>SYFB_ANADE (Q2IJB3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 800

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 68  RFGVNDSVRGDLAPAHPVQAAIHKXVQVLGRQXRSSGPRPSTDPPSTSARISTP 229
           R  V  +V GD+A  H  +AA+   ++ LG +   + P P    P TSA +  P
Sbjct: 606 RSPVGWAVGGDVADFHDAKAAVQGLLEALGVEAAWAAPGPGWLHPRTSAALRAP 659

>EBNA3_EBV (P12977) Epstein-Barr nuclear antigen 3 (EBV nuclear antigen 3)|
           (EBNA-3) (EBNA-3A)
          Length = 812

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
 Frame = -1

Query: 427 GRWVP--WTGQGEPPSRGACPVRAGCQSLGAS*GNLQIQNHPRNLSLPHIPA*MMAMHL- 257
           G WVP  W  QG PPS+G   V+    +LG +   L   NHP    +P  PA +   HL 
Sbjct: 648 GPWVPEQWMFQGAPPSQGTDVVQHQLDALGYT---LHGLNHP---GVPVSPA-VNQYHLS 700

Query: 256 -GAFG-------TWRGSGRRDPC 212
             AFG       +  GS   +PC
Sbjct: 701 QAAFGLPIDEDESGEGSDTSEPC 723

>RNAS1_MYOGL (Q9WUS1) Ribonuclease pancreatic precursor (EC 3.1.27.5) (RNase 1)|
           (RNase A)
          Length = 156

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 362 CAYRTCTTGWRFALACPRDPSAPVSIDST 448
           CAYRT     R  +AC  DPS PV  D +
Sbjct: 123 CAYRTTQKVKRIVVACEGDPSVPVHYDGS 151

>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein|
            2 (HIV-EP2) (MHC-binding protein 2) (MBP-2)
          Length = 2446

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 310  DDFG-FEDYLNLPQDSDSLRVPDMHHGMEVRLGLSKGPICP 429
            D+FG   ++L +P  S SL VP  HH  E+R   S+   CP
Sbjct: 998  DEFGKHSEFLTVPAGSYSLSVPGHHHQKEMRRCSSEQMPCP 1038

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 176 GPRPSTDPPSTSARISTPRSSPGSKGP 256
           GP P T P + S +  TP  SP ++GP
Sbjct: 904 GPHPQTGPAAPSKQAPTPSQSPAAQGP 930

>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 158 RQXRSSGPRPSTDPPSTSARIST--PRSSPGSKGP 256
           R  R  G RP  D P  + R S   PR +PG++GP
Sbjct: 276 RGDRPQGDRPQGDRPQQTVRYSALAPRPAPGARGP 310

>SMAD6_HUMAN (O43541) Mothers against decapentaplegic homolog 6 (SMAD 6)|
           (Mothers against DPP homolog 6) (Smad6) (hSMAD6)
          Length = 496

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 3/115 (2%)
 Frame = +2

Query: 101 LAPAHPVQAAIHKXVQVLGRQXRSSG-PRPSTDPPSTSARISTPRSSPGSKG--PQVHCH 271
           +AP  P  A   +  Q  GR+ R+ G PRP ++P + +       + PG  G  P+  C 
Sbjct: 63  VAPRRPRDAVGQRGAQGAGRRRRAGGPPRPMSEPGAGAGSSLLDVAEPGGPGWLPESDCE 122

Query: 272 HLCWDMRQ*QVPWMILDLKITLTCPKTLTACAYRTCTTGWRFALACPRDPSAPVS 436
                               T+TC           C    R A   PRD S P++
Sbjct: 123 --------------------TVTC-----------CLFSERDAAGAPRDASDPLA 146

>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus|
           (Acinus)
          Length = 1338

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +2

Query: 167 RSSGPRPSTDP---PSTSARISTPRSSPGSK---GPQVHCH 271
           RSS P  S+ P   PS  +  S P+SSPGSK   G Q   H
Sbjct: 580 RSSSPSSSSSPSRSPSPDSVASRPQSSPGSKQRDGAQARVH 620

>RNAS2_AOTTR (O18937) Nonsecretory ribonuclease precursor (EC 3.1.27.5)|
           (Ribonuclease US) (Eosinophil-derived neurotoxin) (RNase
           UpI-2) (Ribonuclease 2) (RNase 2)
          Length = 158

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +2

Query: 263 HCHHLCWDMRQ*QVPWMILDLKITLTCPKTLTACAYRTCTTGWRFALAC--------PRD 418
           +CHH      + QVP    +L    T P T+T C Y +      + +AC        P+ 
Sbjct: 97  NCHH-----SRVQVPLTYCNL----TGPPTITNCVYSSTQANMFYVVACDNRDQRDPPQY 147

Query: 419 PSAPVSIDST 448
           P  PV +D+T
Sbjct: 148 PVVPVHLDTT 157

>MTFA_PSEPK (Q88L23) Putative RNA 2'-O-ribose methyltransferase mtfA (EC|
           2.1.1.-)
          Length = 354

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = -2

Query: 510 QPSDWYRCWTGSTTYHKTN---TWVESIETGADGSLGQAKANLHPVVHVRYAQAVRVLGQ 340
           QP DW  C         T+   TW+       +G   +A  NL   +  RYA+  R+L +
Sbjct: 263 QPVDWMVCDIVEKPARTTSLIETWL------GEGLCREAVVNLKLPMKQRYAEVRRLLDR 316

Query: 339 VKVIFKSKIIQGTCHC 292
           ++  FK++ I+ +  C
Sbjct: 317 MEATFKARKIRVSIAC 332

>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 155  GRQXRSSGPRPSTDPPSTSARISTPRSSPGSKGPQVH 265
            GR  RSS   P   PP+++ +  TPR + G+   + H
Sbjct: 1570 GRAHRSSAKTPELQPPTSTGQPFTPRPTSGATQGRTH 1606

>ARSA_HALSA (O52027) Putative arsenical pump-driving ATPase (EC 3.6.3.16)|
           (Arsenite-translocating ATPase) (Arsenical resistance
           ATPase) (Arsenite-transporting ATPase)
          Length = 644

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 252 PLEPGEDLGVEILADVEGGSVDG 184
           PL+PGE  G+E+L+DV G   DG
Sbjct: 280 PLQPGEIAGLELLSDVGGVLYDG 302

>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687|
          Length = 1237

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 155  GRQXRSSGPRPSTDPPSTSARISTPRSSPGSKG 253
            GR+ R S    S +P ST+    +PR  PGS G
Sbjct: 1076 GRKRRQSSDSCSEEPDSTTPPAKSPRGGPGSGG 1108

>DSX_DROME (P23023) Protein doublesex|
          Length = 549

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 19/66 (28%), Positives = 24/66 (36%)
 Frame = +2

Query: 80  NDSVRGDLAPAHPVQAAIHKXVQVLGRQXRSSGPRPSTDPPSTSARISTPRSSPGSKGPQ 259
           N +V    +P      A       L R+ RS    P+T PP        P +   S G  
Sbjct: 484 NGTVHSAASPTMVTTMATTSSTPTLSRRQRSRSATPTTPPP-------PPPAHSSSNGAY 536

Query: 260 VHCHHL 277
            H HHL
Sbjct: 537 HHGHHL 542

>POLG_HRV3 (Q82081) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D)] (Fragment)
          Length = 854

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
 Frame = +2

Query: 191 TDPPSTSARISTPRSSPGSKGPQ-----VHCHHLCWDMRQ*Q-----VPWMILDLKITLT 340
           T P  +SA+I    + PG++GP+     +   H+ WD+         +PW    ++   T
Sbjct: 448 TGPALSSAKIILAYTPPGTRGPEDRKKAMLGTHVVWDIGLQSTIVMTIPW-TSGVQFRYT 506

Query: 341 CPKTLTACAYRTC 379
            P T T+  Y +C
Sbjct: 507 DPDTYTSAGYLSC 519

>UBL7_HUMAN (Q96S82) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)|
           (Bone marrow stromal cell ubiquitin-like protein)
           (BMSC-UbP)
          Length = 380

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = +2

Query: 101 LAPAHPVQAAIHKXVQVLGRQXRSSGPRPSTDPPSTSARISTPRSSPG 244
           L PAHP  A ++  V VL      S P P TD  S S   S+ R  PG
Sbjct: 178 LVPAHP--ALVNAIVLVL-HSVAGSAPMPGTDSSSRSMPSSSYRDMPG 222

>RNAS2_SAGOE (P47786) Nonsecretory ribonuclease precursor (EC 3.1.27.5)|
           (Ribonuclease US) (Eosinophil-derived neurotoxin) (RNase
           UpI-2) (Ribonuclease 2) (RNase 2)
          Length = 158

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
 Frame = +2

Query: 335 LTCPKTLTACAYRTCTTGWRFALAC----PRDPS----APVSIDST 448
           LT P+T++ C Y +      + +AC    PRDP      PV +D+T
Sbjct: 112 LTGPQTISNCVYSSTQANMFYVVACDNRDPRDPPQYPVVPVHLDTT 157

>ZN499_HUMAN (Q96K62) Zinc finger protein 499|
          Length = 511

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 104 APAHPVQAAIHKXVQVLGRQXRSSGPRPSTDPPSTSARISTPRSSPGSKGPQVHCHH 274
           APA P   A +  +Q         G  P+     T+A   TP  +PG++ P   C H
Sbjct: 353 APAPP--PAFYPTLQPEAAPSTQLGEVPAPSAAPTTAPSGTPARTPGAEPPTYECSH 407

>KPB2_HUMAN (P46019) Phosphorylase b kinase alpha regulatory chain, liver isoform|
            (Phosphorylase kinase alpha L subunit)
          Length = 1235

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 203  STSARISTPRSSPGSKGPQVHCHHLCWDMRQ*Q 301
            S SAR STP S  G+       HH+ W  RQ Q
Sbjct: 1034 SKSARSSTPSSPTGTSSSDSGGHHIGWGERQGQ 1066


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,126,568
Number of Sequences: 219361
Number of extensions: 1873860
Number of successful extensions: 6430
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6423
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)