ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9a22 |
|---|---|
| Clone Library Name | barley_pub |
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 43.5 bits (101), Expect(2) = 2e-08 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 6/145 (4%) Frame = +1 Query: 25 TDGQSERVNKCLEMYLMCAVRDSPTK*HNWLALAEFWYNTSHHSSLGCSPFKALYDQCRR 204 TDGQ+ER N+ +E L C P + ++L + YN + HS+ +PF+ ++ Sbjct: 1081 TDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH----- 1135 Query: 205 WGSFSEYLMMLHL--MCNSGCKTHKHTLKLSNTICKEPKQ---KIKADAD-KYRPPREFS 366 +S L L L + + + T+++ T+ + K+K D K + EF Sbjct: 1136 --RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQ 1193 Query: 367 VGELVFLKLQPYGQYP*STDLVPSW 441 G+LV +K G S L PS+ Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPSF 1218 Score = 34.7 bits (78), Expect(2) = 2e-08 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 435 KLAFKYFGPFQILEKIGPAAYKLDLP 512 KLA + GPF +L+K GP Y+LDLP Sbjct: 1213 KLAPSFAGPFYVLQKSGPNNYELDLP 1238
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 43.5 bits (101), Expect(2) = 2e-08 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 6/145 (4%) Frame = +1 Query: 25 TDGQSERVNKCLEMYLMCAVRDSPTK*HNWLALAEFWYNTSHHSSLGCSPFKALYDQCRR 204 TDGQ+ER N+ +E L C P + ++L + YN + HS+ +PF+ ++ Sbjct: 1081 TDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH----- 1135 Query: 205 WGSFSEYLMMLHL--MCNSGCKTHKHTLKLSNTICKEPKQ---KIKADAD-KYRPPREFS 366 +S L L L + + + T+++ T+ + K+K D K + EF Sbjct: 1136 --RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQ 1193 Query: 367 VGELVFLKLQPYGQYP*STDLVPSW 441 G+LV +K G S L PS+ Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPSF 1218 Score = 34.7 bits (78), Expect(2) = 2e-08 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 435 KLAFKYFGPFQILEKIGPAAYKLDLP 512 KLA + GPF +L+K GP Y+LDLP Sbjct: 1213 KLAPSFAGPFYVLQKSGPNNYELDLP 1238
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 43.5 bits (101), Expect(2) = 2e-08 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 6/145 (4%) Frame = +1 Query: 25 TDGQSERVNKCLEMYLMCAVRDSPTK*HNWLALAEFWYNTSHHSSLGCSPFKALYDQCRR 204 TDGQ+ER N+ +E L C P + ++L + YN + HS+ +PF+ ++ Sbjct: 1081 TDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH----- 1135 Query: 205 WGSFSEYLMMLHL--MCNSGCKTHKHTLKLSNTICKEPKQ---KIKADAD-KYRPPREFS 366 +S L L L + + + T+++ T+ + K+K D K + EF Sbjct: 1136 --RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQ 1193 Query: 367 VGELVFLKLQPYGQYP*STDLVPSW 441 G+LV +K G S L PS+ Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPSF 1218 Score = 34.7 bits (78), Expect(2) = 2e-08 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 435 KLAFKYFGPFQILEKIGPAAYKLDLP 512 KLA + GPF +L+K GP Y+LDLP Sbjct: 1213 KLAPSFAGPFYVLQKSGPNNYELDLP 1238
>MTB_STRPU (Q27287) Metallothionein-B (MTB)| Length = 65 Score = 35.0 bits (79), Expect = 0.19 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = -2 Query: 346 CICQHQP*FSVWALCK---WCLRVSECACVSCSHCCTSGEASSGTLRNCP 206 C C Q ++ CK C + S AC +C+ CT G S T NCP Sbjct: 15 CACTGQDCCTIGKCCKDGTCCGKCSNAACKTCADGCTCGSGCSCTEGNCP 64
>Y3178_CAUCR (P58114) Hypothetical protein CC3178| Length = 288 Score = 34.7 bits (78), Expect = 0.24 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 417 INRPCPKLAFKYFGPFQILEKIGPAAYKLDLPAEAQIHPVP 539 + R P A + GPF L+ +GPAA++ P A + P P Sbjct: 18 VGRVLPFHAHRMVGPFTFLDHMGPAAFQPGFPKSADVRPHP 58
>LIPA_PSEPK (Q88DM5) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 338 Score = 33.5 bits (75), Expect = 0.54 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 14/104 (13%) Frame = -2 Query: 457 PKYLKASLGQGLLIKDIVHKVEVSEIPT--LPQKTPWVVCICQHQP*FSVWALCKWCLR- 287 P K G L D V ++ V IPT LP+K W+ P K LR Sbjct: 21 PAPKKVEAGVKLRGADKVARIPVKIIPTDELPKKPDWIRVRIPVSPEVD---RIKQLLRK 77 Query: 286 ------VSECACVSCSHCCTSGEASSGTL-----RNCPICDIGH 188 E +C + C + G A+ + R CP CD+GH Sbjct: 78 HKLHSVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGH 121
>YBFG_ECOLI (P37003) Hypothetical protein ybfG| Length = 216 Score = 33.5 bits (75), Expect = 0.54 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 195 MSQMGQFLRVPDDASPDVQQWLQDTQAHSETLKHHLQRAQT 317 M +M Q + D A P +Q WL+D H+E L + A+T Sbjct: 1 MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKDLAET 41
>ZCHC4_HUMAN (Q9H5U6) Zinc finger CCHC domain-containing protein 4| Length = 513 Score = 33.1 bits (74), Expect = 0.70 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = -2 Query: 307 LCKWCLRVSECACVSCSHCCTSGEASSGTLRNCPIC 200 LCK C++ S C C+HC + G C IC Sbjct: 413 LCKKCVKPSWIHCSICNHCAVPDHSCEGPKHGCFIC 448
>LIPA_PSEAE (Q9HX25) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 327 Score = 32.3 bits (72), Expect = 1.2 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Frame = -2 Query: 445 KASLGQGLLIKDIVHKVEVSEIPT--LPQKTPWVVCICQHQP*FSVWALCKWCLR----- 287 K +G L + V ++ V IPT LP+K W+ P K LR Sbjct: 15 KVEVGVKLRGAEKVARIPVKIIPTEELPKKPDWIRVRIPVSPEVD---RIKQLLRKHKLH 71 Query: 286 --VSECACVSCSHCCTSGEASSGTL-----RNCPICDIGH 188 E +C + C + G A+ + R CP CD+GH Sbjct: 72 SVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGH 111
>LIPA_PSESM (Q87VW7) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 318 Score = 31.6 bits (70), Expect = 2.0 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 14/100 (14%) Frame = -2 Query: 445 KASLGQGLLIKDIVHKVEVSEIPT--LPQKTPWVVCICQHQP*FSVWALCKWCLR----- 287 K G L + V ++ V IPT LP+K W+ P K LR Sbjct: 5 KVEAGVKLRGAEKVARIPVKIIPTVDLPKKPDWIRVRIPVSPEVD---RIKQLLRKHKLH 61 Query: 286 --VSECACVSCSHCCTSGEASSGTL-----RNCPICDIGH 188 E +C + C + G A+ + R CP CD+GH Sbjct: 62 SVCEEASCPNLGECFSGGTATFMIMGDICTRRCPFCDVGH 101
>ZN407_HUMAN (Q9C0G0) Zinc finger protein 407 (Fragment)| Length = 1165 Score = 31.2 bits (69), Expect = 2.7 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -2 Query: 304 CKWCLRVSECACVSCSHCCTSGEASSGTLRNCPICDIG 191 C WC S CA H +G+ + NCP CD G Sbjct: 661 CPWCDYRSNCAENIRKHILHTGKHEGVKMYNCPKCDYG 698
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from transposon 412| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1237 Score = 26.2 bits (56), Expect(2) = 3.3 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 9/131 (6%) Frame = +1 Query: 25 TDGQSERVNKCLEMYLMCAVRDSPTK*HNWLALAEFWYNTSHHSSLGCSPFKALYDQCRR 204 T G ER ++ L Y+ + T WL + +NT+ P++ ++ R Sbjct: 1062 TVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFG---R 1118 Query: 205 WGSFSEYLMMLHLM-----CNSGCKTHKHTLKL----SNTICKEPKQKIKADADKYRPPR 357 + ++ LH + + K K+ L++ + + + K+K K + D Sbjct: 1119 TSNLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDI 1178 Query: 358 EFSVGELVFLK 390 E VG+ V L+ Sbjct: 1179 ELEVGDKVLLR 1189 Score = 23.1 bits (48), Expect(2) = 3.3 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 408 ISLINRPCPKLAFKYFGPFQILEKIG 485 + L N KL FKY GP++I E IG Sbjct: 1186 VLLRNEVGHKLDFKYTGPYKI-ESIG 1210
>ATRN_RAT (Q99J86) Attractin precursor (Zitter protein)| Length = 1432 Score = 30.8 bits (68), Expect = 3.5 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = -2 Query: 304 CKWCLRVSECACVSCSHCCTSGEASSGTLRNCP 206 C WC CV +H CT G+ S NCP Sbjct: 723 CHWC----NDHCVPVNHSCTEGQISIAKYDNCP 751
>CITG_STRP8 (Q8P102) Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A| synthase (EC 2.7.8.25) (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase) Length = 294 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 238 HLMCNSGCKTHKHTLKLSNTICKEPKQKIKADADKYRPPREFSVGELVFL 387 HLM + GC + + TL + + I+AD +EF+ GE +F+ Sbjct: 123 HLMTDLGCFSKEDTLAICRLVKPMTAHLIQADLGHLNTKKEFTYGEQLFV 172
>CITG_STRP6 (Q5XC41) Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A| synthase (EC 2.7.8.25) (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase) Length = 294 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 238 HLMCNSGCKTHKHTLKLSNTICKEPKQKIKADADKYRPPREFSVGELVFL 387 HLM + GC + + TL + + I+AD +EF+ GE +F+ Sbjct: 123 HLMTDLGCFSKEDTLAICRLVKPMTAHLIQADLGHLNTKKEFTYGEQLFV 172
>APBP2_MOUSE (Q9DAX9) Amyloid protein-binding protein 2 (Amyloid beta precursor| protein-binding protein 2) (APP-BP2) Length = 585 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +1 Query: 133 WYNTSHHSSLGCSPFKALYDQCRRWGSFSEYLMMLHLMCNSGCKTH--KHTLKLSNT 297 WY+ + L C L+D+ W E + L + N CK H + T KL+ T Sbjct: 135 WYSDAEKVFLSCLQLCTLHDEMLHWFRAVECCVRLLHVRNGNCKYHLGEETFKLAQT 191
>APBP2_HUMAN (Q92624) Amyloid protein-binding protein 2 (Amyloid beta precursor| protein-binding protein 2) (APP-BP2) (Protein interacting with APP tail 1) Length = 585 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +1 Query: 133 WYNTSHHSSLGCSPFKALYDQCRRWGSFSEYLMMLHLMCNSGCKTH--KHTLKLSNT 297 WY+ + L C L+D+ W E + L + N CK H + T KL+ T Sbjct: 135 WYSDAEKVFLSCLQLCTLHDEMLHWFRAVECCVRLLHVRNGNCKYHLGEETFKLAQT 191
>HDGR3_RAT (Q923W4) Hepatoma-derived growth factor-related protein 3 (HRP-3)| Length = 202 Score = 30.0 bits (66), Expect = 6.0 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 352 PREFSVGELVFLKLQPYGQYP*STDLVP 435 PRE+ G+LVF K++ Y +P D +P Sbjct: 6 PREYKAGDLVFAKMKGYPHWPARIDELP 33
>HDGR3_MOUSE (Q9JMG7) Hepatoma-derived growth factor-related protein 3 (HRP-3)| Length = 202 Score = 30.0 bits (66), Expect = 6.0 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 352 PREFSVGELVFLKLQPYGQYP*STDLVP 435 PRE+ G+LVF K++ Y +P D +P Sbjct: 6 PREYKAGDLVFAKMKGYPHWPARIDELP 33
>HDGR3_HUMAN (Q9Y3E1) Hepatoma-derived growth factor-related protein 3 (HRP-3)| (Hepatoma-derived growth factor 2) Length = 203 Score = 30.0 bits (66), Expect = 6.0 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 352 PREFSVGELVFLKLQPYGQYP*STDLVP 435 PRE+ G+LVF K++ Y +P D +P Sbjct: 6 PREYKAGDLVFAKMKGYPHWPARIDELP 33
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 29.6 bits (65), Expect = 7.8 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 331 DADKYRPPREFSVGELVFLKLQPYGQYP*STDLVPSWPSNILAPFRSWRRLVQ 489 D+ +Y+ +EF +G+LV+ K++ + +P +V SW + S R VQ Sbjct: 213 DSSEYQDGKEFGIGDLVWGKIKGFSWWP---AMVVSWKATSKRQAMSGMRWVQ 262
>LEU3B_ASPNG (P87257) 3-isopropylmalate dehydrogenase B (EC 1.1.1.85) (Beta-IPM| dehydrogenase B) (IMDH B) (3-IPM-DH B) Length = 371 Score = 29.6 bits (65), Expect = 7.8 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%) Frame = +1 Query: 433 PSWP------SNILAPFRSWRRLVQQLTNWIYPQ 516 P WP +N+LA R WRR+V+ + YPQ Sbjct: 187 PPWPVISLDKANVLASSRLWRRVVENTISVEYPQ 220
>MT1B_HUMAN (P07438) Metallothionein-1B (MT-1B) (Metallothionein-IB) (MT-IB)| Length = 61 Score = 29.6 bits (65), Expect = 7.8 Identities = 15/51 (29%), Positives = 19/51 (37%) Frame = -2 Query: 304 CKWCLRVSECACVSCSHCCTSGEASSGTLRNCPICDIGHIKL*RGNIPKKS 152 C + EC C SC CC C C +G K +G + K S Sbjct: 15 CAGSCKCKECKCTSCKKCC------------CSCCPVGCAKCAQGCVCKGS 53
>ZCHC4_MOUSE (Q8BKW4) Zinc finger CCHC domain-containing protein 4| Length = 512 Score = 29.6 bits (65), Expect = 7.8 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -2 Query: 307 LCKWCLRVSECACVSCSHCCTSGEASSGTLRNCPICDIGHIKL*RGNIP 161 LCK C++ S C +C+ C + G C IC G + R N P Sbjct: 411 LCKKCVKPSWIHCNTCNRCALPDHSCLGPKDGCFIC--GALDHKRSNCP 457
>IPNS_STRJU (P18286) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)| (Isopenicillin N synthase) Length = 329 Score = 29.6 bits (65), Expect = 7.8 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -1 Query: 236 SIIRYSEKLPHLRHWSYKALKGEHPKEEWC 147 +I Y++ PH+R+ YKA+KG+ E +C Sbjct: 75 AINAYNKDNPHVRNGYYKAIKGKKAVESFC 104
>ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein)| Length = 1428 Score = 29.6 bits (65), Expect = 7.8 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -2 Query: 304 CKWCLRVSECACVSCSHCCTSGEASSGTLRNCP 206 C WC CV +H CT G+ S +CP Sbjct: 719 CHWC----NDHCVPVNHSCTEGQISIAKYESCP 747 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,223,486 Number of Sequences: 219361 Number of extensions: 2082191 Number of successful extensions: 6035 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5762 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6020 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
