Clone Name | bags9a20 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_190270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 906 Score = 176 bits (89), Expect = 5e-41 Identities = 264/320 (82%), Gaps = 2/320 (0%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatga 79 |||||||||||||||||| || ||||| || ||||||||||||||||| | || || || Sbjct: 573 tcaccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggcggagga 632 Query: 80 ggaacccgagnaagtaccaaactcacttcagtgagtacatcaagnaagggaatctcagct 139 |||||| ||| || | |||| | ||||||||||||||| ||||| |||||||| ||| Sbjct: 633 ggaacctgagaaatt-ccaagcccacttcagtgagtacctcaag-aagggaattgatgct 690 Query: 140 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 199 |||| |||||||||| | ||||||||||| || ||||||||||| |||||||||| |||| Sbjct: 691 gatggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatg 750 Query: 200 gccaaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacc 259 ||||||||||||||| | || ||| |||||||| ||||||| ||||||||| ||| Sbjct: 751 gccaaatcaaccaagaaggaaccggcgacccacaagagatacaacctcaagaagctaacc 810 Query: 260 tacgaggagaggaaggccagcctcgtcgagaggctcaacgccctcaacaactctgctggt 319 ||||| ||||||||||||| || ||||| || | || || |||||| |||||||||| Sbjct: 811 tacgaacagaggaaggccagtcttgtcgaaagattgaatgctctcaactcctctgctggt 870 Query: 320 gccgccgacgatgacgagga 339 || | || ||||||||||| Sbjct: 871 gctgatgatgatgacgagga 890
>dbj|AK104693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H05, full insert sequence Length = 1219 Score = 176 bits (89), Expect = 5e-41 Identities = 264/320 (82%), Gaps = 2/320 (0%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatga 79 |||||||||||||||||| || ||||| || ||||||||||||||||| | || || || Sbjct: 669 tcaccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggcggagga 728 Query: 80 ggaacccgagnaagtaccaaactcacttcagtgagtacatcaagnaagggaatctcagct 139 |||||| ||| || | |||| | ||||||||||||||| ||||| |||||||| ||| Sbjct: 729 ggaacctgagaaatt-ccaagcccacttcagtgagtacctcaag-aagggaattgatgct 786 Query: 140 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 199 |||| |||||||||| | ||||||||||| || ||||||||||| |||||||||| |||| Sbjct: 787 gatggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatg 846 Query: 200 gccaaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacc 259 ||||||||||||||| | || ||| |||||||| ||||||| ||||||||| ||| Sbjct: 847 gccaaatcaaccaagaaggaaccggcgacccacaagagatacaacctcaagaagctaacc 906 Query: 260 tacgaggagaggaaggccagcctcgtcgagaggctcaacgccctcaacaactctgctggt 319 ||||| ||||||||||||| || ||||| || | || || |||||| |||||||||| Sbjct: 907 tacgaacagaggaaggccagtcttgtcgaaagattgaatgctctcaactcctctgctggt 966 Query: 320 gccgccgacgatgacgagga 339 || | || ||||||||||| Sbjct: 967 gctgatgatgatgacgagga 986
>dbj|AK065268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K21, full insert sequence Length = 1219 Score = 168 bits (85), Expect = 1e-38 Identities = 264/320 (82%), Gaps = 3/320 (0%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatga 79 |||||||||||||||||| || ||||| || ||||||||||||||||| | || || || Sbjct: 670 tcaccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggcggagga 729 Query: 80 ggaacccgagnaagtaccaaactcacttcagtgagtacatcaagnaagggaatctcagct 139 |||||| ||| || | |||| | ||||||||||||||| ||||| |||||||| ||| Sbjct: 730 ggaacctgagaaatt-ccaagcccacttcagtgagtacctcaag-aagggaattgatgct 787 Query: 140 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 199 |||| |||||||||| | ||||||||||| || ||||||||||| |||||||||| |||| Sbjct: 788 gatggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatg 847 Query: 200 gccaaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacc 259 ||||||||||||||| | || ||| |||||||| ||||||| ||||||||| ||| Sbjct: 848 gccaaatcaaccaagaaggaaccggcgacccacaagagatacaacctcaagaagctaacc 907 Query: 260 tacgaggagaggaaggccagcctcgtcgagaggctcaacgccctcaacaactctgctggt 319 ||||| ||||||||||||| || ||||| || | || || |||||| |||||||||| Sbjct: 908 tacgaacagaggaaggccagtct-gtcgaaagattgaatgctctcaactcctctgctggt 966 Query: 320 gccgccgacgatgacgagga 339 || | || ||||||||||| Sbjct: 967 gctgatgatgatgacgagga 986
>gb|AY109375.1| Zea mays CL457_2 mRNA sequence Length = 1397 Score = 165 bits (83), Expect = 2e-37 Identities = 229/275 (83%), Gaps = 2/275 (0%) Strand = Plus / Plus Query: 24 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 83 ||||||||||||||||| || ||||||||||||||||||||| || || || ||||| Sbjct: 661 cgcaagtacatctatggtggccatgttgctgactacatgaggaacctcgctgaagaggag 720 Query: 84 cccgagnaagtaccaaactcacttcagtgagtacatcaagnaagggaatctcagctgatg 143 || ||| |||||||| ||||||||||||||||||| ||| |||||||| ||||||| Sbjct: 721 ccagag-aagtaccagtctcacttcagtgagtacattaag-aagggaattgaggctgatg 778 Query: 144 acatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggcca 203 |||||||||| | ||||||||||| || ||||||||||| ||||||||| ||| | || Sbjct: 779 acatggaagctctgtacaagaaggtccatgctgccatccgtgctgatccttccattgtca 838 Query: 204 aatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctacg 263 | |||||||||| | || ||| || ||||||||||||||||||||||| || || | Sbjct: 839 agtcaaccaagcagccaccaaaggagcataagaggtacaaccccaagaagctgacatatg 898 Query: 264 aggagaggaaggccagcctcgtcgagaggctcaac 298 || ||||||||||||||||| | || ||||||||| Sbjct: 899 agcagaggaaggccagcctcattgaaaggctcaac 933
>emb|X64622.1|OS5SRRNMR O.sativa Rrl5 mRNA for 5S ribosomal RNA Length = 1114 Score = 163 bits (82), Expect = 7e-37 Identities = 264/321 (82%), Gaps = 3/321 (0%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatga 79 |||||||||||||||||| || ||||| || ||||||||||||||||| | || || || Sbjct: 582 tcaccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggcggagga 641 Query: 80 ggaacccgagnaagtaccaaactcacttcagtgagtacatcaagnaagggaatctcagct 139 |||||| ||| || | |||| | ||||||||||||||| ||||| |||||||| ||| Sbjct: 642 ggaacctgagaaatt-ccaagcccacttcagtgagtacctcaag-aagggaattgatgct 699 Query: 140 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgat-cctagcat 198 |||| |||||||||| | ||||||||||| || ||||||||||| |||||| |||| ||| Sbjct: 700 gatggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatccctaccat 759 Query: 199 ggccaaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcac 258 |||||||||||||||| | || ||| |||||||| ||||||| ||||||||| || Sbjct: 760 ggccaaatcaaccaagaaggaaccggcgacccacaagagatacaacctcaagaagctaac 819 Query: 259 ctacgaggagaggaaggccagcctcgtcgagaggctcaacgccctcaacaactctgctgg 318 |||||| ||||||||||||| || ||||| || | || || |||||| ||||||||| Sbjct: 820 ctacgaacagaggaaggccagtcttgtcgaaagattgaatgctctcaactcctctgctgg 879 Query: 319 tgccgccgacgatgacgagga 339 ||| | || ||||||||||| Sbjct: 880 tgctgatgatgatgacgagga 900
>ref|NM_190269.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 155 bits (78), Expect = 2e-34 Identities = 223/269 (82%), Gaps = 2/269 (0%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatga 79 |||||||||||||||||| || ||||| || ||||||||||||||||| | || || || Sbjct: 582 tcaccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggctgagga 641 Query: 80 ggaacccgagnaagtaccaaactcacttcagtgagtacatcaagnaagggaatctcagct 139 |||||| ||| || | |||| | ||||| ||||||||| ||||| |||||||| ||| Sbjct: 642 ggaacctgagaaatt-ccaagcccactttagtgagtacctcaag-aagggaattgacgct 699 Query: 140 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 199 |||| ||||||| || | ||||||||||| || |||||||||||||| ||||||| |||| Sbjct: 700 gatggcatggaatcactgtacaagaaggtccatgctgccatccgcgccgatcctaccatg 759 Query: 200 gccaaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacc 259 |||||||| |||||| | || || |||||||| ||||||| ||||||||| ||| Sbjct: 760 gccaaatcgaccaagaaggaaccggctacccacaagagatacaacctcaagaagctgacc 819 Query: 260 tacgaggagaggaaggccagcctcgtcga 288 |||||| ||||||||||||| |||||||| Sbjct: 820 tacgagcagaggaaggccagtctcgtcga 848
>gb|BT016492.1| Zea mays clone Contig325 mRNA sequence Length = 1365 Score = 149 bits (75), Expect = 1e-32 Identities = 227/275 (82%), Gaps = 2/275 (0%) Strand = Plus / Plus Query: 24 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 83 ||||||||||||||||| || ||||||||||||||||||||| || || || ||||| Sbjct: 645 cgcaagtacatctatggtggccatgttgctgactacatgaggaacctcgctgaagaggag 704 Query: 84 cccgagnaagtaccaaactcacttcagtgagtacatcaagnaagggaatctcagctgatg 143 || ||| |||||||| ||||||||||||||||||| ||| |||||||| ||||| | Sbjct: 705 ccagag-aagtaccagtctcacttcagtgagtacattaag-aagggaattgaggctgacg 762 Query: 144 acatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggcca 203 |||||||||| | ||||||||||| || ||||||||||| ||||||||| ||| || Sbjct: 763 acatggaagctctgtacaagaaggtccatgctgccatccgtgctgatccttctgtggtca 822 Query: 204 aatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctacg 263 | |||||||||| | || ||| ||||||||||||||||||||||| || || |||| Sbjct: 823 agtcaaccaagcagccaccaaaggagcacaagaggtacaaccccaagaaactgacatacg 882 Query: 264 aggagaggaaggccagcctcgtcgagaggctcaac 298 || ||||||||||||| ||| | || ||||||||| Sbjct: 883 agcagaggaaggccagtctcattgaaaggctcaac 917
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 111 bits (56), Expect = 2e-21 Identities = 99/112 (88%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 103 cacttcagtgagtacatcaagnaagggaatctcagctgatgacatggaagcagtttacaa 162 ||||||||||||||| ||||| |||||||| ||||||| |||||||||| | ||||| Sbjct: 38969082 cacttcagtgagtacctcaag-aagggaattgatgctgatggcatggaagcactgtacaa 38969140 Query: 163 gaaggttcacgctgccatccgcgctgatcctagcatggccaaatcaaccaag 214 |||||| || ||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 38969141 gaaggtccatgctgccatccgtgctgatcctaccatggccaaatcaaccaag 38969192 Score = 87.7 bits (44), Expect = 3e-14 Identities = 96/112 (85%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 103 cacttcagtgagtacatcaagnaagggaatctcagctgatgacatggaagcagtttacaa 162 ||||| ||||||||| ||||| |||||||| ||||||| ||||||| || | ||||| Sbjct: 38963750 cactttagtgagtacctcaag-aagggaattgacgctgatggcatggaatcactgtacaa 38963808 Query: 163 gaaggttcacgctgccatccgcgctgatcctagcatggccaaatcaaccaag 214 |||||| || |||||||||||||| ||||||| |||||||||||| |||||| Sbjct: 38963809 gaaggtccatgctgccatccgcgccgatcctaccatggccaaatcgaccaag 38963860 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 239 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcga 288 ||||||| ||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 38963971 tacaacctcaagaagctgacctacgagcagaggaaggccagtctcgtcga 38964020 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgagg 65 |||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 38968800 tcaccgcaagtacatctacggtgggcacgtggctgactacatgagg 38968845 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgagg 65 |||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 38963482 tcaccgcaagtacatctacggtgggcacgtggctgactacatgagg 38963527 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 239 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcgagaggctcaac 298 ||||||| ||||||||| |||||||| ||||||||||||| || ||||| || | || Sbjct: 38969301 tacaacctcaagaagctaacctacgaacagaggaaggccagtcttgtcgaaagattgaat 38969360 Query: 299 gccctcaacaactctgctggtgccgccgacgatgacgagga 339 || |||||| |||||||||||| | || ||||||||||| Sbjct: 38969361 gctctcaactcctctgctggtgctgatgatgatgacgagga 38969401
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 111 bits (56), Expect = 2e-21 Identities = 99/112 (88%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 103 cacttcagtgagtacatcaagnaagggaatctcagctgatgacatggaagcagtttacaa 162 ||||||||||||||| ||||| |||||||| ||||||| |||||||||| | ||||| Sbjct: 42715 cacttcagtgagtacctcaag-aagggaattgatgctgatggcatggaagcactgtacaa 42773 Query: 163 gaaggttcacgctgccatccgcgctgatcctagcatggccaaatcaaccaag 214 |||||| || ||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 42774 gaaggtccatgctgccatccgtgctgatcctaccatggccaaatcaaccaag 42825 Score = 87.7 bits (44), Expect = 3e-14 Identities = 96/112 (85%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 103 cacttcagtgagtacatcaagnaagggaatctcagctgatgacatggaagcagtttacaa 162 ||||| ||||||||| ||||| |||||||| ||||||| ||||||| || | ||||| Sbjct: 37383 cactttagtgagtacctcaag-aagggaattgacgctgatggcatggaatcactgtacaa 37441 Query: 163 gaaggttcacgctgccatccgcgctgatcctagcatggccaaatcaaccaag 214 |||||| || |||||||||||||| ||||||| |||||||||||| |||||| Sbjct: 37442 gaaggtccatgctgccatccgcgccgatcctaccatggccaaatcgaccaag 37493 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 239 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcga 288 ||||||| ||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 37604 tacaacctcaagaagctgacctacgagcagaggaaggccagtctcgtcga 37653 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgagg 65 |||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 42433 tcaccgcaagtacatctacggtgggcacgtggctgactacatgagg 42478 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgagg 65 |||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 37115 tcaccgcaagtacatctacggtgggcacgtggctgactacatgagg 37160 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 239 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcgagaggctcaac 298 ||||||| ||||||||| |||||||| ||||||||||||| || ||||| || | || Sbjct: 42934 tacaacctcaagaagctaacctacgaacagaggaaggccagtcttgtcgaaagattgaat 42993 Query: 299 gccctcaacaactctgctggtgccgccgacgatgacgagga 339 || |||||| |||||||||||| | || ||||||||||| Sbjct: 42994 gctctcaactcctctgctggtgctgatgatgatgacgagga 43034
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 111 bits (56), Expect = 2e-21 Identities = 99/112 (88%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 103 cacttcagtgagtacatcaagnaagggaatctcagctgatgacatggaagcagtttacaa 162 ||||||||||||||| ||||| |||||||| ||||||| |||||||||| | ||||| Sbjct: 133868 cacttcagtgagtacctcaag-aagggaattgatgctgatggcatggaagcactgtacaa 133926 Query: 163 gaaggttcacgctgccatccgcgctgatcctagcatggccaaatcaaccaag 214 |||||| || ||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 133927 gaaggtccatgctgccatccgtgctgatcctaccatggccaaatcaaccaag 133978 Score = 87.7 bits (44), Expect = 3e-14 Identities = 96/112 (85%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 103 cacttcagtgagtacatcaagnaagggaatctcagctgatgacatggaagcagtttacaa 162 ||||| ||||||||| ||||| |||||||| ||||||| ||||||| || | ||||| Sbjct: 128536 cactttagtgagtacctcaag-aagggaattgacgctgatggcatggaatcactgtacaa 128594 Query: 163 gaaggttcacgctgccatccgcgctgatcctagcatggccaaatcaaccaag 214 |||||| || |||||||||||||| ||||||| |||||||||||| |||||| Sbjct: 128595 gaaggtccatgctgccatccgcgccgatcctaccatggccaaatcgaccaag 128646 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 239 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcga 288 ||||||| ||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 128757 tacaacctcaagaagctgacctacgagcagaggaaggccagtctcgtcga 128806 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgagg 65 |||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 133586 tcaccgcaagtacatctacggtgggcacgtggctgactacatgagg 133631 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatgagg 65 |||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 128268 tcaccgcaagtacatctacggtgggcacgtggctgactacatgagg 128313 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 239 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcgagaggctcaac 298 ||||||| ||||||||| |||||||| ||||||||||||| || ||||| || | || Sbjct: 134087 tacaacctcaagaagctaacctacgaacagaggaaggccagtcttgtcgaaagattgaat 134146 Query: 299 gccctcaacaactctgctggtgccgccgacgatgacgagga 339 || |||||| |||||||||||| | || ||||||||||| Sbjct: 134147 gctctcaactcctctgctggtgctgatgatgatgacgagga 134187
>gb|BT016417.1| Zea mays clone Contig250 mRNA sequence Length = 1212 Score = 93.7 bits (47), Expect = 6e-16 Identities = 222/278 (79%), Gaps = 2/278 (0%) Strand = Plus / Plus Query: 21 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 80 ||||||| |||||||||||| || ||||||||||||||||||| | || || || ||| Sbjct: 657 caccgcaggtacatctatggtggccatgttgctgactacatgaagaaccttgctgaagag 716 Query: 81 gaacccgagnaagtaccaaactcacttcagtgagtacatcaagnaagggaatctcagctg 140 || || || |||||||| | |||||||||| |||||| ||| |||||| | |||| Sbjct: 717 gagccaga-aaagtaccagagccacttcagtgcgtacattaag-aagggagttgaggctg 774 Query: 141 atgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatgg 200 |||| || ||||| | ||||||||||| || ||||||||||| || |||||| ||| | Sbjct: 775 atgaaatagaagcgctgtacaagaaggtccatgctgccatccgtgccgatccttccattg 834 Query: 201 ccaaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacct 260 || |||||||||| | || ||| || ||||||||||||||||||||||| || | Sbjct: 835 ttaagtcaaccaagcagccaccaaaggagcataagaggtacaaccccaagaagctgacat 894 Query: 261 acgaggagaggaaggccagcctcgtcgagaggctcaac 298 | ||| ||||||||||||||||| | || ||||||||| Sbjct: 895 atgagcagaggaaggccagcctcattgaaaggctcaac 932
>dbj|AB001583.1| Solanum melongena mRNA for ribosomal protein L5, partial cds Length = 399 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 221 cccaagactcacaagaggtacaaccccaagaagctcacctacgaggagaggaa 273 |||||||| |||||||||||||||| |||||||| ||||| || |||||||| Sbjct: 236 cccaagacacacaagaggtacaaccttaagaagctgacctatgaagagaggaa 288 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 20 tcaccgcaagtacatctatggagggcatgttgctgactacatga 63 |||||||||||| |||||||| || |||||||||| ||||||| Sbjct: 37 tcaccgcaagtatatctatggtggccatgttgctgcatacatga 80 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 158 tacaagaaggttcacgctgccat 180 ||||||||||||||||||||||| Sbjct: 173 tacaagaaggttcacgctgccat 195
>gb|AY106024.1| Zea mays PCO063168 mRNA sequence Length = 620 Score = 56.0 bits (28), Expect = 1e-04 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 24 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 83 ||||||||||||||||| ||||||||||| || |||| | || || |||||||| Sbjct: 484 cgcaagtacatctatggtctccatgttgctgagtatatgaagaatctggctgatgaggag 543 Query: 84 cccgagnaagtaccaaactcacttcagtgagtacatcaag 123 |||||| |||||||| |||||||||| |||||||||||| Sbjct: 544 cccgag-aagtaccaggctcacttcagcgagtacatcaag 582
>gb|DQ228334.1| Solanum tuberosum clone 145F02 unknown mRNA Length = 1114 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 219 ctcccaagactcacaagaggtacaaccccaagaagctcacctacgaggagaggaa 273 |||||||||| |||||||||||||||| |||||||| || || || |||||||| Sbjct: 810 ctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaa 864 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 158 tacaagaaggttcacgctgccatccgcgc 186 |||||||||||||| |||||||| ||||| Sbjct: 749 tacaagaaggttcatgctgccatacgcgc 777
>gb|BT012733.1| Lycopersicon esculentum clone 113662F, mRNA sequence Length = 1161 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 219 ctcccaagactcacaagaggtacaaccccaagaagctcacctacgaggagaggaa 273 |||||||||| |||||||||||||||| |||||||| || || || |||||||| Sbjct: 833 ctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaa 887
>dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06I17, TM0017, complete sequence Length = 121127 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 248 aagaagctcacctacgaggagaggaaggc 276 |||||||||||||| |||||||||||||| Sbjct: 46135 aagaagctcacctatgaggagaggaaggc 46107
>ref|XM_780232.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC580159 (LOC580159), mRNA Length = 1902 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 323 gccgacgatgacgaggatgacgag 346 |||||||||||||||||||||||| Sbjct: 1108 gccgacgatgacgaggatgacgag 1131 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gccgacgatgacgaggatga 342 |||||||||||||||||||| Sbjct: 1168 gccgacgatgacgaggatga 1187
>ref|XM_500389.1| Yarrowia lipolytica CLIB122, YALI0B01540g predicted mRNA Length = 210 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 cgacgatgacgaggatgacgagt 347 ||||||||||||||||||||||| Sbjct: 186 cgacgatgacgaggatgacgagt 208
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 325 cgacgatgacgaggatgacgagt 347 ||||||||||||||||||||||| Sbjct: 245173 cgacgatgacgaggatgacgagt 245151
>ref|XM_366233.1| Magnaporthe grisea 70-15 predicted protein (MG10452.4) partial mRNA Length = 738 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 313 tgctggtgccgccgacgatgacgaggatga 342 ||||| |||||||||||||||||| ||||| Sbjct: 423 tgctgctgccgccgacgatgacgacgatga 452 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 313 tgctggtgccgccgacgatgacgaggatga 342 ||||| |||||||||||||||||| ||||| Sbjct: 354 tgctgctgccgccgacgatgacgacgatga 383 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 tgctggtgccgccgacgatgacga 336 ||||| |||||||||||||||||| Sbjct: 630 tgctgctgccgccgacgatgacga 653
>ref|NM_113448.2| Arabidopsis thaliana ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome AT3G25520 (ATL5) mRNA, complete cds Length = 1254 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 849 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 893 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 717 caaactcacttcagtgcttacatcaagaaagg 748
>ref|XM_363564.1| Magnaporthe grisea 70-15 hypothetical protein (MG01490.4) partial mRNA Length = 873 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 ccgccgacgatgacgaggatg 341 ||||||||||||||||||||| Sbjct: 281 ccgccgacgatgacgaggatg 261
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila melanogaster library) complete sequence Length = 166613 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 150442 cgacgatgacgaggatgacga 150462
>emb|AJ296686.1|PAB296686 Picea abies ATC microsatellite DNA, clone EATC1A02 Length = 421 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 211 cgacgatgacgaggatgacga 191
>gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, complete sequence Length = 230349 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 gaggagaggaaggccagcctc 283 ||||||||||||||||||||| Sbjct: 69393 gaggagaggaaggccagcctc 69373
>gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, complete sequence Length = 154447 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 gaggagaggaaggccagcctc 283 ||||||||||||||||||||| Sbjct: 112671 gaggagaggaaggccagcctc 112651
>gb|AF513502.1| Homo sapiens STRA8 (STRA8) mRNA, complete cds Length = 993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 gaggagaggaaggccagcctc 283 ||||||||||||||||||||| Sbjct: 568 gaggagaggaaggccagcctc 588
>gb|BT000411.1| Arabidopsis thaliana putative ribosomal protein (At3g25520) mRNA, complete cds Length = 969 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 787 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 831 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 655 caaactcacttcagtgcttacatcaagaaagg 686
>emb|AJ890137.1| Murid Herpesvirus 2 r138 gene (partial), r139 gene, r140 gene, r141 gene and r142 gene (partial) Length = 7462 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 3360 cgacgatgacgaggatgacga 3340
>gb|BT008705.1| Arabidopsis thaliana At3g25520 gene, complete cds Length = 906 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 787 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 831 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 655 caaactcacttcagtgcttacatcaagaaagg 686
>gb|AY136319.1| Arabidopsis thaliana putative ribosomal protein (At3g25520) mRNA, complete cds Length = 1161 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 846 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 890 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 714 caaactcacttcagtgcttacatcaagaaagg 745
>gb|AY065103.1| Arabidopsis thaliana 60S ribosomal protein L5 (At3g25550) mRNA, complete cds Length = 1151 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 844 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 888 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 712 caaactcacttcagtgcttacatcaagaaagg 743
>gb|AY081701.1| Arabidopsis thaliana 60S ribosomal protein L5 (At3g25550) mRNA, complete cds Length = 925 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 787 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 831 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 655 caaactcacttcagtgcttacatcaagaaagg 686
>ref|NM_182489.1| Homo sapiens STRA8 (LOC346673), mRNA Length = 993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 gaggagaggaaggccagcctc 283 ||||||||||||||||||||| Sbjct: 568 gaggagaggaaggccagcctc 588
>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179363 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 13699 cgacgatgacgaggatgacga 13719
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163710 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 111746 cgacgatgacgaggatgacga 111766
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 190817 cgacgatgacgaggatgacga 190797
>ref|NM_132413.1| Drosophila melanogaster CG15295-RA (CG15295), mRNA Length = 2288 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 942 cgacgatgacgaggatgacga 962
>gb|AY054161.1| Arabidopsis thaliana AT5g39740/MKM21_30 mRNA, complete cds Length = 1108 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 834 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 878 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 702 caaactcacttcagtgcttacatcaagaaagg 733
>dbj|AK221847.1| Arabidopsis thaliana mRNA for ribosomal protein, complete cds, clone: RAFL22-05-O03 Length = 517 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 218 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 262 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 86 caaactcacttcagtgcttacatcaagaaagg 117
>gb|AY186611.1| Arabidopsis thaliana ribosomal protein L5 mRNA, complete cds Length = 906 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 787 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 831 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 655 caaactcacttcagtgcttacatcaagaaagg 686
>emb|BX823967.1|CNS0A6W1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH10ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1076 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 819 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 863 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 687 caaactcacttcagtgcttacatcaagaaagg 718
>gb|AY087197.1| Arabidopsis thaliana clone 32753 mRNA, complete sequence Length = 1248 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 849 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 893 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 717 caaactcacttcagtgcttacatcaagaaagg 748
>gb|BT002427.1| Arabidopsis thaliana ribosomal protein, putative (At3g25520) mRNA, complete cds Length = 1117 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 274 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 844 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 888 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 712 caaactcacttcagtgcttacatcaagaaagg 743
>dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2 Length = 84896 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 97 caaactcacttcagtgagtacatcaagnaagg 128 |||||||||||||||| ||||||||| |||| Sbjct: 56681 caaactcacttcagtgcttacatcaagaaagg 56650
>gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31, complete sequence Length = 160367 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 gaggagaggaaggccagcctc 283 ||||||||||||||||||||| Sbjct: 92668 gaggagaggaaggccagcctc 92688
>gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, complete sequence Length = 174768 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 gaggagaggaaggccagcctc 283 ||||||||||||||||||||| Sbjct: 89850 gaggagaggaaggccagcctc 89870
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 131000 cgacgatgacgaggatgacga 130980
>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence Length = 282600 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 115917 cgacgatgacgaggatgacga 115897
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence Length = 339089 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 cgacgatgacgaggatgacga 345 ||||||||||||||||||||| Sbjct: 129640 cgacgatgacgaggatgacga 129620
>dbj|AB049724.1| Pisum sativum ssa-15 mRNA for putative senescence-associated protein, complete cds Length = 1100 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 cacaagaggtacaaccccaagaagctcac 258 |||||||||||||||| ||||||||||| Sbjct: 849 cacaagaggtacaacctgaagaagctcac 877
>ref|NM_180473.1| Arabidopsis thaliana unknown protein AT5G10710 transcript variant AT5G10710.2 mRNA, complete cds Length = 1170 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggacctgttcctttctgtc 442 |||||||||||||||||||| Sbjct: 696 cggacctgttcctttctgtc 677
>ref|NM_121109.2| Arabidopsis thaliana unknown protein AT5G10710 transcript variant AT5G10710.1 mRNA, complete cds Length = 1270 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggacctgttcctttctgtc 442 |||||||||||||||||||| Sbjct: 796 cggacctgttcctttctgtc 777
>ref|XM_467072.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1424 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ctcagctgatgacatggaag 152 |||||||||||||||||||| Sbjct: 367 ctcagctgatgacatggaag 386
>gb|AC113006.9| Mus musculus chromosome 16, clone RP23-332O12, complete sequence Length = 195941 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aagggaatctcagctgatga 144 |||||||||||||||||||| Sbjct: 107276 aagggaatctcagctgatga 107257
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tgccgccgacgatgacgagg 338 |||||||||||||||||||| Sbjct: 302669 tgccgccgacgatgacgagg 302688
>ref|XM_754221.1| Ustilago maydis 521 hypothetical protein (UM03167.1) partial mRNA Length = 2610 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 gacgatgacgaggatgacga 345 |||||||||||||||||||| Sbjct: 1729 gacgatgacgaggatgacga 1748
>ref|XM_754531.1| Ustilago maydis 521 hypothetical protein (UM03477.1) partial mRNA Length = 3900 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 gacgatgacgaggatgacga 345 |||||||||||||||||||| Sbjct: 1000 gacgatgacgaggatgacga 1019
>ref|XM_380961.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00785.1) partial mRNA Length = 600 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 gacgatgacgaggatgacga 345 |||||||||||||||||||| Sbjct: 574 gacgatgacgaggatgacga 593
>gb|AF315713.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase mRNA, partial cds Length = 1767 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gccgccgacgatgacgagga 339 |||||||||||||||||||| Sbjct: 304 gccgccgacgatgacgagga 323
>emb|Z49967.1|CEF54C9 Caenorhabditis elegans Cosmid F54C9, complete sequence Length = 34842 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gcatgttgctgactacatga 63 |||||||||||||||||||| Sbjct: 16507 gcatgttgctgactacatga 16526
>gb|AC161114.4| Mus musculus BAC clone RP24-338A5 from chromosome 12, complete sequence Length = 220746 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 agaggctcaacgccctcaac 307 |||||||||||||||||||| Sbjct: 125841 agaggctcaacgccctcaac 125822
>emb|Z99296.2|SPAC3H5 S.pombe chromosome I cosmid c3H5 Length = 34284 Score = 40.1 bits (20), Expect = 7.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 23 ccgcaagtacatctatggagggcatgttgctgactacatg 62 |||||| || |||||||| || ||||||||||| |||||| Sbjct: 1246 ccgcaaatatatctatggtggccatgttgctgaatacatg 1285
>gb|AF360281.1| Arabidopsis thaliana unknown protein (At5g10710) mRNA, complete cds Length = 1285 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggacctgttcctttctgtc 442 |||||||||||||||||||| Sbjct: 795 cggacctgttcctttctgtc 776
>gb|AC164004.3| Mus musculus chromosome 5, clone RP23-58C20, complete sequence Length = 198872 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gacctgttcctttctgtctt 444 |||||||||||||||||||| Sbjct: 112971 gacctgttcctttctgtctt 112990
>gb|BC037840.2| Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 10, mRNA (cDNA clone IMAGE:4814643) Length = 1531 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tagcatggccaaatcaacca 212 |||||||||||||||||||| Sbjct: 466 tagcatggccaaatcaacca 447
>emb|AL031528.1|SPBC11C11 S.pombe chromosome II cosmid c11C11 Length = 22500 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 27 aagtacatctatggagggcatgttgctgactacatg 62 ||||| |||||||| || ||||||||||| |||||| Sbjct: 20250 aagtatatctatggtggtcatgttgctgaatacatg 20215
>gb|AY043490.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase (hmg1) mRNA, complete cds Length = 1827 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gccgccgacgatgacgagga 339 |||||||||||||||||||| Sbjct: 364 gccgccgacgatgacgagga 383
>gb|BC047625.1| Homo sapiens cDNA clone IMAGE:4795909 Length = 2187 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 gcagtttacaagaaggttcacgct 175 ||||||||||| |||||||||||| Sbjct: 1307 gcagtttacaataaggttcacgct 1284
>gb|BC036587.2| Homo sapiens cDNA clone IMAGE:4799072 Length = 2187 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 gcagtttacaagaaggttcacgct 175 ||||||||||| |||||||||||| Sbjct: 1307 gcagtttacaataaggttcacgct 1284
>gb|BC034036.1| Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 10, mRNA (cDNA clone IMAGE:4811633), partial cds Length = 4424 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tagcatggccaaatcaacca 212 |||||||||||||||||||| Sbjct: 3352 tagcatggccaaatcaacca 3333
>gb|AC100771.2| Homo sapiens chromosome 11, clone RP11-159H22, complete sequence Length = 177819 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 gcagtttacaagaaggttcacgct 175 |||||| ||||||||||||||||| Sbjct: 96318 gcagttcacaagaaggttcacgct 96341
>dbj|AB035927.1| Oryza sativa (japonica cultivar-group) GDH3 mRNA for glutamate dehydrogenase 3, complete cds Length = 1452 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ctcagctgatgacatggaag 152 |||||||||||||||||||| Sbjct: 393 ctcagctgatgacatggaag 412
>gb|AC026427.4| Homo sapiens chromosome 5 clone CTD-2193P3, complete sequence Length = 175838 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tttctgtcttgggtatcttg 454 |||||||||||||||||||| Sbjct: 53303 tttctgtcttgggtatcttg 53284
>ref|NM_001022319.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC11C11.09c), partial mRNA Length = 885 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 27 aagtacatctatggagggcatgttgctgactacatg 62 ||||| |||||||| || ||||||||||| |||||| Sbjct: 589 aagtatatctatggtggtcatgttgctgaatacatg 624
>gb|AY039230.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase (hmgr) mRNA, complete cds Length = 2301 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gccgccgacgatgacgagga 339 |||||||||||||||||||| Sbjct: 517 gccgccgacgatgacgagga 536
>ref|NM_001019604.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3H5.12c), partial mRNA Length = 885 Score = 40.1 bits (20), Expect = 7.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 23 ccgcaagtacatctatggagggcatgttgctgactacatg 62 |||||| || |||||||| || ||||||||||| |||||| Sbjct: 585 ccgcaaatatatctatggtggccatgttgctgaatacatg 624
>gb|AC020901.8|AC020901 Homo sapiens chromosome 5 clone CTC-527N11, complete sequence Length = 180636 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tttctgtcttgggtatcttg 454 |||||||||||||||||||| Sbjct: 161558 tttctgtcttgggtatcttg 161539
>ref|NM_063410.2| Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-5) (rpl-5) mRNA, complete cds Length = 969 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gcatgttgctgactacatga 63 |||||||||||||||||||| Sbjct: 611 gcatgttgctgactacatga 630
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 320 gccgccgacgatgacgaggatgacgagt 347 ||||||||||| |||||||| ||||||| Sbjct: 24219597 gccgccgacgacgacgaggaggacgagt 24219624
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ctcagctgatgacatggaag 152 |||||||||||||||||||| Sbjct: 26259363 ctcagctgatgacatggaag 26259382
>gb|DQ022844.1| Oryza sativa (japonica cultivar-group) cytochrome P450 mRNA, complete cds Length = 1719 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 320 gccgccgacgatgacgaggatgacgagt 347 ||||||||||| |||||||| ||||||| Sbjct: 576 gccgccgacgacgacgaggaggacgagt 549
>emb|BX830763.1|CNS09ZHR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZF05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1195 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggacctgttcctttctgtc 442 |||||||||||||||||||| Sbjct: 753 cggacctgttcctttctgtc 734
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 319 tgccgccgacgatgacgaggatgacgag 346 |||||||||||||||||| || |||||| Sbjct: 2243603 tgccgccgacgatgacgatgaagacgag 2243576
>gb|BT002314.1| Arabidopsis thaliana clone C104667 unknown protein (At5g10710) mRNA, complete cds Length = 970 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggacctgttcctttctgtc 442 |||||||||||||||||||| Sbjct: 596 cggacctgttcctttctgtc 577
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tcgagaggctcaacgccctc 304 |||||||||||||||||||| Sbjct: 433367 tcgagaggctcaacgccctc 433386
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0012J10 Length = 132375 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ctcagctgatgacatggaag 152 |||||||||||||||||||| Sbjct: 82204 ctcagctgatgacatggaag 82223
>gb|AE005004.1| Halobacterium sp. NRC-1 section 35 of 170 of the complete genome Length = 11030 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gccgccgacgatgacgagga 339 |||||||||||||||||||| Sbjct: 5077 gccgccgacgatgacgagga 5096
>dbj|AB125365.1| Corvus macrorhynchos DRD4 gene for dopamine receptor D4, exon 1, partial cds Length = 182 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 tgccgccgacgatgacgaggatga 342 ||||||||||||||| |||||||| Sbjct: 84 tgccgccgacgatgaggaggatga 61
>dbj|AK121238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096A02, full insert sequence Length = 1698 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 320 gccgccgacgatgacgaggatgacgagt 347 ||||||||||| |||||||| ||||||| Sbjct: 570 gccgccgacgacgacgaggaggacgagt 543
>dbj|AK103028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C02, full insert sequence Length = 1424 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ctcagctgatgacatggaag 152 |||||||||||||||||||| Sbjct: 367 ctcagctgatgacatggaag 386
>gb|AC102476.14| Mus musculus chromosome 5, clone RP24-396L12, complete sequence Length = 181047 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 gacctgttcctttctgtctt 444 |||||||||||||||||||| Sbjct: 168333 gacctgttcctttctgtctt 168314
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 320 gccgccgacgatgacgaggatgacgagt 347 ||||||||||| |||||||| ||||||| Sbjct: 24147803 gccgccgacgacgacgaggaggacgagt 24147830
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 320 gccgccgacgatgacgaggatgacgagt 347 ||||||||||| |||||||| ||||||| Sbjct: 104288 gccgccgacgacgacgaggaggacgagt 104315
>gb|U48270.1|SPU48270 Schizosaccharomyces pombe ribosomal protein L5 gene, complete cds Length = 1238 Score = 40.1 bits (20), Expect = 7.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 23 ccgcaagtacatctatggagggcatgttgctgactacatg 62 |||||| || |||||||| || ||||||||||| |||||| Sbjct: 621 ccgcaaatatatctatggtggccatgttgctgaatacatg 660
>emb|AL139194.7|CNS01DXB Human chromosome 14 DNA sequence BAC C-2190G12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157120 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 gcagtttacaagaaggttcacgct 175 ||||||||||| |||||||||||| Sbjct: 41675 gcagtttacaataaggttcacgct 41652
>dbj|AB016045.1| Schizosaccharomyces pombe mRNA for ribosomal protein L5 homolog, partial cds Length = 779 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 27 aagtacatctatggagggcatgttgctgactacatg 62 ||||| |||||||| || ||||||||||| |||||| Sbjct: 451 aagtatatctatggtggtcatgttgctgaatacatg 486 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,788,291 Number of Sequences: 3902068 Number of extensions: 3788291 Number of successful extensions: 68786 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68386 Number of HSP's gapped (non-prelim): 382 length of query: 539 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 516 effective length of database: 17,143,297,704 effective search space: 8845941615264 effective search space used: 8845941615264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)