ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9a19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184007.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2184 Score = 569 bits (287), Expect = e-159 Identities = 477/538 (88%), Gaps = 2/538 (0%) Strand = Plus / Plus Query: 1 acaccaatagtggttgggnaattgcactggtttcgcagtcaacaggnatgttctttcctt 60 |||||||||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 1462 acaccaatagtggttggg-aactgtaccggtttcgcagtcaacag-aatgttctttcctt 1519 Query: 61 acacccagtcagcactcctgtttgttgattatggtctggatgtttacaagatcgatcgtg 120 |||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||||||| Sbjct: 1520 acactcagtcagcactcctgttcgttgatcttggtatggatgtgtacaagatcgatcgtg 1579 Query: 121 catgtaccaaatttggaatgcccatgggtccattcaggcttgcagatcttgttggttttg 180 ||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||| Sbjct: 1580 catgtaccaaatttggaatgcccatgggtccattcagactggcagacctcgttggttttg 1639 Query: 181 gtgttgctgtggctactggtatgcagtaccttgaaaattttccggacagagtctacaagt 240 ||||||||| ||| |||||||||||||||||||| || || || || || |||||||||| Sbjct: 1640 gtgttgctgcggccactggtatgcagtaccttgagaacttcccagagagggtctacaagt 1699 Query: 241 ccatgctaatccctattatgatggaggacaaaagagcaggcgaagccagtcggaagggat 300 | ||| | || ||| ||||||||||||||||||| |||| || ||| ||||||||| | Sbjct: 1700 caatgttgattcctcttatgatggaggacaaaaggacaggtgaggcctctcggaagggct 1759 Query: 301 tttacaagtacgaggataagaggaaggcaactcctgatcctgaaattatgacgtatattc 360 |||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 1760 tttacaagtatgaggacaagaggaaggcaactcctgatcccgaaattatgaaatatattg 1819 Query: 361 agaaatctaggagcatggcaggagtcactccagacgctgagttgatgaagctaagtgaca 420 | ||||||||||| ||||| ||||| || |||||| |||||||||||||||||||||| | Sbjct: 1820 aaaaatctaggagtatggctggagtaacaccagacactgagttgatgaagctaagtgaga 1879 Query: 421 aggacatagttgagatggtgttcttcccggtcataaacgaagcgtgccgtgtccttgatg 480 ||||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||| Sbjct: 1880 aggacatagttgagatggtcttcttcccagtcataaatgaggcttgccgtgttcttgatg 1939 Query: 481 agggcattgcagtaaaggcgtcagatcttgacatcgcctcaatctttggcatgggatt 538 |||| |||||||| ||||| || || |||||||| ||||||||||||||||||||||| Sbjct: 1940 agggaattgcagtcaaggcttctgaccttgacattgcctcaatctttggcatgggatt 1997
>dbj|AK100444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090D07, full insert sequence Length = 2677 Score = 569 bits (287), Expect = e-159 Identities = 477/538 (88%), Gaps = 2/538 (0%) Strand = Plus / Plus Query: 1 acaccaatagtggttgggnaattgcactggtttcgcagtcaacaggnatgttctttcctt 60 |||||||||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 1678 acaccaatagtggttggg-aactgtaccggtttcgcagtcaacag-aatgttctttcctt 1735 Query: 61 acacccagtcagcactcctgtttgttgattatggtctggatgtttacaagatcgatcgtg 120 |||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||||||| Sbjct: 1736 acactcagtcagcactcctgttcgttgatcttggtatggatgtgtacaagatcgatcgtg 1795 Query: 121 catgtaccaaatttggaatgcccatgggtccattcaggcttgcagatcttgttggttttg 180 ||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||| Sbjct: 1796 catgtaccaaatttggaatgcccatgggtccattcagactggcagacctcgttggttttg 1855 Query: 181 gtgttgctgtggctactggtatgcagtaccttgaaaattttccggacagagtctacaagt 240 ||||||||| ||| |||||||||||||||||||| || || || || || |||||||||| Sbjct: 1856 gtgttgctgcggccactggtatgcagtaccttgagaacttcccagagagggtctacaagt 1915 Query: 241 ccatgctaatccctattatgatggaggacaaaagagcaggcgaagccagtcggaagggat 300 | ||| | || ||| ||||||||||||||||||| |||| || ||| ||||||||| | Sbjct: 1916 caatgttgattcctcttatgatggaggacaaaaggacaggtgaggcctctcggaagggct 1975 Query: 301 tttacaagtacgaggataagaggaaggcaactcctgatcctgaaattatgacgtatattc 360 |||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 1976 tttacaagtatgaggacaagaggaaggcaactcctgatcccgaaattatgaaatatattg 2035 Query: 361 agaaatctaggagcatggcaggagtcactccagacgctgagttgatgaagctaagtgaca 420 | ||||||||||| ||||| ||||| || |||||| |||||||||||||||||||||| | Sbjct: 2036 aaaaatctaggagtatggctggagtaacaccagacactgagttgatgaagctaagtgaga 2095 Query: 421 aggacatagttgagatggtgttcttcccggtcataaacgaagcgtgccgtgtccttgatg 480 ||||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||| Sbjct: 2096 aggacatagttgagatggtcttcttcccagtcataaatgaggcttgccgtgttcttgatg 2155 Query: 481 agggcattgcagtaaaggcgtcagatcttgacatcgcctcaatctttggcatgggatt 538 |||| |||||||| ||||| || || |||||||| ||||||||||||||||||||||| Sbjct: 2156 agggaattgcagtcaaggcttctgaccttgacattgcctcaatctttggcatgggatt 2213
>dbj|AK062168.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B11, full insert sequence Length = 1148 Score = 569 bits (287), Expect = e-159 Identities = 477/538 (88%), Gaps = 2/538 (0%) Strand = Plus / Plus Query: 1 acaccaatagtggttgggnaattgcactggtttcgcagtcaacaggnatgttctttcctt 60 |||||||||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 146 acaccaatagtggttggg-aactgtaccggtttcgcagtcaacag-aatgttctttcctt 203 Query: 61 acacccagtcagcactcctgtttgttgattatggtctggatgtttacaagatcgatcgtg 120 |||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||||||| Sbjct: 204 acactcagtcagcactcctgttcgttgatcttggtatggatgtgtacaagatcgatcgtg 263 Query: 121 catgtaccaaatttggaatgcccatgggtccattcaggcttgcagatcttgttggttttg 180 ||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||| Sbjct: 264 catgtaccaaatttggaatgcccatgggtccattcagactggcagacctcgttggttttg 323 Query: 181 gtgttgctgtggctactggtatgcagtaccttgaaaattttccggacagagtctacaagt 240 ||||||||| ||| |||||||||||||||||||| || || || || || |||||||||| Sbjct: 324 gtgttgctgcggccactggtatgcagtaccttgagaacttcccagagagggtctacaagt 383 Query: 241 ccatgctaatccctattatgatggaggacaaaagagcaggcgaagccagtcggaagggat 300 | ||| | || ||| ||||||||||||||||||| |||| || ||| ||||||||| | Sbjct: 384 caatgttgattcctcttatgatggaggacaaaaggacaggtgaggcctctcggaagggct 443 Query: 301 tttacaagtacgaggataagaggaaggcaactcctgatcctgaaattatgacgtatattc 360 |||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 444 tttacaagtatgaggacaagaggaaggcaactcctgatcccgaaattatgaaatatattg 503 Query: 361 agaaatctaggagcatggcaggagtcactccagacgctgagttgatgaagctaagtgaca 420 | ||||||||||| ||||| ||||| || |||||| |||||||||||||||||||||| | Sbjct: 504 aaaaatctaggagtatggctggagtaacaccagacactgagttgatgaagctaagtgaga 563 Query: 421 aggacatagttgagatggtgttcttcccggtcataaacgaagcgtgccgtgtccttgatg 480 ||||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||| Sbjct: 564 aggacatagttgagatggtcttcttcccagtcataaatgaggcttgccgtgttcttgatg 623 Query: 481 agggcattgcagtaaaggcgtcagatcttgacatcgcctcaatctttggcatgggatt 538 |||| |||||||| ||||| || || |||||||| ||||||||||||||||||||||| Sbjct: 624 agggaattgcagtcaaggcttctgaccttgacattgcctcaatctttggcatgggatt 681
>dbj|AK099063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157A11, full insert sequence Length = 941 Score = 474 bits (239), Expect = e-130 Identities = 389/439 (88%) Strand = Plus / Plus Query: 100 atgtttacaagatcgatcgtgcatgtaccaaatttggaatgcccatgggtccattcaggc 159 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1 atgtgtacaagatcgatcgtgcatgtaccaaatttggaatgcccatgggtccattcagac 60 Query: 160 ttgcagatcttgttggttttggtgttgctgtggctactggtatgcagtaccttgaaaatt 219 | ||||| || ||||||||||||||||||| ||| |||||||||||||||||||| || | Sbjct: 61 tggcagacctcgttggttttggtgttgctgcggccactggtatgcagtaccttgagaact 120 Query: 220 ttccggacagagtctacaagtccatgctaatccctattatgatggaggacaaaagagcag 279 | || || || ||||||||||| ||| | || ||| ||||||||||||||||||| ||| Sbjct: 121 tcccagagagggtctacaagtcaatgttgattcctcttatgatggaggacaaaaggacag 180 Query: 280 gcgaagccagtcggaagggattttacaagtacgaggataagaggaaggcaactcctgatc 339 | || ||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct: 181 gtgaggcctctcggaagggcttttacaagtatgaggacaagaggaaggcaactcctgatc 240 Query: 340 ctgaaattatgacgtatattcagaaatctaggagcatggcaggagtcactccagacgctg 399 | |||||||||| |||||| | ||||||||||| ||||| ||||| || |||||| ||| Sbjct: 241 ccgaaattatgaaatatattgaaaaatctaggagtatggctggagtaacaccagacactg 300 Query: 400 agttgatgaagctaagtgacaaggacatagttgagatggtgttcttcccggtcataaacg 459 ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| | Sbjct: 301 agttgatgaagctaagtgagaaggacatagttgagatggtcttcttcccagtcataaatg 360 Query: 460 aagcgtgccgtgtccttgatgagggcattgcagtaaaggcgtcagatcttgacatcgcct 519 | || |||||||| ||||||||||| |||||||| ||||| || || |||||||| |||| Sbjct: 361 aggcttgccgtgttcttgatgagggaattgcagtcaaggcttctgaccttgacattgcct 420 Query: 520 caatctttggcatgggatt 538 ||||||||||||||||||| Sbjct: 421 caatctttggcatgggatt 439
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 204 bits (103), Expect = 2e-49 Identities = 146/158 (92%), Gaps = 2/158 (1%) Strand = Plus / Plus Query: 1 acaccaatagtggttgggnaattgcactggtttcgcagtcaacaggnatgttctttcctt 60 |||||||||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 13874025 acaccaatagtggttggg-aactgtaccggtttcgcagtcaacag-aatgttctttcctt 13874082 Query: 61 acacccagtcagcactcctgtttgttgattatggtctggatgtttacaagatcgatcgtg 120 |||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||||||| Sbjct: 13874083 acactcagtcagcactcctgttcgttgatcttggtatggatgtgtacaagatcgatcgtg 13874142 Query: 121 catgtaccaaatttggaatgcccatgggtccattcagg 158 |||||||||||||||||||||||||||||||||||||| Sbjct: 13874143 catgtaccaaatttggaatgcccatgggtccattcagg 13874180 Score = 172 bits (87), Expect = 8e-40 Identities = 126/139 (90%) Strand = Plus / Plus Query: 400 agttgatgaagctaagtgacaaggacatagttgagatggtgttcttcccggtcataaacg 459 ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| | Sbjct: 13875109 agttgatgaagctaagtgagaaggacatagttgagatggtcttcttcccagtcataaatg 13875168 Query: 460 aagcgtgccgtgtccttgatgagggcattgcagtaaaggcgtcagatcttgacatcgcct 519 | || |||||||| ||||||||||| |||||||| ||||| || || |||||||| |||| Sbjct: 13875169 aggcttgccgtgttcttgatgagggaattgcagtcaaggcttctgaccttgacattgcct 13875228 Query: 520 caatctttggcatgggatt 538 ||||||||||||||||||| Sbjct: 13875229 caatctttggcatgggatt 13875247 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Plus Query: 290 tcggaagggattttacaagtacgaggataagaggaaggcaactcctgatcctgaaattat 349 ||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 13874552 tcggaagggcttttacaagtatgaggacaagaggaaggcaactcctgatcccgaaattat 13874611 Query: 350 gacgtatattcagaaatctaggagcatggcaggagtcactccagacgctgag 401 || |||||| | ||||||||||| ||||| ||||| || |||||| ||||| Sbjct: 13874612 gaaatatattgaaaaatctaggagtatggctggagtaacaccagacactgag 13874663 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 162 gcagatcttgttggttttggtgttgctgtggctactggtatgcagtaccttgaaaatttt 221 ||||| || ||||||||||||||||||| ||| |||||||||||||||||||| || || Sbjct: 13874316 gcagacctcgttggttttggtgttgctgcggccactggtatgcagtaccttgagaacttc 13874375 Query: 222 ccggacagagtctacaagtccatgctaatccctattatgatggaggacaaaag 274 || || || ||||||||||| ||| | || ||| ||||||||||||||||||| Sbjct: 13874376 ccagagagggtctacaagtcaatgttgattcctcttatgatggaggacaaaag 13874428
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 204 bits (103), Expect = 2e-49 Identities = 146/158 (92%), Gaps = 2/158 (1%) Strand = Plus / Plus Query: 1 acaccaatagtggttgggnaattgcactggtttcgcagtcaacaggnatgttctttcctt 60 |||||||||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 34327 acaccaatagtggttggg-aactgtaccggtttcgcagtcaacag-aatgttctttcctt 34384 Query: 61 acacccagtcagcactcctgtttgttgattatggtctggatgtttacaagatcgatcgtg 120 |||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||||||| Sbjct: 34385 acactcagtcagcactcctgttcgttgatcttggtatggatgtgtacaagatcgatcgtg 34444 Query: 121 catgtaccaaatttggaatgcccatgggtccattcagg 158 |||||||||||||||||||||||||||||||||||||| Sbjct: 34445 catgtaccaaatttggaatgcccatgggtccattcagg 34482 Score = 172 bits (87), Expect = 8e-40 Identities = 126/139 (90%) Strand = Plus / Plus Query: 400 agttgatgaagctaagtgacaaggacatagttgagatggtgttcttcccggtcataaacg 459 ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| | Sbjct: 35411 agttgatgaagctaagtgagaaggacatagttgagatggtcttcttcccagtcataaatg 35470 Query: 460 aagcgtgccgtgtccttgatgagggcattgcagtaaaggcgtcagatcttgacatcgcct 519 | || |||||||| ||||||||||| |||||||| ||||| || || |||||||| |||| Sbjct: 35471 aggcttgccgtgttcttgatgagggaattgcagtcaaggcttctgaccttgacattgcct 35530 Query: 520 caatctttggcatgggatt 538 ||||||||||||||||||| Sbjct: 35531 caatctttggcatgggatt 35549 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Plus Query: 290 tcggaagggattttacaagtacgaggataagaggaaggcaactcctgatcctgaaattat 349 ||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 34854 tcggaagggcttttacaagtatgaggacaagaggaaggcaactcctgatcccgaaattat 34913 Query: 350 gacgtatattcagaaatctaggagcatggcaggagtcactccagacgctgag 401 || |||||| | ||||||||||| ||||| ||||| || |||||| ||||| Sbjct: 34914 gaaatatattgaaaaatctaggagtatggctggagtaacaccagacactgag 34965 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 162 gcagatcttgttggttttggtgttgctgtggctactggtatgcagtaccttgaaaatttt 221 ||||| || ||||||||||||||||||| ||| |||||||||||||||||||| || || Sbjct: 34618 gcagacctcgttggttttggtgttgctgcggccactggtatgcagtaccttgagaacttc 34677 Query: 222 ccggacagagtctacaagtccatgctaatccctattatgatggaggacaaaag 274 || || || ||||||||||| ||| | || ||| ||||||||||||||||||| Sbjct: 34678 ccagagagggtctacaagtcaatgttgattcctcttatgatggaggacaaaag 34730
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 204 bits (103), Expect = 2e-49 Identities = 146/158 (92%), Gaps = 2/158 (1%) Strand = Plus / Plus Query: 1 acaccaatagtggttgggnaattgcactggtttcgcagtcaacaggnatgttctttcctt 60 |||||||||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 111428 acaccaatagtggttggg-aactgtaccggtttcgcagtcaacag-aatgttctttcctt 111485 Query: 61 acacccagtcagcactcctgtttgttgattatggtctggatgtttacaagatcgatcgtg 120 |||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||||||| Sbjct: 111486 acactcagtcagcactcctgttcgttgatcttggtatggatgtgtacaagatcgatcgtg 111545 Query: 121 catgtaccaaatttggaatgcccatgggtccattcagg 158 |||||||||||||||||||||||||||||||||||||| Sbjct: 111546 catgtaccaaatttggaatgcccatgggtccattcagg 111583 Score = 172 bits (87), Expect = 8e-40 Identities = 126/139 (90%) Strand = Plus / Plus Query: 400 agttgatgaagctaagtgacaaggacatagttgagatggtgttcttcccggtcataaacg 459 ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| | Sbjct: 112512 agttgatgaagctaagtgagaaggacatagttgagatggtcttcttcccagtcataaatg 112571 Query: 460 aagcgtgccgtgtccttgatgagggcattgcagtaaaggcgtcagatcttgacatcgcct 519 | || |||||||| ||||||||||| |||||||| ||||| || || |||||||| |||| Sbjct: 112572 aggcttgccgtgttcttgatgagggaattgcagtcaaggcttctgaccttgacattgcct 112631 Query: 520 caatctttggcatgggatt 538 ||||||||||||||||||| Sbjct: 112632 caatctttggcatgggatt 112650 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Plus Query: 290 tcggaagggattttacaagtacgaggataagaggaaggcaactcctgatcctgaaattat 349 ||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 111955 tcggaagggcttttacaagtatgaggacaagaggaaggcaactcctgatcccgaaattat 112014 Query: 350 gacgtatattcagaaatctaggagcatggcaggagtcactccagacgctgag 401 || |||||| | ||||||||||| ||||| ||||| || |||||| ||||| Sbjct: 112015 gaaatatattgaaaaatctaggagtatggctggagtaacaccagacactgag 112066 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 162 gcagatcttgttggttttggtgttgctgtggctactggtatgcagtaccttgaaaatttt 221 ||||| || ||||||||||||||||||| ||| |||||||||||||||||||| || || Sbjct: 111719 gcagacctcgttggttttggtgttgctgcggccactggtatgcagtaccttgagaacttc 111778 Query: 222 ccggacagagtctacaagtccatgctaatccctattatgatggaggacaaaag 274 || || || ||||||||||| ||| | || ||| ||||||||||||||||||| Sbjct: 111779 ccagagagggtctacaagtcaatgttgattcctcttatgatggaggacaaaag 111831
>gb|AY109470.1| Zea mays CL2102_5 mRNA sequence Length = 1160 Score = 121 bits (61), Expect = 2e-24 Identities = 140/168 (83%) Strand = Plus / Minus Query: 368 taggagcatggcaggagtcactccagacgctgagttgatgaagctaagtgacaaggacat 427 |||||||||||||||||| || ||||| ||||| |||||||||||||||| || ||||| Sbjct: 487 taggagcatggcaggagttacaccagatcctgagctgatgaagctaagtgagaaagacat 428 Query: 428 agttgagatggtgttcttcccggtcataaacgaagcgtgccgtgtccttgatgagggcat 487 ||| ||||||||| |||||| ||||| ||||| ||||| |||||||||||||| || Sbjct: 427 agtcgagatggtgnnnnncccggtgataaatgaagcctgccgagtccttgatgagggtat 368 Query: 488 tgcagtaaaggcgtcagatcttgacatcgcctcaatctttggcatggg 535 || || ||||| || || || |||||||| || ||||| |||||||| Sbjct: 367 cgccgtcaaggcttctgacctagacatcgcttcgatcttcggcatggg 320 Score = 52.0 bits (26), Expect = 0.002 Identities = 66/81 (81%) Strand = Plus / Minus Query: 261 atggaggacaaaagagcaggcgaagccagtcggaagggattttacaagtacgaggataag 320 ||||||||||| || ||||| ||||||| | |||||||||||||| |||| ||| Sbjct: 594 atggaggacaatagggcaggtgaagccacccnnnnnggattttacaagtatgagggcaag 535 Query: 321 aggaaggcaactcctgatcct 341 ||||| || |||||||||||| Sbjct: 534 aggaaagcgactcctgatcct 514
>ref|NM_185270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2151 Score = 79.8 bits (40), Expect = 8e-12 Identities = 198/248 (79%), Gaps = 2/248 (0%) Strand = Plus / Plus Query: 97 tggatgtttacaagatcgatcgtgcatgtaccaaatttggaatgcccatgggtccattca 156 |||||||||||||||| |||| | |||||| ||||||| ||||| ||||||||||||| Sbjct: 1520 tggatgtttacaagattgatcaagtttgtaccgaatttgggatgccaatgggtccattca 1579 Query: 157 ggcttgc-agatcttgttggttttggtgttgctgtggctactggtatgcagtaccttgaa 215 | |||| ||| || ||||| ||||| || ||| | || |||| |||||||||||||| Sbjct: 1580 ga-ttgctagacctggttgggtttggagtagctcttgcctctggcatgcagtaccttgag 1638 Query: 216 aattttccggacagagtctacaagtccatgctaatccctattatgatggaggacaaaaga 275 || | || | || ||| ||||||| |||||||| ||| | ||| | || |||||||| Sbjct: 1639 aactcccccgggagtgtcgacaagtcaatgctaattcctctcatgtttgaagacaaaagg 1698 Query: 276 gcaggcgaagccagtcggaagggattttacaagtacgaggataagaggaaggcaactcct 335 ||||||||||| || ||||||||||||||||| |||| ||| ||||||| | ||| Sbjct: 1699 acaggcgaagcctctcaaaagggattttacaagtatgagggtaatcggaaggccatccct 1758 Query: 336 gatcctga 343 |||||||| Sbjct: 1759 gatcctga 1766 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 417 gacaaggacatagttgagatggtgttcttcccggtcataaacgaagcgtgccgtgtcctt 476 |||||||| ||||| ||||||||||||||||| || || ||||| || |||| ||||| Sbjct: 1840 gacaaggaaatagtggagatggtgttcttccctgttatcaacgaggcctgccaggtcctc 1899 Query: 477 gatgagggcattgcagtaaaggcgtcagatcttgacatcgcctcaatctttggcatggga 536 |||||||||||| || || || || || ||||||||||||||||| ||||||||| Sbjct: 1900 agtgagggcattgccaacaaagcctcggacctcgacatcgcctcaatcttcggcatggga 1959 Query: 537 tt 538 || Sbjct: 1960 tt 1961
>dbj|AK102420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D14, full insert sequence Length = 2757 Score = 79.8 bits (40), Expect = 8e-12 Identities = 198/248 (79%), Gaps = 2/248 (0%) Strand = Plus / Plus Query: 97 tggatgtttacaagatcgatcgtgcatgtaccaaatttggaatgcccatgggtccattca 156 |||||||||||||||| |||| | |||||| ||||||| ||||| ||||||||||||| Sbjct: 1779 tggatgtttacaagattgatcaagtttgtaccgaatttgggatgccaatgggtccattca 1838 Query: 157 ggcttgc-agatcttgttggttttggtgttgctgtggctactggtatgcagtaccttgaa 215 | |||| ||| || ||||| ||||| || ||| | || |||| |||||||||||||| Sbjct: 1839 ga-ttgctagacctggttgggtttggagtagctcttgcctctggcatgcagtaccttgag 1897 Query: 216 aattttccggacagagtctacaagtccatgctaatccctattatgatggaggacaaaaga 275 || | || | || ||| ||||||| |||||||| ||| | ||| | || |||||||| Sbjct: 1898 aactcccccgggagtgtcgacaagtcaatgctaattcctctcatgtttgaagacaaaagg 1957 Query: 276 gcaggcgaagccagtcggaagggattttacaagtacgaggataagaggaaggcaactcct 335 ||||||||||| || ||||||||||||||||| |||| ||| ||||||| | ||| Sbjct: 1958 acaggcgaagcctctcaaaagggattttacaagtatgagggtaatcggaaggccatccct 2017 Query: 336 gatcctga 343 |||||||| Sbjct: 2018 gatcctga 2025 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 417 gacaaggacatagttgagatggtgttcttcccggtcataaacgaagcgtgccgtgtcctt 476 |||||||| ||||| ||||||||||||||||| || || ||||| || |||| ||||| Sbjct: 2099 gacaaggaaatagtggagatggtgttcttccctgttatcaacgaggcctgccaggtcctc 2158 Query: 477 gatgagggcattgcagtaaaggcgtcagatcttgacatcgcctcaatctttggcatggga 536 |||||||||||| || || || || || ||||||||||||||||| ||||||||| Sbjct: 2159 agtgagggcattgccaacaaagcctcggacctcgacatcgcctcaatcttcggcatggga 2218 Query: 537 tt 538 || Sbjct: 2219 tt 2220
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Minus Query: 417 gacaaggacatagttgagatggtgttcttcccggtcataaacgaagcgtgccgtgtcctt 476 |||||||| ||||| ||||||||||||||||| || || ||||| || |||| ||||| Sbjct: 38307 gacaaggaaatagtggagatggtgttcttccctgttatcaacgaggcctgccaggtcctc 38248 Query: 477 gatgagggcattgcagtaaaggcgtcagatcttgacatcgcctcaatctttggcatggga 536 |||||||||||| || || || || || ||||||||||||||||| ||||||||| Sbjct: 38247 agtgagggcattgccaacaaagcctcggacctcgacatcgcctcaatcttcggcatggga 38188 Query: 537 tt 538 || Sbjct: 38187 tt 38186 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 97 tggatgtttacaagatcgatcgtgcatgtaccaaatttggaatgcccatgggtccattca 156 |||||||||||||||| |||| | |||||| ||||||| ||||| ||||||||||||| Sbjct: 39556 tggatgtttacaagattgatcaagtttgtaccgaatttgggatgccaatgggtccattca 39497 Query: 157 gg 158 || Sbjct: 39496 gg 39495 Score = 48.1 bits (24), Expect = 0.030 Identities = 57/68 (83%) Strand = Plus / Minus Query: 276 gcaggcgaagccagtcggaagggattttacaagtacgaggataagaggaaggcaactcct 335 |||||||||||| || ||||||||||||||||| |||| ||| ||||||| | ||| Sbjct: 38894 gcaggcgaagcctctcaaaagggattttacaagtatgagggtaatcggaaggccatccct 38835 Query: 336 gatcctga 343 |||||||| Sbjct: 38834 gatcctga 38827
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Minus Query: 417 gacaaggacatagttgagatggtgttcttcccggtcataaacgaagcgtgccgtgtcctt 476 |||||||| ||||| ||||||||||||||||| || || ||||| || |||| ||||| Sbjct: 3160590 gacaaggaaatagtggagatggtgttcttccctgttatcaacgaggcctgccaggtcctc 3160531 Query: 477 gatgagggcattgcagtaaaggcgtcagatcttgacatcgcctcaatctttggcatggga 536 |||||||||||| || || || || || ||||||||||||||||| ||||||||| Sbjct: 3160530 agtgagggcattgccaacaaagcctcggacctcgacatcgcctcaatcttcggcatggga 3160471 Query: 537 tt 538 || Sbjct: 3160470 tt 3160469 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 97 tggatgtttacaagatcgatcgtgcatgtaccaaatttggaatgcccatgggtccattca 156 |||||||||||||||| |||| | |||||| ||||||| ||||| ||||||||||||| Sbjct: 3161839 tggatgtttacaagattgatcaagtttgtaccgaatttgggatgccaatgggtccattca 3161780 Query: 157 gg 158 || Sbjct: 3161779 gg 3161778 Score = 48.1 bits (24), Expect = 0.030 Identities = 57/68 (83%) Strand = Plus / Minus Query: 276 gcaggcgaagccagtcggaagggattttacaagtacgaggataagaggaaggcaactcct 335 |||||||||||| || ||||||||||||||||| |||| ||| ||||||| | ||| Sbjct: 3161177 gcaggcgaagcctctcaaaagggattttacaagtatgagggtaatcggaaggccatccct 3161118 Query: 336 gatcctga 343 |||||||| Sbjct: 3161117 gatcctga 3161110 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 ttgttgattatggtctggatgt 103 |||||||||||||||||||||| Sbjct: 17149456 ttgttgattatggtctggatgt 17149477 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gatcttgttggttttggtgttgct 188 ||||||||||||||||| |||||| Sbjct: 17150426 gatcttgttggttttggagttgct 17150449
>emb|AJ719186.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT33-1-505, cultivar Bright Yellow 2 Length = 564 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 23 tgcactggtttcgcagtcaacaggnatgttctttccttacaccca 67 ||||||||||| || |||||||| |||||||||||||||||||| Sbjct: 304 tgcactggttttgctgtcaacag-aatgttctttccttacaccca 261 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 165 gatcttgttggttttggtgttgc 187 ||||||||||||||||||||||| Sbjct: 163 gatcttgttggttttggtgttgc 141
>ref|XM_475119.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2175 Score = 46.1 bits (23), Expect = 0.12 Identities = 86/107 (80%) Strand = Plus / Plus Query: 82 ttgttgattatggtctggatgtttacaagatcgatcgtgcatgtaccaaatttggaatgc 141 |||||||||||||||||||||| ||| | || || | || ||| || |||||||||| Sbjct: 1532 ttgttgattatggtctggatgtctaccacatagaccatgtgattacaaagtttggaatgc 1591 Query: 142 ccatgggtccattcaggcttgcagatcttgttggttttggtgttgct 188 | ||||| || ||| | | || ||||||||||||||||| |||||| Sbjct: 1592 caatgggacctttccgattagctgatcttgttggttttggagttgct 1638
>gb|BT014107.1| Lycopersicon esculentum clone 133211F, mRNA sequence Length = 2510 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 gatcttgttggttttggtgttgc 187 ||||||||||||||||||||||| Sbjct: 1687 gatcttgttggttttggtgttgc 1709 Score = 42.1 bits (21), Expect = 1.8 Identities = 52/60 (86%), Gaps = 2/60 (3%) Strand = Plus / Plus Query: 8 tagtggttgggnaattgcactggtttcgcagtcaacaggnatgttctttccttacaccca 67 ||||||||||| || ||||||||||| || || || || |||||||||||||||||||| Sbjct: 1532 tagtggttggg-aactgcactggttttgctgtgaatag-aatgttctttccttacaccca 1589
>dbj|AK100115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006O04, full insert sequence Length = 2501 Score = 46.1 bits (23), Expect = 0.12 Identities = 86/107 (80%) Strand = Plus / Plus Query: 82 ttgttgattatggtctggatgtttacaagatcgatcgtgcatgtaccaaatttggaatgc 141 |||||||||||||||||||||| ||| | || || | || ||| || |||||||||| Sbjct: 1636 ttgttgattatggtctggatgtctaccacatagaccatgtgattacaaagtttggaatgc 1695 Query: 142 ccatgggtccattcaggcttgcagatcttgttggttttggtgttgct 188 | ||||| || ||| | | || ||||||||||||||||| |||||| Sbjct: 1696 caatgggacctttccgattagctgatcttgttggttttggagttgct 1742
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 ttgttgattatggtctggatgt 103 |||||||||||||||||||||| Sbjct: 93591 ttgttgattatggtctggatgt 93612 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gatcttgttggttttggtgttgct 188 ||||||||||||||||| |||||| Sbjct: 94561 gatcttgttggttttggagttgct 94584
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 ttgttgattatggtctggatgt 103 |||||||||||||||||||||| Sbjct: 142823 ttgttgattatggtctggatgt 142844 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gatcttgttggttttggtgttgct 188 ||||||||||||||||| |||||| Sbjct: 143793 gatcttgttggttttggagttgct 143816
>ref|XM_968047.1| PREDICTED: Tribolium castaneum similar to CG9749-PA (LOC661917), mRNA Length = 1634 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 ttgttggttttggtgttgctgt 190 |||||||||||||||||||||| Sbjct: 1088 ttgttggttttggtgttgctgt 1067
>gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosome 14, complete sequence Length = 211243 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 348 atgacgtatattcagaaatcta 369 |||||||||||||||||||||| Sbjct: 192824 atgacgtatattcagaaatcta 192845
>gb|AC153563.3| Mus musculus 10 BAC RP23-455D21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 171018 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 328 caactcctgatcctgaaatta 348 ||||||||||||||||||||| Sbjct: 94465 caactcctgatcctgaaatta 94485
>ref|NM_119678.1| Arabidopsis thaliana unknown protein AT4G35120 mRNA, complete cds Length = 1170 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 agtacgaggataagaggaag 326 |||||||||||||||||||| Sbjct: 348 agtacgaggataagaggaag 329
>ref|XM_637933.1| Dictyostelium discoideum hypothetical protein (DDB0202946), partial mRNA Length = 3117 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tgttggttttggtgttgctg 189 |||||||||||||||||||| Sbjct: 1553 tgttggttttggtgttgctg 1534
>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete sequence Length = 206003 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttgatgaagctaagtgacaa 421 |||||||||||||||||||| Sbjct: 131042 ttgatgaagctaagtgacaa 131061
>gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosome 13, complete sequence Length = 199388 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 cactccagacgctgagttgatgaa 409 |||||||||||||||||| ||||| Sbjct: 125712 cactccagacgctgagtttatgaa 125689
>emb|AL928688.3| Human DNA sequence from clone RP11-77N10 on chromosome 10, complete sequence Length = 165910 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tatattcagaaatctaggag 373 |||||||||||||||||||| Sbjct: 27643 tatattcagaaatctaggag 27662
>emb|AL591051.7| Human DNA sequence from clone RP11-613I8 on chromosome 6 Contains a CpG island, complete sequence Length = 128615 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ttgttggttttggtgttgct 188 |||||||||||||||||||| Sbjct: 85346 ttgttggttttggtgttgct 85365
>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82 Length = 195165 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 agtacgaggataagaggaag 326 |||||||||||||||||||| Sbjct: 171933 agtacgaggataagaggaag 171914
>emb|AL035522.1|ATT12J5 Arabidopsis thaliana DNA chromosome 4, BAC clone T12J5 (ESSAII project) Length = 84499 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 agtacgaggataagaggaag 326 |||||||||||||||||||| Sbjct: 42011 agtacgaggataagaggaag 41992
>emb|AL022023.1|ATM4E13 Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project) Length = 80346 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 agtacgaggataagaggaag 326 |||||||||||||||||||| Sbjct: 72966 agtacgaggataagaggaag 72947
>emb|AL592222.11| Mouse DNA sequence from clone RP23-366M19 on chromosome 11 Contains a ribosomal protein L13a (Rpl13a) pseudogene, the 5' end of a novel gene, the gene for peptidyl-tRNA hydrolase 2, mitochondrial precursor (PTH2), the Cltc gene for clathrin heavy polypeptide (Hc) and the 3' end of the Dhx40 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 40, complete sequence Length = 160796 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 tcttgttggttttggtgttg 186 |||||||||||||||||||| Sbjct: 156439 tcttgttggttttggtgttg 156458
>gb|AC023682.4| Drosophila melanogaster X BAC RP98-7F10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179236 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tgttggttttggtgttgctg 189 |||||||||||||||||||| Sbjct: 67268 tgttggttttggtgttgctg 67249
>ref|NM_132068.1| Drosophila melanogaster Ca-1T CG15899-RB (Ca-alpha1T), mRNA Length = 8789 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tgttggttttggtgttgctg 189 |||||||||||||||||||| Sbjct: 1672 tgttggttttggtgttgctg 1653
>gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold Length = 347743 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ttgattatggtctggatgtt 104 |||||||||||||||||||| Sbjct: 255062 ttgattatggtctggatgtt 255043
>gb|AF371282.1|AH010774S2 Drosophila melanogaster voltage-dependent calcium channel alpha13 subunit mRNA, partial cds Length = 1795 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tgttggttttggtgttgctg 189 |||||||||||||||||||| Sbjct: 492 tgttggttttggtgttgctg 473
>gb|AC104753.10| Mus musculus chromosome 7, clone RP24-168P9, complete sequence Length = 183931 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttacacccagtcagcactcc 78 |||||||||||||||||||| Sbjct: 103575 ttacacccagtcagcactcc 103594
>gb|AF275633.1|AF275633 Phanerochaete chrysosporium lipG/lipH intergenic region Length = 5242 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 gtgtccttgatgagggcatt 488 |||||||||||||||||||| Sbjct: 5038 gtgtccttgatgagggcatt 5019
>gb|AE003436.3| Drosophila melanogaster chromosome X, section 20 of 74 of the complete sequence Length = 317322 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tgttggttttggtgttgctg 189 |||||||||||||||||||| Sbjct: 209365 tgttggttttggtgttgctg 209384
>gb|AC153547.3| Mus musculus 10 BAC RP23-429B12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206024 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ttgttgattatggtctggat 101 |||||||||||||||||||| Sbjct: 157472 ttgttgattatggtctggat 157453 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,158,296 Number of Sequences: 3902068 Number of extensions: 4158296 Number of successful extensions: 79857 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79648 Number of HSP's gapped (non-prelim): 196 length of query: 538 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 515 effective length of database: 17,143,297,704 effective search space: 8828798317560 effective search space used: 8828798317560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
