ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags9a20 |
|---|---|
| Clone Library Name | barley_pub |
>RL5A_ORYSA (P49625) 60S ribosomal protein L5-1| Length = 304 Score = 112 bits (280), Expect(3) = 8e-37 Identities = 56/66 (84%), Positives = 60/66 (90%) Frame = +2 Query: 125 KGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNAL 304 KGI AD MEA+YKKVHAAIRADP+MAKSTK P THKRYN KKLTYE+RKASLVERLNAL Sbjct: 229 KGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNAL 288 Query: 305 NNSAGA 322 N+SAGA Sbjct: 289 NSSAGA 294 Score = 53.1 bits (126), Expect(3) = 8e-37 Identities = 22/28 (78%), Positives = 26/28 (92%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L ++ HRKYIYGGHVADYMRS+A+EEPE Sbjct: 190 LDSDIHRKYIYGGHVADYMRSMAEEEPE 217 Score = 28.1 bits (61), Expect(3) = 8e-37 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +1 Query: 85 PXKYQTHFSEYIKXG 129 P K+Q HFSEY+K G Sbjct: 216 PEKFQAHFSEYLKKG 230
>RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2| Length = 304 Score = 111 bits (277), Expect(3) = 2e-36 Identities = 55/66 (83%), Positives = 60/66 (90%) Frame = +2 Query: 125 KGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNAL 304 KGI AD ME++YKKVHAAIRADP+MAKSTK P THKRYN KKLTYE+RKASLVERLNAL Sbjct: 229 KGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNAL 288 Query: 305 NNSAGA 322 N+SAGA Sbjct: 289 NSSAGA 294 Score = 53.1 bits (126), Expect(3) = 2e-36 Identities = 22/28 (78%), Positives = 26/28 (92%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L ++ HRKYIYGGHVADYMRS+A+EEPE Sbjct: 190 LDSDIHRKYIYGGHVADYMRSMAEEEPE 217 Score = 28.1 bits (61), Expect(3) = 2e-36 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +1 Query: 85 PXKYQTHFSEYIKXG 129 P K+Q HFSEY+K G Sbjct: 216 PEKFQAHFSEYLKKG 230
>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5| Length = 302 Score = 97.8 bits (242), Expect(3) = 4e-31 Identities = 47/64 (73%), Positives = 54/64 (84%) Frame = +2 Query: 125 KGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNAL 304 KGI AD++E +YKKVHAAIRA+P KS KP PK HKRYN KKLTY+ERKA LVERLNAL Sbjct: 228 KGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNAL 287 Query: 305 NNSA 316 N++A Sbjct: 288 NSAA 291 Score = 45.8 bits (107), Expect(3) = 4e-31 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L E HRKYI+GGHVA YMR+L ++EPE Sbjct: 189 LDVEVHRKYIFGGHVAAYMRTLMEDEPE 216 Score = 30.8 bits (68), Expect(3) = 4e-31 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = +1 Query: 85 PXKYQTHFSEYIKXG 129 P KYQ+HFSEYIK G Sbjct: 215 PEKYQSHFSEYIKKG 229
>RL5_SOLME (P93779) 60S ribosomal protein L5 (Fragment)| Length = 121 Score = 91.7 bits (226), Expect(3) = 4e-28 Identities = 44/63 (69%), Positives = 51/63 (80%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNALNN 310 ++ D++E +YKKVHAAIR DPS KS K PKTHKRYN KKLTYEERKA L+ERLNALN Sbjct: 49 LAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALNA 108 Query: 311 SAG 319 + G Sbjct: 109 AGG 111 Score = 45.8 bits (107), Expect(3) = 4e-28 Identities = 20/28 (71%), Positives = 22/28 (78%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L AE HRKYIYGGHVA YM L ++EPE Sbjct: 8 LDAEVHRKYIYGGHVAAYMNILMEDEPE 35 Score = 26.9 bits (58), Expect(3) = 4e-28 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +1 Query: 85 PXKYQTHFSEYIK 123 P KYQ+HFS YIK Sbjct: 34 PEKYQSHFSSYIK 46
>RL5_ARATH (P49227) 60S ribosomal protein L5| Length = 301 Score = 88.6 bits (218), Expect(3) = 5e-27 Identities = 41/65 (63%), Positives = 51/65 (78%) Frame = +2 Query: 125 KGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNAL 304 KG+ A+ +E +YKKVHAAIRA+P+ K+ K APK HKRYN KKLTYEERK L+ER+ AL Sbjct: 228 KGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKAL 287 Query: 305 NNSAG 319 N + G Sbjct: 288 NGAGG 292 Score = 45.1 bits (105), Expect(3) = 5e-27 Identities = 18/28 (64%), Positives = 23/28 (82%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L AE HR YIYGGHV++YM+ L ++EPE Sbjct: 189 LDAEIHRNYIYGGHVSNYMKLLGEDEPE 216 Score = 26.9 bits (58), Expect(3) = 5e-27 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = +1 Query: 85 PXKYQTHFSEYIKXG 129 P K QTHFS YIK G Sbjct: 215 PEKLQTHFSAYIKKG 229
>RL5_BOMMO (O76190) 60S ribosomal protein L5| Length = 299 Score = 54.7 bits (130), Expect(2) = 7e-12 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 8/66 (12%) Frame = +2 Query: 128 GISADDMEAVYKKVHAAIRADPS-MAKSTKPAPKTHKRYNPKKLTYEER-------KASL 283 G++AD +EA+YKK H AIRADPS K K KR+N +KLT ER KAS Sbjct: 230 GVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASF 289 Query: 284 VERLNA 301 ++RL A Sbjct: 290 IKRLQA 295 Score = 34.7 bits (78), Expect(2) = 7e-12 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 AE HR +I+G HVA+YMRSL ++ + Sbjct: 192 AEVHRAHIFGLHVAEYMRSLEQDDED 217
>RL5_STYCL (Q26481) 60S ribosomal protein L5| Length = 294 Score = 51.2 bits (121), Expect(2) = 9e-12 Identities = 25/49 (51%), Positives = 35/49 (71%) Frame = +2 Query: 128 GISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 274 G++AD +E +Y K HAAIR DP+ K T A KT KR+N KK+T+ +R+ Sbjct: 229 GVTADTVEEMYTKAHAAIREDPTPKKKTDFAGKT-KRWNRKKMTFSQRR 276 Score = 37.7 bits (86), Expect(2) = 9e-12 Identities = 14/26 (53%), Positives = 21/26 (80%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 AE HR +I+GGHV++YM+ L +E+ E Sbjct: 191 AEVHRSHIFGGHVSNYMKELEEEDEE 216
>RL5_NEUCR (O59953) 60S ribosomal protein L5 (CPR4)| Length = 301 Score = 44.7 bits (104), Expect(2) = 7e-11 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 8/68 (11%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHK--------RYNPKKLTYEERKASLV 286 + AD +E +Y + HAAIR DP K+ APK K +Y KLT E+R A + Sbjct: 234 LEADGLEDLYAEAHAAIREDP-FKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQ 292 Query: 287 ERLNALNN 310 ER+ AL + Sbjct: 293 ERIAALRS 300 Score = 41.2 bits (95), Expect(2) = 7e-11 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L AE +KYI+GGHVA+YM +LAD++ E Sbjct: 193 LDAETLKKYIFGGHVAEYMETLADDDEE 220
>RL5_CAEEL (P49405) 60S ribosomal protein L5| Length = 293 Score = 54.3 bits (129), Expect(2) = 7e-11 Identities = 27/55 (49%), Positives = 39/55 (70%) Frame = +2 Query: 128 GISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 292 G++AD++ A Y+KVH+AIRAD S A K A K KR+ K+LTY+ERK + ++ Sbjct: 229 GLNADNLVATYQKVHSAIRADASPA--AKKAAKPSKRHTAKRLTYDERKQRVADK 281 Score = 31.6 bits (70), Expect(2) = 7e-11 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 AE HR I G HVADYM L +E+ + Sbjct: 191 AEAHRDRILGKHVADYMTYLKEEDED 216
>RL5B_SCHPO (O74306) 60S ribosomal protein L5-B| Length = 294 Score = 46.2 bits (108), Expect(2) = 1e-10 Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Frame = +2 Query: 128 GISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHK---RYNPKKLTYEERKASLVERLN 298 GI +D +E +Y + +A IR DPS KS K A +Y +KLT EERK ER N Sbjct: 230 GIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERK----ERFN 285 Query: 299 ALNNSAGAA 325 A AG A Sbjct: 286 AKVIEAGRA 294 Score = 38.9 bits (89), Expect(2) = 1e-10 Identities = 17/28 (60%), Positives = 20/28 (71%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L E RKYIYGGHVA+YM L D++ E Sbjct: 190 LDDETLRKYIYGGHVAEYMEMLIDDDEE 217
>RL5_HELAN (O65353) 60S ribosomal protein L5| Length = 297 Score = 45.4 bits (106), Expect(2) = 3e-10 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Frame = +2 Query: 128 GISADDMEAVYKKVHAAIRADPSMAKSTKPA-PKTHKRYNPKKLTYEERKASL 283 G++AD +E +YKK H AIRA+P+ K A PK KR+ KKLT E+R+ + Sbjct: 230 GLNADAIEGLYKKAHEAIRANPARKTVAKKAHPK--KRWTEKKLTREQRQGKV 280 Score = 38.5 bits (88), Expect(2) = 3e-10 Identities = 15/26 (57%), Positives = 22/26 (84%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 A+ HR++I+G HVA+YMR LA+E+ E Sbjct: 192 ADVHRQHIFGQHVAEYMRQLAEEDDE 217
>RL5_DUNSA (O22608) 60S ribosomal protein L5| Length = 271 Score = 39.7 bits (91), Expect(3) = 9e-10 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L E +KYIYGGHVA+Y ++ +EEPE Sbjct: 188 LDTEVLQKYIYGGHVAEYQETMQEEEPE 215 Score = 35.8 bits (81), Expect(3) = 9e-10 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPK 250 I D +E +YK+VHA IR +P K + P KR++P+ Sbjct: 229 IEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWSPQ 268 Score = 25.8 bits (55), Expect(3) = 9e-10 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +1 Query: 73 QMRNPXKYQTHFSEYIK 123 Q P KYQ HFS Y++ Sbjct: 210 QEEEPEKYQAHFSSYVE 226
>RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S| RNA-binding protein) Length = 296 Score = 43.1 bits (100), Expect(2) = 1e-08 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTH-----KRYNPKKLTYEERKASLVERL 295 I AD +E +Y H AIRADP+ + K K K+Y KL+ EER A + ++ Sbjct: 230 IDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKI 289 Query: 296 NAL 304 AL Sbjct: 290 AAL 292 Score = 35.0 bits (79), Expect(2) = 1e-08 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +3 Query: 15 EXHRKYIYGGHVADYMRSLADEEPE 89 E R YI+GGHV+ YM LAD++ E Sbjct: 192 ELLRSYIFGGHVSQYMEELADDDEE 216
>RL5B_XENLA (P15126) 60S ribosomal protein L5-B| Length = 295 Score = 45.1 bits (105), Expect(2) = 8e-08 Identities = 22/55 (40%), Positives = 34/55 (61%) Frame = +2 Query: 128 GISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 292 G++AD +E +YKK HA IR +P K K K KR+N KL+ E++K + ++ Sbjct: 229 GVAADQLEDIYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKDRVAQK 282 Score = 30.4 bits (67), Expect(2) = 8e-08 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +3 Query: 15 EXHRKYIYGGHVADYMRSLADEEPE 89 E HRK+I+ ++A+YMR L +E+ + Sbjct: 192 EVHRKHIFAQNIAEYMRLLMEEDED 216
>RL5A_XENLA (P15125) 60S ribosomal protein L5-A| Length = 295 Score = 43.9 bits (102), Expect(2) = 1e-07 Identities = 22/55 (40%), Positives = 34/55 (61%) Frame = +2 Query: 128 GISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 292 G++AD +E +YKK HA IR +P K K K KR+N KL+ E++K + ++ Sbjct: 229 GVTADQVEDLYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKDRVAQK 282 Score = 30.8 bits (68), Expect(2) = 1e-07 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = +3 Query: 15 EXHRKYIYGGHVADYMRSLADEEPE 89 E HRK+I+ +VA+YMR L +E+ + Sbjct: 192 EVHRKHIFAQNVAEYMRLLMEEDED 216
>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5| Length = 296 Score = 39.3 bits (90), Expect(2) = 2e-07 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 292 ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K + ++ Sbjct: 230 VTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQK 282 Score = 34.7 bits (78), Expect(2) = 2e-07 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 AE HRK+I G +VADYMR L +E+ + Sbjct: 191 AEVHRKHIMGQNVADYMRYLMEEDED 216
>RL5_HUMAN (P46777) 60S ribosomal protein L5| Length = 296 Score = 39.3 bits (90), Expect(2) = 2e-07 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 292 ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K + ++ Sbjct: 230 VTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQK 282 Score = 34.7 bits (78), Expect(2) = 2e-07 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 AE HRK+I G +VADYMR L +E+ + Sbjct: 191 AEVHRKHIMGQNVADYMRYLMEEDED 216
>RL5_RAT (P09895) 60S ribosomal protein L5| Length = 296 Score = 38.9 bits (89), Expect(2) = 3e-07 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 292 ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K + ++ Sbjct: 230 VTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQK 282 Score = 34.7 bits (78), Expect(2) = 3e-07 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 AE HRK+I G +VADYMR L +E+ + Sbjct: 191 AEVHRKHIMGQNVADYMRYLMEEDED 216
>RL5_MOUSE (P47962) 60S ribosomal protein L5| Length = 296 Score = 38.9 bits (89), Expect(2) = 3e-07 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 292 ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K + ++ Sbjct: 230 VTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQK 282 Score = 34.7 bits (78), Expect(2) = 3e-07 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 AE HRK+I G +VADYMR L +E+ + Sbjct: 191 AEVHRKHIMGQNVADYMRYLMEEDED 216
>RL5_CHICK (P22451) 60S ribosomal protein L5| Length = 296 Score = 38.5 bits (88), Expect(2) = 4e-07 Identities = 21/54 (38%), Positives = 31/54 (57%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVER 292 I+ D ME +YKK HAAIR +P K K K KR N K++ ++K + ++ Sbjct: 230 ITPDGMEEMYKKAHAAIRDNPVHEKKPKREVK-KKRVNSTKMSLAQKKDRVAQK 282 Score = 34.7 bits (78), Expect(2) = 4e-07 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = +3 Query: 12 AEXHRKYIYGGHVADYMRSLADEEPE 89 AE HRK+I G +VADYMR L +E+ + Sbjct: 191 AEVHRKHIMGQNVADYMRYLMEEDED 216
>RL5_ANOGA (O44248) 60S ribosomal protein L5| Length = 327 Score = 37.4 bits (85), Expect(2) = 2e-06 Identities = 16/29 (55%), Positives = 22/29 (75%) Frame = +3 Query: 3 SLXAEXHRKYIYGGHVADYMRSLADEEPE 89 S AE HR +I+G HVA+YMR+L +E+ E Sbjct: 189 SFNAEMHRDHIFGLHVANYMRTLEEEDEE 217 Score = 33.1 bits (74), Expect(2) = 2e-06 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 128 GISADDMEAVYKKVHAAIR-ADPSMAKSTKPAPKTHKRY 241 GI ADD+E +YK HA+IR PS + +P++ R+ Sbjct: 230 GIKADDIENIYKNAHASIRKIPPSRRNPRRRSPRSGGRW 268
>RL5A_SCHPO (P52822) 60S ribosomal protein L5-A| Length = 294 Score = 38.9 bits (89), Expect = 0.009 Identities = 17/28 (60%), Positives = 20/28 (71%) Frame = +3 Query: 6 LXAEXHRKYIYGGHVADYMRSLADEEPE 89 L E RKYIYGGHVA+YM L D++ E Sbjct: 190 LDDETLRKYIYGGHVAEYMEMLIDDDEE 217
>PTPR2_MOUSE (P80560) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP IA-2beta) (Protein tyrosine phosphatase-NP) (PTP-NP) Length = 1001 Score = 29.3 bits (64), Expect = 7.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 247 QEAHLRGEEGQPRREAQRPQQL 312 QE+H RG EGQPR + P+ + Sbjct: 340 QESHGRGAEGQPREQTDAPETM 361
>TREF1_HUMAN (Q96PN7) Transcriptional-regulating factor 1| (Transcriptional-regulating protein 132) (Zinc finger transcription factor TReP-132) (Zinc finger protein rapa) Length = 1200 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +1 Query: 202 QINQASSQ--DSQEVQPQEAHLRGEEGQPRREAQRPQQL 312 Q QA Q QE+Q Q +R + QP + Q+PQQL Sbjct: 274 QQQQAGQQRISMQEIQTQPQQIRPSQPQPPPQQQQPQQL 312
>VTA1_YEAST (Q06263) Vacuolar protein sorting-associated protein VTA1| (VPS20-associated protein 1) Length = 330 Score = 28.9 bits (63), Expect = 9.6 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 131 ISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVERLNALNN 310 I+ D+ + V K+V + PS +PA HK Y +LT +AS +E++ L Sbjct: 248 ITKDEQQVVKKEVDLTRPSAPS-----EPAAAEHKSYTKDELTKIMDRASKIEQIQKLAK 302 Query: 311 SAGAA 325 A +A Sbjct: 303 YAISA 307 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,174,386 Number of Sequences: 219361 Number of extensions: 1106133 Number of successful extensions: 3324 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3314 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
