ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9a15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA 361 2e-96
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 361 2e-96
3dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D... 361 2e-96
4dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 345 1e-91
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 1e-13
6gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 86 1e-13
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
8dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
9dbj|AK063754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
10ref|NM_204276.1| Gallus gallus breast cancer 2, early onset (BRC... 48 0.031
11gb|AY083934.1| Gallus gallus breast cancer susceptibility protei... 48 0.031
12dbj|AB066374.1| Gallus gallus brca2 mRNA for tumor suppressor BR... 48 0.031
13ref|NM_101582.2| Arabidopsis thaliana unknown protein AT1G17210 ... 42 1.9
14gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 geno... 42 1.9
15emb|AL162851.10| Human DNA sequence from clone RP11-186M12 on ch... 42 1.9
16dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 42 1.9
17emb|BX072566.10| Human DNA sequence from clone RP11-25L22 on chr... 42 1.9
18dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, ... 42 1.9
19emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004 42 1.9
20emb|AL050303.4|HS214G14 Homo sapiens chromosome 21 PAC RPCIP704G... 42 1.9
21emb|BX901974.11| Zebrafish DNA sequence from clone DKEY-30F3 in ... 42 1.9
22dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.9
23gb|AC114825.4| Mus musculus BAC clone RP24-104P22 from chromosom... 40 7.6
24emb|CR956377.9| Pig DNA sequence from clone PigE-220E19 on chrom... 40 7.6
25emb|CR956388.7| Pig DNA sequence from clone PigI-736G5 on chromo... 40 7.6
26gb|AC163009.2| Mus musculus chromosome 1, clone RP23-268A12, com... 40 7.6
27gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, c... 40 7.6
28dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 7.6
29gb|AC004615.1|AC004615 Homo sapiens BAC clone GS1-405L21 from 5p... 40 7.6
30gb|AC147186.3| Mus musculus BAC clone RP24-112I5 from 3, complet... 40 7.6 
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3250

 Score =  361 bits (182), Expect = 2e-96
 Identities = 269/298 (90%)
 Strand = Plus / Plus

                                                                        
Query: 5    cctgcttttgctagggatcaacttagccttggagttagtggaggcagtgttggaatgggt 64
            ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 2103 cctgcttttgctagggaccaactaagcctgggagttagtggagggagtgttggtatgggt 2162

                                                                        
Query: 65   gctagtcatgaagccgaaattcacggagtcgagatttctggacataaaactgagagcgtt 124
            ||||||||||||||||||||||| ||||| ||  ||||||  ||||||||||| || |||
Sbjct: 2163 gctagtcatgaagccgaaattcatggagttgatgtttctgagcataaaactgatagtgtt 2222

                                                                        
Query: 125  gttggagatgtggaaccagttcccgagcttactgaaaccatgggtcatactggtgagtca 184
            ||||||||||||||||||| |||||||||||||||||  |||||  ||||||||||||||
Sbjct: 2223 gttggagatgtggaaccagctcccgagcttactgaaaatatgggcaatactggtgagtca 2282

                                                                        
Query: 185  gctcctggacctggaatgatggatgagtttgtccctgaggatgctggtcgagaagagcct 244
            || ||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||
Sbjct: 2283 gcccctggacctggaatgatggatgagtttgtccctgaagatgttggccgagaagaacct 2342

                                                                      
Query: 245  cagggtgatagccacgatgtggcatctcagttagtgggtcgagtggacagtggttcaa 302
            |||||||||||||| ||||||||||||| |||||||||| |||  |||||||| ||||
Sbjct: 2343 cagggtgatagccaagatgtggcatctcggttagtgggtagagctgacagtggctcaa 2400



 Score =  202 bits (102), Expect = 9e-49
 Identities = 227/268 (84%), Gaps = 3/268 (1%)
 Strand = Plus / Plus

                                                                        
Query: 294  gtggttcaactaaagctgattcggtcgagagtggagagaagatgagccatgccagaggcc 353
            |||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct: 2407 gtggttcaactaaagctgattctgttgagagtggagagaagatgagccatggcataggtc 2466

                                                                        
Query: 354  aggagagtaacctgcaacattccctttcttgcaatgcaagagtttattctggcattgatt 413
            | ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||| 
Sbjct: 2467 atgagagtaacctacagcattccctttctcgcaatgctagagtttattctggcattgatc 2526

                                                                        
Query: 414  tatctaaagatgaagtgacccagactggtaaaatgctgacgaaggacgagtatgacccag 473
            | ||||||||||| ||||| |||| || |||| |||   | || ||||| ||||| ||||
Sbjct: 2527 tgtctaaagatgaggtgacacagattgctaaattgccagcaaatgacgactatgatccag 2586

                                                                        
Query: 474  gaaatgatcttggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttg 533
            || ||||||||| ||||   || |||| |||||| | |||| | ||||||||||| ||||
Sbjct: 2587 gagatgatcttgcagca---aacgggggaaatgactatgaagcaggtcttccagaatttg 2643

                                        
Query: 534  atccaatcaagcatcacaacaactattg 561
            | ||||| |  ||||||||||| |||||
Sbjct: 2644 acccaattagtcatcacaacaattattg 2671
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  361 bits (182), Expect = 2e-96
 Identities = 269/298 (90%)
 Strand = Plus / Minus

                                                                           
Query: 5       cctgcttttgctagggatcaacttagccttggagttagtggaggcagtgttggaatgggt 64
               ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 2668244 cctgcttttgctagggaccaactaagcctgggagttagtggagggagtgttggtatgggt 2668185

                                                                           
Query: 65      gctagtcatgaagccgaaattcacggagtcgagatttctggacataaaactgagagcgtt 124
               ||||||||||||||||||||||| ||||| ||  ||||||  ||||||||||| || |||
Sbjct: 2668184 gctagtcatgaagccgaaattcatggagttgatgtttctgagcataaaactgatagtgtt 2668125

                                                                           
Query: 125     gttggagatgtggaaccagttcccgagcttactgaaaccatgggtcatactggtgagtca 184
               ||||||||||||||||||| |||||||||||||||||  |||||  ||||||||||||||
Sbjct: 2668124 gttggagatgtggaaccagctcccgagcttactgaaaatatgggcaatactggtgagtca 2668065

                                                                           
Query: 185     gctcctggacctggaatgatggatgagtttgtccctgaggatgctggtcgagaagagcct 244
               || ||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||
Sbjct: 2668064 gcccctggacctggaatgatggatgagtttgtccctgaagatgttggccgagaagaacct 2668005

                                                                         
Query: 245     cagggtgatagccacgatgtggcatctcagttagtgggtcgagtggacagtggttcaa 302
               |||||||||||||| ||||||||||||| |||||||||| |||  |||||||| ||||
Sbjct: 2668004 cagggtgatagccaagatgtggcatctcggttagtgggtagagctgacagtggctcaa 2667947



 Score =  184 bits (93), Expect = 2e-43
 Identities = 168/193 (87%)
 Strand = Plus / Minus

                                                                           
Query: 294     gtggttcaactaaagctgattcggtcgagagtggagagaagatgagccatgccagaggcc 353
               |||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct: 2667940 gtggttcaactaaagctgattctgttgagagtggagagaagatgagccatggcataggtc 2667881

                                                                           
Query: 354     aggagagtaacctgcaacattccctttcttgcaatgcaagagtttattctggcattgatt 413
               | ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||| 
Sbjct: 2667880 atgagagtaacctacagcattccctttctcgcaatgctagagtttattctggcattgatc 2667821

                                                                           
Query: 414     tatctaaagatgaagtgacccagactggtaaaatgctgacgaaggacgagtatgacccag 473
               | ||||||||||| ||||| |||| || |||| |||   | || ||||| ||||| ||||
Sbjct: 2667820 tgtctaaagatgaggtgacacagattgctaaattgccagcaaatgacgactatgatccag 2667761

                            
Query: 474     gaaatgatcttgg 486
               || ||||||||||
Sbjct: 2667760 gagatgatcttgg 2667748



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                           
Query: 497     ggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaagcatcacaacaac 556
               |||| |||||| | |||| | ||||||||||| ||||| ||||| |  ||||||||||| 
Sbjct: 2667418 gggggaaatgactatgaagcaggtcttccagaatttgacccaattagtcatcacaacaat 2667359

                    
Query: 557     tattg 561
               |||||
Sbjct: 2667358 tattg 2667354
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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score =  361 bits (182), Expect = 2e-96
 Identities = 269/298 (90%)
 Strand = Plus / Minus

                                                                         
Query: 5     cctgcttttgctagggatcaacttagccttggagttagtggaggcagtgttggaatgggt 64
             ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 93962 cctgcttttgctagggaccaactaagcctgggagttagtggagggagtgttggtatgggt 93903

                                                                         
Query: 65    gctagtcatgaagccgaaattcacggagtcgagatttctggacataaaactgagagcgtt 124
             ||||||||||||||||||||||| ||||| ||  ||||||  ||||||||||| || |||
Sbjct: 93902 gctagtcatgaagccgaaattcatggagttgatgtttctgagcataaaactgatagtgtt 93843

                                                                         
Query: 125   gttggagatgtggaaccagttcccgagcttactgaaaccatgggtcatactggtgagtca 184
             ||||||||||||||||||| |||||||||||||||||  |||||  ||||||||||||||
Sbjct: 93842 gttggagatgtggaaccagctcccgagcttactgaaaatatgggcaatactggtgagtca 93783

                                                                         
Query: 185   gctcctggacctggaatgatggatgagtttgtccctgaggatgctggtcgagaagagcct 244
             || ||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||
Sbjct: 93782 gcccctggacctggaatgatggatgagtttgtccctgaagatgttggccgagaagaacct 93723

                                                                       
Query: 245   cagggtgatagccacgatgtggcatctcagttagtgggtcgagtggacagtggttcaa 302
             |||||||||||||| ||||||||||||| |||||||||| |||  |||||||| ||||
Sbjct: 93722 cagggtgatagccaagatgtggcatctcggttagtgggtagagctgacagtggctcaa 93665



 Score =  184 bits (93), Expect = 2e-43
 Identities = 168/193 (87%)
 Strand = Plus / Minus

                                                                         
Query: 294   gtggttcaactaaagctgattcggtcgagagtggagagaagatgagccatgccagaggcc 353
             |||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct: 93658 gtggttcaactaaagctgattctgttgagagtggagagaagatgagccatggcataggtc 93599

                                                                         
Query: 354   aggagagtaacctgcaacattccctttcttgcaatgcaagagtttattctggcattgatt 413
             | ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||| 
Sbjct: 93598 atgagagtaacctacagcattccctttctcgcaatgctagagtttattctggcattgatc 93539

                                                                         
Query: 414   tatctaaagatgaagtgacccagactggtaaaatgctgacgaaggacgagtatgacccag 473
             | ||||||||||| ||||| |||| || |||| |||   | || ||||| ||||| ||||
Sbjct: 93538 tgtctaaagatgaggtgacacagattgctaaattgccagcaaatgacgactatgatccag 93479

                          
Query: 474   gaaatgatcttgg 486
             || ||||||||||
Sbjct: 93478 gagatgatcttgg 93466



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 497   ggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaagcatcacaacaac 556
             |||| |||||| | |||| | ||||||||||| ||||| ||||| |  ||||||||||| 
Sbjct: 93136 gggggaaatgactatgaagcaggtcttccagaatttgacccaattagtcatcacaacaat 93077

                  
Query: 557   tattg 561
             |||||
Sbjct: 93076 tattg 93072
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>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full
            insert sequence
          Length = 3250

 Score =  345 bits (174), Expect = 1e-91
 Identities = 267/298 (89%)
 Strand = Plus / Plus

                                                                        
Query: 5    cctgcttttgctagggatcaacttagccttggagttagtggaggcagtgttggaatgggt 64
            ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 2103 cctgcttttgctagggaccaactaagcctgggagttagtggagggagtgttggtatgggt 2162

                                                                        
Query: 65   gctagtcatgaagccgaaattcacggagtcgagatttctggacataaaactgagagcgtt 124
            ||||||||||||||||||||||| ||||| ||  ||||||  ||||||||||| || |||
Sbjct: 2163 gctagtcatgaagccgaaattcatggagttgatgtttctgagcataaaactgatagtgtt 2222

                                                                        
Query: 125  gttggagatgtggaaccagttcccgagcttactgaaaccatgggtcatactggtgagtca 184
            ||||||||||||||||||| |||||||||||||||||  |||||  ||||||||||||||
Sbjct: 2223 gttggagatgtggaaccagctcccgagcttactgaaaatatgggcaatactggtgagtca 2282

                                                                        
Query: 185  gctcctggacctggaatgatggatgagtttgtccctgaggatgctggtcgagaagagcct 244
            || ||||||||||||||||||||||||||||||||||| || | ||| |||||||| |||
Sbjct: 2283 gcccctggacctggaatgatggatgagtttgtccctgaagaggttggccgagaagaacct 2342

                                                                      
Query: 245  cagggtgatagccacgatgtggcatctcagttagtgggtcgagtggacagtggttcaa 302
            ||| |||||||||| ||||||||||||| |||||||||| |||  |||||||| ||||
Sbjct: 2343 cagagtgatagccaagatgtggcatctcggttagtgggtagagctgacagtggctcaa 2400



 Score =  202 bits (102), Expect = 9e-49
 Identities = 227/268 (84%), Gaps = 3/268 (1%)
 Strand = Plus / Plus

                                                                        
Query: 294  gtggttcaactaaagctgattcggtcgagagtggagagaagatgagccatgccagaggcc 353
            |||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct: 2407 gtggttcaactaaagctgattctgttgagagtggagagaagatgagccatggcataggtc 2466

                                                                        
Query: 354  aggagagtaacctgcaacattccctttcttgcaatgcaagagtttattctggcattgatt 413
            | ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||| 
Sbjct: 2467 atgagagtaacctacagcattccctttctcgcaatgctagagtttattctggcattgatc 2526

                                                                        
Query: 414  tatctaaagatgaagtgacccagactggtaaaatgctgacgaaggacgagtatgacccag 473
            | ||||||||||| ||||| |||| || |||| |||   | || ||||| ||||| ||||
Sbjct: 2527 tgtctaaagatgaggtgacacagattgctaaattgccagcaaatgacgactatgatccag 2586

                                                                        
Query: 474  gaaatgatcttggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttg 533
            || ||||||||| ||||   || |||| |||||| | |||| | ||||||||||| ||||
Sbjct: 2587 gagatgatcttgcagca---aacgggggaaatgactatgaagcaggtcttccagaatttg 2643

                                        
Query: 534  atccaatcaagcatcacaacaactattg 561
            | ||||| |  ||||||||||| |||||
Sbjct: 2644 acccaattagtcatcacaacaattattg 2671
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        agcccctgcttttgctagggatcaacttagccttggagttagtggaggcagtgttggaat 60
                ||||||||||||||| ||||||||||||||  | ||| |||| || || |||||||| ||
Sbjct: 32289788 agcccctgcttttgcaagggatcaacttagtgtaggaattagcggtggtagtgttggcat 32289729

                                           
Query: 61       gggtgctagtcatgaagccgaaattca 87
                ||||||||| |||||||| ||||||||
Sbjct: 32289728 gggtgctagccatgaagctgaaattca 32289702



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                            
Query: 164      atgggtcatactggtgagtcagctcctggacctggaatgatggatgagtttgtccctgag 223
                ||||||||||||||||| |||| ||||||||||||| | |||||||||||||| ||||| 
Sbjct: 32289625 atgggtcatactggtgaatcagttcctggacctggactaatggatgagtttgtacctgac 32289566

                                                                    
Query: 224      gatgctggtcgagaagagcctcagggtgatagccacgatgtggcatctcagt 275
                || | || |||  |||| ||||| || |||||||| ||| |||  |||||||
Sbjct: 32289565 gaagttgatcggcaagaacctcatggagatagccaagatatggtgtctcagt 32289514



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 485      ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 544
                |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 32288750 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 32288691

                          
Query: 545      catcacaaca 554
                ||||||||||
Sbjct: 32288690 catcacaaca 32288681



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 295      tggttcaactaaagctgattcggtcgagagtggagagaagat 336
                |||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 32289479 tggttccactaaagctgattctgttgagagtggagaaaagat 32289438
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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                         
Query: 1     agcccctgcttttgctagggatcaacttagccttggagttagtggaggcagtgttggaat 60
             ||||||||||||||| ||||||||||||||  | ||| |||| || || |||||||| ||
Sbjct: 23555 agcccctgcttttgcaagggatcaacttagtgtaggaattagcggtggtagtgttggcat 23496

                                        
Query: 61    gggtgctagtcatgaagccgaaattca 87
             ||||||||| |||||||| ||||||||
Sbjct: 23495 gggtgctagccatgaagctgaaattca 23469



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                         
Query: 164   atgggtcatactggtgagtcagctcctggacctggaatgatggatgagtttgtccctgag 223
             ||||||||||||||||| |||| ||||||||||||| | |||||||||||||| ||||| 
Sbjct: 23392 atgggtcatactggtgaatcagttcctggacctggactaatggatgagtttgtacctgac 23333

                                                                 
Query: 224   gatgctggtcgagaagagcctcagggtgatagccacgatgtggcatctcagt 275
             || | || |||  |||| ||||| || |||||||| ||| |||  |||||||
Sbjct: 23332 gaagttgatcggcaagaacctcatggagatagccaagatatggtgtctcagt 23281



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 485   ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 544
             |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 22517 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 22458

                       
Query: 545   catcacaaca 554
             ||||||||||
Sbjct: 22457 catcacaaca 22448



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 295   tggttcaactaaagctgattcggtcgagagtggagagaagat 336
             |||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 23246 tggttccactaaagctgattctgttgagagtggagaaaagat 23205
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        agcccctgcttttgctagggatcaacttagccttggagttagtggaggcagtgttggaat 60
                ||||||||||||||| ||||||||||||||  | ||| |||| || || |||||||| ||
Sbjct: 32380298 agcccctgcttttgcaagggatcaacttagtgtaggaattagcggtggtagtgttggcat 32380239

                                           
Query: 61       gggtgctagtcatgaagccgaaattca 87
                ||||||||| |||||||| ||||||||
Sbjct: 32380238 gggtgctagccatgaagctgaaattca 32380212



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                            
Query: 164      atgggtcatactggtgagtcagctcctggacctggaatgatggatgagtttgtccctgag 223
                ||||||||||||||||| |||| ||||||||||||| | |||||||||||||| ||||| 
Sbjct: 32380135 atgggtcatactggtgaatcagttcctggacctggactaatggatgagtttgtacctgac 32380076

                                                                    
Query: 224      gatgctggtcgagaagagcctcagggtgatagccacgatgtggcatctcagt 275
                || | || |||  |||| ||||| || |||||||| ||| |||  |||||||
Sbjct: 32380075 gaagttgatcggcaagaacctcatggagatagccaagatatggtgtctcagt 32380024



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 485      ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 544
                |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 32379260 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 32379201

                          
Query: 545      catcacaaca 554
                ||||||||||
Sbjct: 32379200 catcacaaca 32379191



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 295      tggttcaactaaagctgattcggtcgagagtggagagaagat 336
                |||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 32379989 tggttccactaaagctgattctgttgagagtggagaaaagat 32379948
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>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full
            insert sequence
          Length = 3325

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1    agcccctgcttttgctagggatcaacttagccttggagttagtggaggcagtgttggaat 60
            ||||||||||||||| ||||||||||||||  | ||| |||| || || |||||||| ||
Sbjct: 2071 agcccctgcttttgcaagggatcaacttagtgtaggaattagcggtggtagtgttggcat 2130

                                       
Query: 61   gggtgctagtcatgaagccgaaattca 87
            ||||||||| |||||||| ||||||||
Sbjct: 2131 gggtgctagccatgaagctgaaattca 2157



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 94/112 (83%)
 Strand = Plus / Plus

                                                                        
Query: 164  atgggtcatactggtgagtcagctcctggacctggaatgatggatgagtttgtccctgag 223
            ||||||||||||||||| |||| ||||||||||||| | |||||||||||||| ||||| 
Sbjct: 2234 atgggtcatactggtgaatcagttcctggacctggactaatggatgagtttgtacctgac 2293

                                                                
Query: 224  gatgctggtcgagaagagcctcagggtgatagccacgatgtggcatctcagt 275
            || | || |||  |||| ||||| || |||||||| ||| |||  |||||||
Sbjct: 2294 gaagttgatcggcaagaacctcatggagatagccaagatatggtgtctcagt 2345



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                        
Query: 485  ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 544
            |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 2591 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 2650

                      
Query: 545  catcacaaca 554
            ||||||||||
Sbjct: 2651 catcacaaca 2660



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                      
Query: 295  tggttcaactaaagctgattcggtcgagagtggagagaagat 336
            |||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 2380 tggttccactaaagctgattctgttgagagtggagaaaagat 2421
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>dbj|AK063754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A04, full
           insert sequence
          Length = 577

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                       
Query: 485 ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 544
           |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 166 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 225

                     
Query: 545 catcacaaca 554
           ||||||||||
Sbjct: 226 catcacaaca 235
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>ref|NM_204276.1| Gallus gallus breast cancer 2, early onset (BRCA2), mRNA
          Length = 10310

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 483  ttggagcaacgaatggggaaaatgattctgaa 514
            ||||||||||||||| |||||||| |||||||
Sbjct: 3320 ttggagcaacgaatgtggaaaatgcttctgaa 3351
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>gb|AY083934.1| Gallus gallus breast cancer susceptibility protein (BRCA2) mRNA,
            complete cds
          Length = 10197

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 483  ttggagcaacgaatggggaaaatgattctgaa 514
            ||||||||||||||| |||||||| |||||||
Sbjct: 3323 ttggagcaacgaatgtggaaaatgcttctgaa 3354
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>dbj|AB066374.1| Gallus gallus brca2 mRNA for tumor suppressor BRCA2, complete cds
          Length = 10310

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 483  ttggagcaacgaatggggaaaatgattctgaa 514
            ||||||||||||||| |||||||| |||||||
Sbjct: 3320 ttggagcaacgaatgtggaaaatgcttctgaa 3351
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>ref|NM_101582.2| Arabidopsis thaliana unknown protein AT1G17210 mRNA, complete cds
          Length = 3348

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 415  atctaaagatgaagtgacccagact 439
            ||||||||| |||||||||||||||
Sbjct: 2565 atctaaagaagaagtgacccagact 2589



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 41   agtggaggcagtgttggaatgggtgctagtcatgaagccgaaattcacggag 92
            ||||| || ||||| ||||||||||| ||||| || || ||||| |||||||
Sbjct: 2170 agtgggggtagtgtcggaatgggtgcaagtcacgaggcagaaatacacggag 2221
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>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
             sequence
          Length = 114935

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 415   atctaaagatgaagtgacccagact 439
             ||||||||| |||||||||||||||
Sbjct: 42342 atctaaagaagaagtgacccagact 42366



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                 
Query: 41    agtggaggcagtgttggaatgggtgctagtcatgaagccgaaattcacggag 92
             ||||| || ||||| ||||||||||| ||||| || || ||||| |||||||
Sbjct: 41947 agtgggggtagtgtcggaatgggtgcaagtcacgaggcagaaatacacggag 41998
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>emb|AL162851.10| Human DNA sequence from clone RP11-186M12 on chromosome 22, complete
             sequence
          Length = 172545

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   agagaagatgagccatgccag 348
             |||||||||||||||||||||
Sbjct: 42112 agagaagatgagccatgccag 42092
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 458     gacgagtatgacccaggaaatgatc 482
               ||||||||||||| |||||||||||
Sbjct: 2664768 gacgagtatgaccgaggaaatgatc 2664792
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>emb|BX072566.10| Human DNA sequence from clone RP11-25L22 on chromosome 22, complete
             sequence
          Length = 164239

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 328   agagaagatgagccatgccag 348
             |||||||||||||||||||||
Sbjct: 51688 agagaagatgagccatgccag 51708
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>dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, map 22, complete
             sequences
          Length = 168180

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   agagaagatgagccatgccag 348
             |||||||||||||||||||||
Sbjct: 74347 agagaagatgagccatgccag 74327
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>emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   agagaagatgagccatgccag 348
             |||||||||||||||||||||
Sbjct: 56441 agagaagatgagccatgccag 56421
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>emb|AL050303.4|HS214G14 Homo sapiens chromosome 21 PAC RPCIP704G14214Q2, complete sequence
          Length = 166239

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   agagaagatgagccatgccag 348
             |||||||||||||||||||||
Sbjct: 51855 agagaagatgagccatgccag 51835
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>emb|BX901974.11| Zebrafish DNA sequence from clone DKEY-30F3 in linkage group 3, complete
              sequence
          Length = 192650

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 124    tgttggagatgtggaaccagttccc 148
              ||||||||||||||||| |||||||
Sbjct: 135745 tgttggagatgtggaacgagttccc 135769
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>dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-72P4, complete
             sequence
          Length = 184770

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 328   agagaagatgagccatgccag 348
             |||||||||||||||||||||
Sbjct: 50377 agagaagatgagccatgccag 50397
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>gb|AC114825.4| Mus musculus BAC clone RP24-104P22 from chromosome 3, complete sequence
          Length = 202237

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 185   gctcctggacctggaatgatggatgagt 212
             ||||||||||||| |||| |||||||||
Sbjct: 39345 gctcctggacctgtaatggtggatgagt 39372
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>emb|CR956377.9| Pig DNA sequence from clone PigE-220E19 on chromosome 7, complete
             sequence
          Length = 222390

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   actggtgagtcagctcctgg 192
             ||||||||||||||||||||
Sbjct: 70022 actggtgagtcagctcctgg 70041
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>emb|CR956388.7| Pig DNA sequence from clone PigI-736G5 on chromosome 7, complete
             sequence
          Length = 151383

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   actggtgagtcagctcctgg 192
             ||||||||||||||||||||
Sbjct: 99689 actggtgagtcagctcctgg 99708
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>gb|AC163009.2| Mus musculus chromosome 1, clone RP23-268A12, complete sequence
          Length = 147135

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    actggtgagtcagctcctgg 192
              ||||||||||||||||||||
Sbjct: 122634 actggtgagtcagctcctgg 122615
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>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence
          Length = 205069

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    tttatctaaagatgaagtga 431
              ||||||||||||||||||||
Sbjct: 181284 tttatctaaagatgaagtga 181265
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     cttagccttggagttagtgg 45
              ||||||||||||||||||||
Sbjct: 621859 cttagccttggagttagtgg 621878
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>gb|AC004615.1|AC004615 Homo sapiens BAC clone GS1-405L21 from 5p15.2, complete sequence
          Length = 235141

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 363   acctgcaacattccctttcttgca 386
             ||||||||||||||| ||||||||
Sbjct: 48910 acctgcaacattcccattcttgca 48933
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>gb|AC147186.3| Mus musculus BAC clone RP24-112I5 from 3, complete sequence
          Length = 157929

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 185   gctcctggacctggaatgatggatgagt 212
             ||||||||||||| |||| |||||||||
Sbjct: 24462 gctcctggacctgtaatggtggatgagt 24435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,744,787
Number of Sequences: 3902068
Number of extensions: 4744787
Number of successful extensions: 95733
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95571
Number of HSP's gapped (non-prelim): 160
length of query: 562
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 539
effective length of database: 17,143,297,704
effective search space: 9240237462456
effective search space used: 9240237462456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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