isolate UMI-88
          Length = 724

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 aggaagttgtgcttgtaggc 402
           ||||||||||||||||||||
Sbjct: 461 aggaagttgtgcttgtaggc 442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,259,415
Number of Sequences: 3902068
Number of extensions: 4259415
Number of successful extensions: 131525
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 131403
Number of HSP's gapped (non-prelim): 123
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result