Clone Information

BLAST Search Result

Clone Name	bags9a22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
2	dbj\|AP005730.2\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
3	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.009
4	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	50	0.009
5	emb\|AL713944.3\|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116...	50	0.009
6	ref\|XM_381856.1\| Gibberella zeae PH-1 chromosome 1 hypothetical ...	44	0.55
7	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.55
8	dbj\|AP004995.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.55
9	dbj\|AP004994.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.55
10	ref\|XM_507167.1\| PREDICTED Oryza sativa (japonica cultivar-group...	42	2.2
11	ref\|XM_580650.2\| PREDICTED: Bos taurus similar to Adenylate kina...	42	2.2
12	emb\|AL606760.9\| Human DNA sequence from clone RP5-1024G6 on chro...	42	2.2
13	emb\|AL021940.1\|HS117P20 Human DNA sequence from clone RP1-117P20...	42	2.2
14	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
15	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
16	dbj\|AP004670.4\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
17	dbj\|AP003537.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
18	dbj\|AP003843.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
19	dbj\|AP005494.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
20	dbj\|AP004649.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
21	dbj\|AK064592.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
22	gb\|DQ219841.1\| Tetrahymena thermophila Apm1Ap (APM1A) gene, comp...	42	2.2
23	gb\|M87298.1\|CHKNPYA1 Chicken neuropeptide Y gene, exons 1-3	42	2.2
24	gb\|AC147806.5\| Mus musculus chromosome 1, clone RP23-6O16, compl...	40	8.6
25	gb\|AC133103.5\| Mus musculus BAC clone RP23-226J10 from chromosom...	40	8.6
26	gb\|AC158993.2\| Mus musculus BAC clone RP24-427N13 from chromosom...	40	8.6
27	gb\|AC125149.4\| Mus musculus BAC clone RP24-354E17 from chromosom...	40	8.6
28	gb\|AC123856.4\| Mus musculus BAC clone RP23-341H24 from chromosom...	40	8.6
29	gb\|AC115742.13\| Mus musculus chromosome 7, clone RP23-477E13, co...	40	8.6
30	emb\|CR954256.1\| Anopheles gambiae Pen-1 region; BAC clones 30N20...	40	8.6
31	emb\|AJ746250.1\| Yarrowia lipolytica retrotransposon Tyl6	40	8.6
32	gb\|AC121807.3\| Mus musculus BAC clone RP23-448N11 from chromosom...	40	8.6
33	emb\|AL589746.11\| Human DNA sequence from clone RP4-755G5 on chro...	40	8.6
34	emb\|AL513262.7\| Human DNA sequence from clone RP11-499I15 on chr...	40	8.6
35	ref\|XM_503941.1\| Yarrowia lipolytica CLIB122, YALI0E14399g predi...	40	8.6
36	emb\|AL021395.16\|HS269M15 Human DNA sequence from clone RP1-269M1...	40	8.6
37	emb\|AL929280.6\| Mouse DNA sequence from clone RP23-67M20 on chro...	40	8.6
38	gb\|AC128688.4\| Homo sapiens 3 BAC RP11-757F18 (Roswell Park Canc...	40	8.6
39	gb\|AC164162.2\| Mus musculus BAC clone RP23-253E17 from chromosom...	40	8.6
40	gb\|AC018529.12\| Homo sapiens, clone RP11-4B16, complete sequence	40	8.6
41	gb\|AC100863.2\| Homo sapiens chromosome 18, clone RP11-751H17, co...	40	8.6
42	gb\|AC055714.11\| Homo sapiens 3 BAC RP11-85P9 (Roswell Park Cance...	40	8.6
43	gb\|AC090684.6\| Homo sapiens chromosome 18, clone RP11-409K17, co...	40	8.6
44	gb\|AE009869.1\|AE009869 Pyrobaculum aerophilum strain IM2 section...	40	8.6
45	dbj\|AK163333.1\| Mus musculus 2 cells egg cDNA, RIKEN full-length...	40	8.6
46	gb\|AC026424.5\| Homo sapiens chromosome 5 clone CTD-2174D2, compl...	40	8.6
47	gb\|AC018994.7\|AC018994 Homo sapiens chromosome 18, clone RP11-61...	40	8.6
48	gb\|AC156247.2\| Xenopus tropicalis clone ISB1-181M9, complete seq...	40	8.6
49	gb\|AC010245.4\|AC010245 Homo sapiens chromosome 5 clone CTC-366B1...	40	8.6
50	gb\|AC009346.5\|AC009346 Drosophila melanogaster, chromosome 3R, r...	40	8.6
51	gb\|AC008311.3\|AC008311 Drosophila melanogaster, chromosome 3R, r...	40	8.6
52	gb\|AC008488.7\|AC008488 Homo sapiens chromosome 5 clone CTC-424O1...	40	8.6
53	gb\|AC122920.4\| Mus musculus BAC clone RP23-33J11 from chromosome...	40	8.6
54	gb\|AC133528.4\| Homo sapiens BAC clone RP11-367H1 from 2, complet...	40	8.6
55	gb\|AC068630.21\| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Can...	40	8.6
56	dbj\|AP005471.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
57	gb\|AC005386.1\|AC005386 citb_57_l_21, complete sequence	40	8.6
58	emb\|CT737308.2\| Pan troglodytes chromosome X clone CH251-63C08 m...	40	8.6
59	gb\|AE003602.4\| Drosophila melanogaster chromosome 3R, section 6 ...	40	8.6
60	gb\|BC099598.1\| Mus musculus similar to Sp110 nuclear body protei...	40	8.6
61	gb\|AC140241.3\| Mus musculus BAC clone RP23-283I15 from chromosom...	40	8.6
62	dbj\|AK115381.1\| Ciona intestinalis cDNA, clone:cieg048k02, full ...	40	8.6
63	gb\|AC132444.3\| Mus musculus BAC clone RP23-160D6 from 8, complet...	40	8.6
64	gb\|AC131696.4\| Mus musculus BAC clone RP23-403E5 from 1, complet...	40	8.6
65	gb\|AC150034.2\| Mus musculus BAC clone RP23-428H16 from 16, compl...	40	8.6
66	emb\|CR382131.1\| Yarrowia lipolytica chromosome E of strain CLIB ...	40	8.6
67	dbj\|AP004577.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	8.6
68	gb\|AC168977.6\| Mus musculus chromosome 1, clone RP23-285N8, comp...	40	8.6
69	emb\|AL671916.5\| Mouse DNA sequence from clone RP23-294O1 on chro...	40	8.6
70	gb\|AC163715.5\| Mus musculus BAC clone RP23-367H6 from chromosome...	40	8.6
71	emb\|X79506.1\|CTCP1CT2 C.tentans Cp1 (SINE transposable element),...	40	8.6

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                             
Query: 434     caagctggccttcaaatattttggcccctttcagatcttggagaag 479
               ||||||||| |||||||||||||| || ||||| ||| ||||||||
Sbjct: 1297857 caagctggctttcaaatattttggaccatttcaaatcctggagaag 1297812



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 124     gcagagttctggtacaataca 144
               |||||||||||||||||||||
Sbjct: 6427233 gcagagttctggtacaataca 6427213

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>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0073J19
          Length = 165174

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                            
Query: 434    caagctggccttcaaatattttggcccctttcagatcttggagaag 479
              ||||||||| |||||||||||||| || ||||| ||| ||||||||
Sbjct: 127164 caagctggctttcaaatattttggaccatttcaaatcctggagaag 127119

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 450      tattttggcccctttcagatcttgg 474
                |||||||||||||||||||||||||
Sbjct: 20173772 tattttggcccctttcagatcttgg 20173796

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 450      tattttggcccctttcagatcttgg 474
                |||||||||||||||||||||||||
Sbjct: 20099986 tattttggcccctttcagatcttgg 20100010

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>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152862

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 450   tattttggcccctttcagatcttgg 474
             |||||||||||||||||||||||||
Sbjct: 38006 tattttggcccctttcagatcttgg 38030

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>ref|XM_381856.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01680.1)
            partial mRNA
          Length = 4950

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 454  ttggcccctttcagatcttgga 475
            ||||||||||||||||||||||
Sbjct: 2555 ttggcccctttcagatcttgga 2534

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 38      cagaaagggtgaacaaatgtcttgaaatgtatct 71
               |||||||||||||| |||| |||||||| |||||
Sbjct: 7211246 cagaaagggtgaaccaatgccttgaaatttatct 7211279



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 53       aatgtcttgaaatgtatctcatgtgtgc 80
                |||| |||||||||||||||| ||||||
Sbjct: 21720613 aatgccttgaaatgtatctcaggtgtgc 21720586

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>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0068B06
          Length = 143712

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 38    cagaaagggtgaacaaatgtcttgaaatgtatct 71
             |||||||||||||| |||| |||||||| |||||
Sbjct: 88657 cagaaagggtgaaccaatgccttgaaatttatct 88690

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>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0052G07
          Length = 156207

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 38    cagaaagggtgaacaaatgtcttgaaatgtatct 71
             |||||||||||||| |||| |||||||| |||||
Sbjct: 46250 cagaaagggtgaaccaatgccttgaaatttatct 46283

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>ref|XM_507167.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1465_C11.24
           patrial mRNA
          Length = 1883

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 124 gcagagttctggtacaataca 144
           |||||||||||||||||||||
Sbjct: 584 gcagagttctggtacaataca 604

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>ref|XM_580650.2| PREDICTED: Bos taurus similar to Adenylate kinase isoenzyme 4,
           mitochondrial (ATP-AMP transphosphorylase) (LOC504511),
           mRNA
          Length = 2142

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 205 tggggcagtttctcagagtacctga 229
           |||||||||||||||||||| ||||
Sbjct: 40  tggggcagtttctcagagtatctga 16

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>emb|AL606760.9| Human DNA sequence from clone RP5-1024G6 on chromosome 1 Contains the
             CPT2 gene for carnitine palmitoyltransferase II, two novel
             genes, gene FLJ20580, the MAGOH gene for mago-nashi
             homolog, proliferation-associated (Drosophila) and the 3'
             end of the LRP8 gene for low density lipoprotein
             receptor-related protein 8 apolipoprotein e receptor,
             complete sequence
          Length = 120890

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   gaccttgtcccaagctggcct 444
             |||||||||||||||||||||
Sbjct: 80696 gaccttgtcccaagctggcct 80716

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>emb|AL021940.1|HS117P20 Human DNA sequence from clone RP1-117P20 on chromosome 1q24 Contains
             part of a novel gene (FLJ45155 FLJ10706 FLJ39174), the
             SELL gene for selectin L (lymphocyte adhesion molecule 1),
             the SELE gene for selectin E (endothelial adhesion
             molecule 1) and two novel genes (MGC9084), complete
             sequence
          Length = 141589

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 360   gttttctgtgggagagttggt 380
             |||||||||||||||||||||
Sbjct: 85699 gttttctgtgggagagttggt 85719

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 584     tccccaaaccactgacaatgg 604
               |||||||||||||||||||||
Sbjct: 3952049 tccccaaaccactgacaatgg 3952069

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 450      tattttggcccctttcagatcttgg 474
                |||||||| ||||||||||||||||
Sbjct: 12883328 tattttggtccctttcagatcttgg 12883304

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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0496D04
          Length = 197358

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 584    tccccaaaccactgacaatgg 604
              |||||||||||||||||||||
Sbjct: 191161 tccccaaaccactgacaatgg 191181

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>dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1140D12
          Length = 139301

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 450   tattttggcccctttcagatcttgg 474
             |||||||| ||||||||||||||||
Sbjct: 34769 tattttggtccctttcagatcttgg 34745

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>dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1656_E11
          Length = 116211

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 584   tccccaaaccactgacaatgg 604
             |||||||||||||||||||||
Sbjct: 54775 tccccaaaccactgacaatgg 54795

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>dbj|AP005494.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0086M15
          Length = 153491

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 124  gcagagttctggtacaataca 144
            |||||||||||||||||||||
Sbjct: 8708 gcagagttctggtacaataca 8688

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>dbj|AP004649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1465_C11
          Length = 108091

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   gcagagttctggtacaataca 144
             |||||||||||||||||||||
Sbjct: 89130 gcagagttctggtacaataca 89110

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>dbj|AK064592.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-G06, full
           insert sequence
          Length = 1883

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 124 gcagagttctggtacaataca 144
           |||||||||||||||||||||
Sbjct: 584 gcagagttctggtacaataca 604

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>gb|DQ219841.1| Tetrahymena thermophila Apm1Ap (APM1A) gene, complete cds
          Length = 2187

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 582 tatccccaaaccactgacaat 602
           |||||||||||||||||||||
Sbjct: 478 tatccccaaaccactgacaat 498

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>gb|M87298.1|CHKNPYA1 Chicken neuropeptide Y gene, exons 1-3
          Length = 6423

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 426  ccttgtcccaagctggccttc 446
            |||||||||||||||||||||
Sbjct: 2204 ccttgtcccaagctggccttc 2224

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>gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, complete sequence
          Length = 229200

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   tgtcccaagctggccttcaa 448
             ||||||||||||||||||||
Sbjct: 80790 tgtcccaagctggccttcaa 80809

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>gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosome 1, complete sequence
          Length = 241735

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    tgtcccaagctggccttcaa 448
              ||||||||||||||||||||
Sbjct: 161764 tgtcccaagctggccttcaa 161745



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   tgtcccaagctggccttcaa 448
             ||||||||||||||||||||
Sbjct: 79240 tgtcccaagctggccttcaa 79259



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   tgtcccaagctggccttcaa 448
             ||||||||||||||||||||
Sbjct: 31803 tgtcccaagctggccttcaa 31784

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>gb|AC158993.2| Mus musculus BAC clone RP24-427N13 from chromosome 7, complete sequence
          Length = 179746

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   tcccaagctggccttcaaat 450
             ||||||||||||||||||||
Sbjct: 91436 tcccaagctggccttcaaat 91417

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>gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosome 1, complete sequence
          Length = 169725

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    tgtcccaagctggccttcaa 448
              ||||||||||||||||||||
Sbjct: 148386 tgtcccaagctggccttcaa 148405



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    tgtcccaagctggccttcaa 448
              ||||||||||||||||||||
Sbjct: 109710 tgtcccaagctggccttcaa 109691

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>gb|AC123856.4| Mus musculus BAC clone RP23-341H24 from chromosome 1, complete sequence
          Length = 226881

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    tgtcccaagctggccttcaa 448
              ||||||||||||||||||||
Sbjct: 155478 tgtcccaagctggccttcaa 155497

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>gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, complete sequence
          Length = 186195

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   gaccatactccagtcttcag 578
             ||||||||||||||||||||
Sbjct: 62191 gaccatactccagtcttcag 62172

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>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and
              01G10 from library NotreDame1 of Anopheles gambiae (African
              malaria mosquito) strain PEST
          Length = 447895

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 465    cagatcttggagaagattgg 484
              ||||||||||||||||||||
Sbjct: 262007 cagatcttggagaagattgg 262026

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>emb|AJ746250.1| Yarrowia lipolytica retrotransposon Tyl6
          Length = 5108

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 25   actgatggacagtcagaaagggtgaaca 52
            |||||||||||||||||| | |||||||
Sbjct: 4028 actgatggacagtcagaacgagtgaaca 4055

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>gb|AC121807.3| Mus musculus BAC clone RP23-448N11 from chromosome 16, complete
             sequence
          Length = 178155

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    agtcagaaagggtgaacaaa 54
             ||||||||||||||||||||
Sbjct: 58290 agtcagaaagggtgaacaaa 58271

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>emb|AL589746.11| Human DNA sequence from clone RP4-755G5 on chromosome 1 Contains part
            of the MMEL2 gene for membrane metallo-endopeptidase-like
            2, complete sequence
          Length = 23910

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 352  cccagggagttttctgtggg 371
            ||||||||||||||||||||
Sbjct: 2886 cccagggagttttctgtggg 2905

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>emb|AL513262.7| Human DNA sequence from clone RP11-499I15 on chromosome 1, complete
            sequence
          Length = 41502

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 300  ttgcaaagagcccaaacagaaaat 323
            ||||||||| ||||||||||||||
Sbjct: 9169 ttgcaaagatcccaaacagaaaat 9146

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>ref|XM_503941.1| Yarrowia lipolytica CLIB122, YALI0E14399g predicted mRNA
          Length = 2445

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 25   actgatggacagtcagaaagggtgaaca 52
            |||||||||||||||||| | |||||||
Sbjct: 1651 actgatggacagtcagaacgagtgaaca 1678

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>emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M15 on chromosome 20q12-13.12
              Contains the PPIAL gene for peptidylprolyl isomerase A
              (cyclophilin A)-like pseudogene, the 5' end of the PTPRT
              gene for protein tyrosine phosphatase receptor type T, a
              novel gene and two CpG Islands, complete sequence
          Length = 177562

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 601    atggacactgaagatttaca 620
              ||||||||||||||||||||
Sbjct: 106122 atggacactgaagatttaca 106103

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>emb|AL929280.6| Mouse DNA sequence from clone RP23-67M20 on chromosome 11 Contains a
              novel gene (2810471M01Rik), the 5' end of the gene for a
              novel protein (E030025D05Rik) and a CpG island, complete
              sequence
          Length = 216627

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    aaacagaaaatcaaggctga 332
              ||||||||||||||||||||
Sbjct: 141282 aaacagaaaatcaaggctga 141263

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>gb|AC128688.4| Homo sapiens 3 BAC RP11-757F18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 81001

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   caatatccttgatcaacaga 425
             ||||||||||||||||||||
Sbjct: 36258 caatatccttgatcaacaga 36277

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>gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosome 16, complete
             sequence
          Length = 174250

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tggacagtcagaaagggtga 49
             ||||||||||||||||||||
Sbjct: 68193 tggacagtcagaaagggtga 68174

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>gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence
          Length = 185590

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gtgaacaaatgtcttgaaat 65
              ||||||||||||||||||||
Sbjct: 130603 gtgaacaaatgtcttgaaat 130584

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>gb|AC100863.2| Homo sapiens chromosome 18, clone RP11-751H17, complete sequence
          Length = 175527

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gtgaacaaatgtcttgaaat 65
             ||||||||||||||||||||
Sbjct: 40286 gtgaacaaatgtcttgaaat 40267

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>gb|AC055714.11| Homo sapiens 3 BAC RP11-85P9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167788

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    tatttctgaaacttcaacct 399
              ||||||||||||||||||||
Sbjct: 158541 tatttctgaaacttcaacct 158560

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>gb|AC090684.6| Homo sapiens chromosome 18, clone RP11-409K17, complete sequence
          Length = 77101

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   agttttctgtgggagagttg 378
             ||||||||||||||||||||
Sbjct: 67746 agttttctgtgggagagttg 67727

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>gb|AE009869.1|AE009869 Pyrobaculum aerophilum strain IM2 section 124 of 201 of the complete
             genome
          Length = 13561

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 531   ccagtcccagctcaagcaac 550
             ||||||||||||||||||||
Sbjct: 10677 ccagtcccagctcaagcaac 10658

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>dbj|AK163333.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020015G01 product:unclassifiable, full insert
           sequence
          Length = 2704

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 429 tgtcccaagctggccttcaa 448
           ||||||||||||||||||||
Sbjct: 629 tgtcccaagctggccttcaa 648

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>gb|AC026424.5| Homo sapiens chromosome 5 clone CTD-2174D2, complete sequence
          Length = 123003

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   aacaccatttgcaaagagcc 311
             ||||||||||||||||||||
Sbjct: 17096 aacaccatttgcaaagagcc 17077

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>gb|AC018994.7|AC018994 Homo sapiens chromosome 18, clone RP11-619L19, complete sequence
          Length = 166451

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   agttttctgtgggagagttg 378
             ||||||||||||||||||||
Sbjct: 23462 agttttctgtgggagagttg 23443

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>gb|AC156247.2| Xenopus tropicalis clone ISB1-181M9, complete sequence
          Length = 96628

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   tcagatctatccccaaacca 594
             ||||||||||||||||||||
Sbjct: 13888 tcagatctatccccaaacca 13869

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>gb|AC010245.4|AC010245 Homo sapiens chromosome 5 clone CTC-366B18, complete sequence
          Length = 117840

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   aacaccatttgcaaagagcc 311
             ||||||||||||||||||||
Sbjct: 56365 aacaccatttgcaaagagcc 56384

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>gb|AC009346.5|AC009346 Drosophila melanogaster, chromosome 3R, region 83A-83B, BAC clone
              BACR03P13, complete sequence
          Length = 168448

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tcagaaagggtgaacaaatg 56
              ||||||||||||||||||||
Sbjct: 125363 tcagaaagggtgaacaaatg 125344

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>gb|AC008311.3|AC008311 Drosophila melanogaster, chromosome 3R, region 83B-83C, BAC clone
             BACR02L23, complete sequence
          Length = 161117

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    tcagaaagggtgaacaaatg 56
             ||||||||||||||||||||
Sbjct: 12394 tcagaaagggtgaacaaatg 12375

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>gb|AC008488.7|AC008488 Homo sapiens chromosome 5 clone CTC-424O12, complete sequence
          Length = 208117

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    aacaccatttgcaaagagcc 311
              ||||||||||||||||||||
Sbjct: 181318 aacaccatttgcaaagagcc 181299

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>gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome 8, complete sequence
          Length = 229472

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    tgtcccaagctggccttcaa 448
              ||||||||||||||||||||
Sbjct: 119868 tgtcccaagctggccttcaa 119887



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   tgtcccaagctggccttcaa 448
             ||||||||||||||||||||
Sbjct: 80255 tgtcccaagctggccttcaa 80236

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>gb|AC133528.4| Homo sapiens BAC clone RP11-367H1 from 2, complete sequence
          Length = 151700

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     caacaaagtgacacaattgg 114
              ||||||||||||||||||||
Sbjct: 129520 caacaaagtgacacaattgg 129501

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>gb|AC068630.21| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164161

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 221   agtacctgatgatgcttcacctga 244
             |||| |||||||||||||||||||
Sbjct: 92163 agtaactgatgatgcttcacctga 92140

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>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0062E01
          Length = 161804

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 53     aatgtcttgaaatgtatctcatgtgtgc 80
              |||| |||||||||||||||| ||||||
Sbjct: 119544 aatgccttgaaatgtatctcaggtgtgc 119517

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>gb|AC005386.1|AC005386 citb_57_l_21, complete sequence
          Length = 196361

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 300   ttgcaaagagcccaaacagaaaat 323
             ||||||||| ||||||||||||||
Sbjct: 61572 ttgcaaagatcccaaacagaaaat 61549

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>emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 map Xq28, complete
             sequence
          Length = 166183

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   attggtccagcagcttacaa 499
             ||||||||||||||||||||
Sbjct: 70023 attggtccagcagcttacaa 70004

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>gb|AE003602.4| Drosophila melanogaster chromosome 3R, section 6 of 118 of the complete
              sequence
          Length = 326091

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tcagaaagggtgaacaaatg 56
              ||||||||||||||||||||
Sbjct: 285434 tcagaaagggtgaacaaatg 285415

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>gb|BC099598.1| Mus musculus similar to Sp110 nuclear body protein, mRNA (cDNA
           clone IMAGE:3326350), complete cds
          Length = 1303

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 429 tgtcccaagctggccttcaa 448
           ||||||||||||||||||||
Sbjct: 493 tgtcccaagctggccttcaa 512

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>gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosome 17, complete sequence
          Length = 158575

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    agaccttgtcccaagctggc 442
              ||||||||||||||||||||
Sbjct: 129351 agaccttgtcccaagctggc 129332

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>dbj|AK115381.1| Ciona intestinalis cDNA, clone:cieg048k02, full insert sequence
          Length = 2085

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 155 cttctttgggatgttcccccttta 178
           ||||||||||||| ||||||||||
Sbjct: 537 cttctttgggatggtcccccttta 514

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>gb|AC132444.3| Mus musculus BAC clone RP23-160D6 from 8, complete sequence
          Length = 206961

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   tgtcccaagctggccttcaa 448
             ||||||||||||||||||||
Sbjct: 71629 tgtcccaagctggccttcaa 71648



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   tgtcccaagctggccttcaa 448
             ||||||||||||||||||||
Sbjct: 31713 tgtcccaagctggccttcaa 31694

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>gb|AC131696.4| Mus musculus BAC clone RP23-403E5 from 1, complete sequence
          Length = 214068

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    tgtcccaagctggccttcaa 448
              ||||||||||||||||||||
Sbjct: 204505 tgtcccaagctggccttcaa 204486



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   tgtcccaagctggccttcaa 448
             ||||||||||||||||||||
Sbjct: 24780 tgtcccaagctggccttcaa 24761

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>gb|AC150034.2| Mus musculus BAC clone RP23-428H16 from 16, complete sequence
          Length = 187989

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     agtcagaaagggtgaacaaa 54
              ||||||||||||||||||||
Sbjct: 152732 agtcagaaagggtgaacaaa 152713

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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 25      actgatggacagtcagaaagggtgaaca 52
               |||||||||||||||||| | |||||||
Sbjct: 1727641 actgatggacagtcagaacgagtgaaca 1727668

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>dbj|AP004577.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT10N22, TM0381,
             complete sequence
          Length = 80655

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 304   aaagagcccaaacagaaaatcaag 327
             ||||||| ||||||||||||||||
Sbjct: 66853 aaagagcacaaacagaaaatcaag 66876

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>gb|AC168977.6| Mus musculus chromosome 1, clone RP23-285N8, complete sequence
          Length = 153618

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    tgtcccaagctggccttcaa 448
              ||||||||||||||||||||
Sbjct: 147094 tgtcccaagctggccttcaa 147075

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>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete
              sequence
          Length = 205436

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    ctggccttcaaatattttgg 457
              ||||||||||||||||||||
Sbjct: 153423 ctggccttcaaatattttgg 153404

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>gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome 17, complete sequence
          Length = 208781

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    agaccttgtcccaagctggc 442
              ||||||||||||||||||||
Sbjct: 159160 agaccttgtcccaagctggc 159141

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>emb|X79506.1|CTCP1CT2 C.tentans Cp1 (SINE transposable element), clone lambdaCt2
          Length = 3694

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   atgtcttgaaatgtatctca 73
            ||||||||||||||||||||
Sbjct: 2935 atgtcttgaaatgtatctca 2954


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,323,235
Number of Sequences: 3902068
Number of extensions: 6323235
Number of successful extensions: 150421
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150037
Number of HSP's gapped (non-prelim): 384
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result