ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9a14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M09, full insert sequence Length = 778 Score = 353 bits (178), Expect = 4e-94 Identities = 338/389 (86%), Gaps = 2/389 (0%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 108 ccacgacgtcctccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 167 Query: 115 ccccgtccaggccgccatccacaaggnagtccaagttctgggacgacaagnaagaagttc 174 ||| |||||||| | ||||||||| | |||||||||||| |||||| |||| |||| Sbjct: 168 cccgctccaggccagcgtccacaaggatg-ccaagttctgggcggacaag-aagaggttc 225 Query: 175 gggaccgaggccatctacggatccgccttcaacatccgcaaggatctcgacgcccagatc 234 || | || |||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 226 ggcgcggaagccatctacggatccgccttcaacatccgcaaggatcttgatgcccaaatc 285 Query: 235 ctctccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggca 294 ||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 286 ctctccaagttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggca 345 Query: 295 atgacaggttccttggatgattttggatttgaagattaccttaacttgccccaagactct 354 |||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 346 ctgactggttccttagatgattttgggtttgaagattatcttaacttgccccaagattct 405 Query: 355 gacagcctgcgcgtaccggacatgcaccacgggatggaggttcgccttggcctgtccaag 414 || ||| | || | || |||||||||||||| |||||||||||||| || |||| ||| Sbjct: 406 gaaagcttccgtgctcccgacatgcaccacggaatggaggttcgcctcggtttgtcaaag 465 Query: 415 ggacccatctgccccagtttcaattgatt 443 ||||| | ||||| |||||||||||||| Sbjct: 466 ggacctgtttgccctagtttcaattgatt 494
>ref|XM_463066.1| Oryza sativa (japonica cultivar-group), mRNA Length = 846 Score = 307 bits (155), Expect = 2e-80 Identities = 295/339 (87%), Gaps = 2/339 (0%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 |||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| Sbjct: 42 ccacgacgtgctcctcttcggcgtcaacaacagcgtcaagggcgacctcgcgccgcagca 101 Query: 115 ccccgtccaggccgccatccacaaggnagtccaagttctgggacgacaagnaagaagttc 174 ||| |||||||| || ||||||||| || |||||||||||| || ||| |||| |||| Sbjct: 102 cccgatccaggccaccgtccacaagg-aggccaagttctgggcggataag-aagaggttc 159 Query: 175 gggaccgaggccatctacggatccgccttcaacatccgcaaggatctcgacgcccagatc 234 ||| | || ||||||||||||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 160 ggggcggaagccatctacggatccgctttcaacatccgcaaggatctcgatgcccaaatc 219 Query: 235 ctctccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggca 294 ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 220 ctctccaagttccaaaggccccctggtgcattgccatcatctatgctaggatacgaggcg 279 Query: 295 atgacaggttccttggatgattttggatttgaagattaccttaacttgccccaagactct 354 |||| ||||||||||||||||| || ||||||||||| || |||||||||||||| ||| Sbjct: 280 ctgactggttccttggatgatttcgggtttgaagattatctcaacttgccccaagattct 339 Query: 355 gacagcctgcgcgtaccggacatgcaccacgggatggag 393 |||||| | | | || |||||||||||||| |||||| Sbjct: 340 gacagcttccatgctccagacatgcaccacggaatggag 378
>gb|AY105712.1| Zea mays PCO130616 mRNA sequence Length = 981 Score = 289 bits (146), Expect = 5e-75 Identities = 297/345 (86%), Gaps = 2/345 (0%) Strand = Plus / Plus Query: 97 cgacctcgcgccggcgcaccccgtccaggccgccatccacaaggnagtccaagttctggg 156 ||||||||||||| ||||||| ||||| || |||||| | | || |||||||||||| Sbjct: 168 cgacctcgcgccgccgcacccgctccagtccagcatcca-atcggaggccaagttctggg 226 Query: 157 acgacaagnaagaagttcgggaccgaggccatctacggatccgccttcaacatccgcaag 216 |||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 227 cggacaag-aagaagtttgggacagaggccatctacggatccgccttgaacatccgcaag 285 Query: 217 gatctcgacgcccagatcctctccaggttccaaaggcccccaggtgcattgccatcatct 276 |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct: 286 gatctcgatgcccaaatcctctcaaggttccaaaggccccctggtgctttgccatcatct 345 Query: 277 atgctgggatatgaggcaatgacaggttccttggatgattttggatttgaagattacctt 336 |||| |||||||||||| ||||||||||| | ||||||||||| ||||||||||| ||| Sbjct: 346 ctgcttggatatgaggcactgacaggttccctagatgattttggttttgaagattatctt 405 Query: 337 aacttgccccaagactctgacagcctgcgcgtaccggacatgcaccacgggatggaggtt 396 ||| |||| ||||| ||||| | | || ||| |||||||||||||| ||||||||| Sbjct: 406 aacatgcctcaagattctgaaggtttccgtcaacctgacatgcaccacggaatggaggtt 465 Query: 397 cgccttggcctgtccaagggacccatctgccccagtttcaattga 441 |||||||| ||||||||||||| |||||||| || |||| |||| Sbjct: 466 cgccttggtttgtccaagggacctatctgccctagcttcagttga 510
>dbj|AK072342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052N08, full insert sequence Length = 3232 Score = 281 bits (142), Expect = 1e-72 Identities = 252/286 (88%), Gaps = 2/286 (0%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 90 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 149 Query: 115 ccccgtccaggccgccatccacaaggnagtccaagttctgggacgacaagnaagaagttc 174 ||| |||||||| | ||||||||| || |||||||||||| |||||| |||| |||| Sbjct: 150 cccgctccaggccagcgtccacaagg-aggccaagttctgggcggacaag-aagaggttc 207 Query: 175 gggaccgaggccatctacggatccgccttcaacatccgcaaggatctcgacgcccagatc 234 || | || |||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 208 ggcgcggaagccatctacggatccgccttcaacatccgcaaggatcttgatgcccaaatc 267 Query: 235 ctctccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggca 294 ||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 268 ctctccaagttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggca 327 Query: 295 atgacaggttccttggatgattttggatttgaagattaccttaact 340 |||| |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 328 ctgactggttccttagatgattttgggtttgaagattatcttaact 373
>dbj|AK072332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L20, full insert sequence Length = 4792 Score = 281 bits (142), Expect = 1e-72 Identities = 252/286 (88%), Gaps = 2/286 (0%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 76 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 135 Query: 115 ccccgtccaggccgccatccacaaggnagtccaagttctgggacgacaagnaagaagttc 174 ||| |||||||| | ||||||||| || |||||||||||| |||||| |||| |||| Sbjct: 136 cccgctccaggccagcgtccacaagg-aggccaagttctgggcggacaag-aagaggttc 193 Query: 175 gggaccgaggccatctacggatccgccttcaacatccgcaaggatctcgacgcccagatc 234 || | || |||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 194 ggcgcggaagccatctacggatccgccttcaacatccgcaaggatcttgatgcccaaatc 253 Query: 235 ctctccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggca 294 ||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 254 ctctccaagttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggca 313 Query: 295 atgacaggttccttggatgattttggatttgaagattaccttaact 340 |||| |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 314 ctgactggttccttagatgattttgggtttgaagattatcttaact 359
>dbj|AK067815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118P06, full insert sequence Length = 3020 Score = 281 bits (142), Expect = 1e-72 Identities = 252/286 (88%), Gaps = 2/286 (0%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 75 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 134 Query: 115 ccccgtccaggccgccatccacaaggnagtccaagttctgggacgacaagnaagaagttc 174 ||| |||||||| | ||||||||| || |||||||||||| |||||| |||| |||| Sbjct: 135 cccgctccaggccagcgtccacaagg-aggccaagttctgggcggacaag-aagaggttc 192 Query: 175 gggaccgaggccatctacggatccgccttcaacatccgcaaggatctcgacgcccagatc 234 || | || |||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 193 ggcgcggaagccatctacggatccgccttcaacatccgcaaggatcttgatgcccaaatc 252 Query: 235 ctctccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggca 294 ||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 253 ctctccaagttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggca 312 Query: 295 atgacaggttccttggatgattttggatttgaagattaccttaact 340 |||| |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 313 ctgactggttccttagatgattttgggtttgaagattatcttaact 358
>gb|BT016426.1| Zea mays clone Contig259 mRNA sequence Length = 643 Score = 280 bits (141), Expect = 5e-72 Identities = 259/297 (87%), Gaps = 1/297 (0%) Strand = Plus / Plus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||||||||||||| || ||||| || ||||||||| || Sbjct: 193 ccaagttctgggcggacaag-aagaagttcgggacagatgccatatatggatccgccctc 251 Query: 205 aacatccgcaaggatctcgacgcccagatcctctccaggttccaaaggcccccaggtgca 264 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 252 aacatccgcaaggatctcgatgcccaaatcctctccaggttccaaaggccccctggtgct 311 Query: 265 ttgccatcatctatgctgggatatgaggcaatgacaggttccttggatgattttggattt 324 ||||| |||||| |||| ||||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 312 ttgccgtcatctctgcttggatacgaggcactgacaggttccctggatgattttggattt 371 Query: 325 gaagattaccttaacttgccccaagactctgacagcctgcgcgtaccggacatgcaccac 384 |||||||| |||||| |||| || || |||||||| | || ||| ||||||||||| Sbjct: 372 gaagattatcttaacatgcctcatgattctgacagtttccgtcaacctgacatgcaccat 431 Query: 385 gggatggaggttcgccttggcctgtccaagggacccatctgccccagtttcaattga 441 || ||||||||||||||||| ||||||||||||| ||||| || || ||||||||| Sbjct: 432 ggaatggaggttcgccttggtttgtccaagggacctatctgtcctagcttcaattga 488
>gb|AY104566.1| Zea mays PCO130617 mRNA sequence Length = 1029 Score = 280 bits (141), Expect = 5e-72 Identities = 259/297 (87%), Gaps = 1/297 (0%) Strand = Plus / Plus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||||||||||||| || ||||| || ||||||||| || Sbjct: 482 ccaagttctgggcggacaag-aagaagttcgggacagatgccatatatggatccgccctc 540 Query: 205 aacatccgcaaggatctcgacgcccagatcctctccaggttccaaaggcccccaggtgca 264 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 541 aacatccgcaaggatctcgatgcccaaatcctctccaggttccaaaggccccctggtgct 600 Query: 265 ttgccatcatctatgctgggatatgaggcaatgacaggttccttggatgattttggattt 324 ||||| |||||| |||| ||||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 601 ttgccgtcatctctgcttggatacgaggcactgacaggttccctggatgattttggattt 660 Query: 325 gaagattaccttaacttgccccaagactctgacagcctgcgcgtaccggacatgcaccac 384 |||||||| |||||| |||| || || |||||||| | || ||| ||||||||||| Sbjct: 661 gaagattatcttaacatgcctcatgattctgacagtttccgtcaacctgacatgcaccat 720 Query: 385 gggatggaggttcgccttggcctgtccaagggacccatctgccccagtttcaattga 441 || ||||||||||||||||| ||||||||||||| ||||| || || ||||||||| Sbjct: 721 ggaatggaggttcgccttggtttgtccaagggacctatctgtcctagcttcaattga 777
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 34172967 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 34172908 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 34172907 ctggttccttagatgattttgggtttgaagattatcttaact 34172866 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 34143250 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 34143191 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 34143190 ctggttccttagatgattttgggtttgaagattatcttaact 34143149 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 34118698 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 34118639 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 34118638 ctggttccttagatgattttgggtttgaagattatcttaact 34118597 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 34095511 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 34095452 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 34095451 ctggttccttagatgattttgggtttgaagattatcttaact 34095410 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 34173815 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 34173757 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 34173756 aacatccgcaaggatcttgatgcccaaatcctctcca 34173720 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 34144098 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 34144040 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 34144039 aacatccgcaaggatcttgatgcccaaatcctctcca 34144003 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 34119546 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 34119488 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 34119487 aacatccgcaaggatcttgatgcccaaatcctctcca 34119451 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 34096372 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 34096314 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 34096313 aacatccgcaaggatcttgatgcccaaatcctctcca 34096277 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 34096543 ccacgacgtcctccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 34096484 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 34096483 cccgctccaggccagcgtccacaagg 34096458 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 34173999 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 34173940 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 34173939 cccgctccaggccagcgtccacaagg 34173914 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 34144282 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 34144223 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 34144222 cccgctccaggccagcgtccacaagg 34144197 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 34119733 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 34119674 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 34119673 cccgctccaggccagcgtccacaagg 34119648 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 373 gacatgcaccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagt 432 |||||||||||||| |||||||||||||| || |||| |||||||| | ||||| ||| Sbjct: 34094685 gacatgcaccacggaatggaggttcgcctcggtttgtcaaagggacctgtttgccctagt 34094626 Query: 433 ttcaattgatt 443 ||||||||||| Sbjct: 34094625 ttcaattgatt 34094615 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 cctcgcgccggcgcaccccgt 120 ||||||||||||||||||||| Sbjct: 33056861 cctcgcgccggcgcaccccgt 33056841
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0032L17 Length = 165808 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 100481 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 100422 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 100421 ctggttccttagatgattttgggtttgaagattatcttaact 100380 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 70764 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 70705 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 70704 ctggttccttagatgattttgggtttgaagattatcttaact 70663 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 46212 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 46153 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 46152 ctggttccttagatgattttgggtttgaagattatcttaact 46111 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 23025 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 22966 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 22965 ctggttccttagatgattttgggtttgaagattatcttaact 22924 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 101329 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 101271 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 101270 aacatccgcaaggatcttgatgcccaaatcctctcca 101234 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 71612 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 71554 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 71553 aacatccgcaaggatcttgatgcccaaatcctctcca 71517 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 47060 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 47002 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 47001 aacatccgcaaggatcttgatgcccaaatcctctcca 46965 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 23886 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 23828 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 23827 aacatccgcaaggatcttgatgcccaaatcctctcca 23791 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 24057 ccacgacgtcctccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 23998 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 23997 cccgctccaggccagcgtccacaagg 23972 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 101513 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 101454 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 101453 cccgctccaggccagcgtccacaagg 101428 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 71796 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 71737 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 71736 cccgctccaggccagcgtccacaagg 71711 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 47247 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 47188 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 47187 cccgctccaggccagcgtccacaagg 47162 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 373 gacatgcaccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagt 432 |||||||||||||| |||||||||||||| || |||| |||||||| | ||||| ||| Sbjct: 22199 gacatgcaccacggaatggaggttcgcctcggtttgtcaaagggacctgtttgccctagt 22140 Query: 433 ttcaattgatt 443 ||||||||||| Sbjct: 22139 ttcaattgatt 22129
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 239 ccaggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatga 298 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct: 8240 ccaggttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactga 8181 Query: 299 caggttccttggatgattttggatttgaagattaccttaact 340 | |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 8180 ctggttccttagatgattttgggtttgaagattatcttaact 8139 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||| Sbjct: 9088 ccaagttctgggcggacaag-aagaggttcggcgcggaagccatctacggatccgccttc 9030 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 ||||||||||||||||| || ||||| |||||||||| Sbjct: 9029 aacatccgcaaggatcttgatgcccaaatcctctcca 8993 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| Sbjct: 9272 ccacgacgtcgtccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgca 9213 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| | ||||||||| Sbjct: 9212 cccgctccaggccagcgtccacaagg 9187
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Plus Query: 240 caggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatgac 299 |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 21300225 caggttccaaaggccccctggtgcattgccatcatctatgctaggatacgaggcgctgac 21300284 Query: 300 aggttccttggatgattttggatttgaagatta 332 ||||||||||||||||| || ||||||||||| Sbjct: 21300285 tggttccttggatgatttcgggtttgaagatta 21300317 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| || ||| |||| ||||||| | || ||||||||||||||||| ||| Sbjct: 21298354 ccaagttctgggcggataag-aagaggttcggggcggaagccatctacggatccgctttc 21298412 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 |||||||||||||||||||| ||||| |||||||||| Sbjct: 21298413 aacatccgcaaggatctcgatgcccaaatcctctcca 21298449 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 373 gacatgcaccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagt 432 |||||||||||||| ||||||||||||||||| |||| |||||||| || ||||| ||| Sbjct: 21301019 gacatgcaccacggaatggaggttcgccttggtttgtcaaagggaccgatttgccctagt 21301078 Query: 433 ttcaattgatt 443 ||||||||||| Sbjct: 21301079 ttcaattgatt 21301089 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 |||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| Sbjct: 21298174 ccacgacgtgctcctcttcggcgtcaacaacagcgtcaagggcgacctcgcgccgcagca 21298233 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| || ||||||||| Sbjct: 21298234 cccgatccaggccaccgtccacaagg 21298259
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Plus Query: 240 caggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatgac 299 |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 156140 caggttccaaaggccccctggtgcattgccatcatctatgctaggatacgaggcgctgac 156199 Query: 300 aggttccttggatgattttggatttgaagatta 332 ||||||||||||||||| || ||||||||||| Sbjct: 156200 tggttccttggatgatttcgggtttgaagatta 156232 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| || ||| |||| ||||||| | || ||||||||||||||||| ||| Sbjct: 154269 ccaagttctgggcggataag-aagaggttcggggcggaagccatctacggatccgctttc 154327 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 |||||||||||||||||||| ||||| |||||||||| Sbjct: 154328 aacatccgcaaggatctcgatgcccaaatcctctcca 154364 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 373 gacatgcaccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagt 432 |||||||||||||| ||||||||||||||||| |||| |||||||| || ||||| ||| Sbjct: 156934 gacatgcaccacggaatggaggttcgccttggtttgtcaaagggaccgatttgccctagt 156993 Query: 433 ttcaattgatt 443 ||||||||||| Sbjct: 156994 ttcaattgatt 157004 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 |||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| Sbjct: 154089 ccacgacgtgctcctcttcggcgtcaacaacagcgtcaagggcgacctcgcgccgcagca 154148 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| || ||||||||| Sbjct: 154149 cccgatccaggccaccgtccacaagg 154174
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Plus Query: 240 caggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatgac 299 |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 8584325 caggttccaaaggccccctggtgcattgccatcatctatgctaggatacgaggcgctgac 8584384 Query: 300 aggttccttggatgattttggatttgaagatta 332 ||||||||||||||||| || ||||||||||| Sbjct: 8584385 tggttccttggatgatttcgggtttgaagatta 8584417 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| || ||| |||| ||||||| | || ||||||||||||||||| ||| Sbjct: 8582456 ccaagttctgggcggataag-aagaggttcggggcggaagccatctacggatccgctttc 8582514 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 |||||||||||||||||||| ||||| |||||||||| Sbjct: 8582515 aacatccgcaaggatctcgatgcccaaatcctctcca 8582551 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 |||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| Sbjct: 8582276 ccacgacgtgctccgcttcggcttcaacaacagcgtcaagggcgacctcgcgccgcagca 8582335 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| || ||||||||| Sbjct: 8582336 cccgatccaggccaccgtccacaagg 8582361 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 373 gacatgcaccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagt 432 |||||||||||||| |||||||||| |||||| |||| |||||||| || ||||| ||| Sbjct: 8585121 gacatgcaccacggaatggaggttctccttggtttgtcaaagggaccgatttgccctagt 8585180 Query: 433 ttcaattgatt 443 ||||||||||| Sbjct: 8585181 ttcaattgatt 8585191 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 cctcgcgccggcgcaccccgt 120 ||||||||||||||||||||| Sbjct: 15959863 cctcgcgccggcgcaccccgt 15959883 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 cgtccgcggcgacctcgcgccggc 111 |||| ||||||||||||||||||| Sbjct: 20337936 cgtcggcggcgacctcgcgccggc 20337913
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Plus Query: 240 caggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatgac 299 |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 21293254 caggttccaaaggccccctggtgcattgccatcatctatgctaggatacgaggcgctgac 21293313 Query: 300 aggttccttggatgattttggatttgaagatta 332 ||||||||||||||||| || ||||||||||| Sbjct: 21293314 tggttccttggatgatttcgggtttgaagatta 21293346 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| || ||| |||| ||||||| | || ||||||||||||||||| ||| Sbjct: 21291383 ccaagttctgggcggataag-aagaggttcggggcggaagccatctacggatccgctttc 21291441 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 |||||||||||||||||||| ||||| |||||||||| Sbjct: 21291442 aacatccgcaaggatctcgatgcccaaatcctctcca 21291478 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 373 gacatgcaccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagt 432 |||||||||||||| ||||||||||||||||| |||| |||||||| || ||||| ||| Sbjct: 21294048 gacatgcaccacggaatggaggttcgccttggtttgtcaaagggaccgatttgccctagt 21294107 Query: 433 ttcaattgatt 443 ||||||||||| Sbjct: 21294108 ttcaattgatt 21294118 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 |||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| Sbjct: 21291203 ccacgacgtgctcctcttcggcgtcaacaacagcgtcaagggcgacctcgcgccgcagca 21291262 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| || ||||||||| Sbjct: 21291263 cccgatccaggccaccgtccacaagg 21291288
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079G12 Length = 139796 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Plus Query: 240 caggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatgac 299 |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 105535 caggttccaaaggccccctggtgcattgccatcatctatgctaggatacgaggcgctgac 105594 Query: 300 aggttccttggatgattttggatttgaagatta 332 ||||||||||||||||| || ||||||||||| Sbjct: 105595 tggttccttggatgatttcgggtttgaagatta 105627 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| || ||| |||| ||||||| | || ||||||||||||||||| ||| Sbjct: 103666 ccaagttctgggcggataag-aagaggttcggggcggaagccatctacggatccgctttc 103724 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 |||||||||||||||||||| ||||| |||||||||| Sbjct: 103725 aacatccgcaaggatctcgatgcccaaatcctctcca 103761 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 |||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| Sbjct: 103486 ccacgacgtgctccgcttcggcttcaacaacagcgtcaagggcgacctcgcgccgcagca 103545 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| || ||||||||| Sbjct: 103546 cccgatccaggccaccgtccacaagg 103571 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 373 gacatgcaccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagt 432 |||||||||||||| |||||||||| |||||| |||| |||||||| || ||||| ||| Sbjct: 106331 gacatgcaccacggaatggaggttctccttggtttgtcaaagggaccgatttgccctagt 106390 Query: 433 ttcaattgatt 443 ||||||||||| Sbjct: 106391 ttcaattgatt 106401
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Plus Query: 240 caggttccaaaggcccccaggtgcattgccatcatctatgctgggatatgaggcaatgac 299 |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 14121 caggttccaaaggccccctggtgcattgccatcatctatgctaggatacgaggcgctgac 14180 Query: 300 aggttccttggatgattttggatttgaagatta 332 ||||||||||||||||| || ||||||||||| Sbjct: 14181 tggttccttggatgatttcgggtttgaagatta 14213 Score = 97.6 bits (49), Expect = 4e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 145 ccaagttctgggacgacaagnaagaagttcgggaccgaggccatctacggatccgccttc 204 |||||||||||| || ||| |||| ||||||| | || ||||||||||||||||| ||| Sbjct: 12252 ccaagttctgggcggataag-aagaggttcggggcggaagccatctacggatccgctttc 12310 Query: 205 aacatccgcaaggatctcgacgcccagatcctctcca 241 |||||||||||||||||||| ||||| |||||||||| Sbjct: 12311 aacatccgcaaggatctcgatgcccaaatcctctcca 12347 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 55 ccacgacgtgctccgcttcggcgtcaacgacagcgtccgcggcgacctcgcgccggcgca 114 |||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| Sbjct: 12072 ccacgacgtgctccgcttcggcttcaacaacagcgtcaagggcgacctcgcgccgcagca 12131 Query: 115 ccccgtccaggccgccatccacaagg 140 ||| |||||||| || ||||||||| Sbjct: 12132 cccgatccaggccaccgtccacaagg 12157 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 373 gacatgcaccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagt 432 |||||||||||||| |||||||||| |||||| |||| |||||||| || ||||| ||| Sbjct: 14917 gacatgcaccacggaatggaggttctccttggtttgtcaaagggaccgatttgccctagt 14976 Query: 433 ttcaattgatt 443 ||||||||||| Sbjct: 14977 ttcaattgatt 14987
>dbj|AK099813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K24, full insert sequence Length = 2648 Score = 75.8 bits (38), Expect = 2e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 283 ggatatgaggcaatgacaggttccttggatgattttggatttgaagattaccttaact 340 |||||||||||| |||| |||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 4 ggatatgaggcactgactggttccttagatgattttgggtttgaagattatcttaact 61
>gb|AC103796.3| Homo sapiens chromosome 11, clone RP11-1033A18, complete sequence Length = 211799 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 591 ttttcagtttttggacttgtgttt 614 |||||||||||||||||||||||| Sbjct: 152858 ttttcagtttttggacttgtgttt 152881
>emb|AJ851434.1| Gallus gallus partial mRNA for hypothetical protein, clone 2l15 Length = 2918 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 310 gatgattttggatttgaagatta 332 ||||||||||||||||||||||| Sbjct: 257 gatgattttggatttgaagatta 279
>ref|NM_105394.2| Arabidopsis thaliana unknown protein AT1G67250 mRNA, complete cds Length = 677 Score = 44.1 bits (22), Expect = 0.54 Identities = 49/58 (84%) Strand = Plus / Plus Query: 379 caccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagtttca 436 |||||||||||||| ||||| |||||| | || |||||||| || | ||| ||||||| Sbjct: 449 caccacgggatggaagttcgtcttggcatctcaaagggaccgatttacccaagtttca 506
>gb|BT011933.1| Arabidopsis thaliana At1g67250 mRNA sequence Length = 423 Score = 44.1 bits (22), Expect = 0.54 Identities = 49/58 (84%) Strand = Plus / Plus Query: 379 caccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagtttca 436 |||||||||||||| ||||| |||||| | || |||||||| || | ||| ||||||| Sbjct: 361 caccacgggatggaagttcgtcttggcatctcaaagggaccgatttacccaagtttca 418
>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold Length = 501879 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 587 actgttttcagtttttggactt 608 |||||||||||||||||||||| Sbjct: 97311 actgttttcagtttttggactt 97290
>gb|AY044313.1| Arabidopsis thaliana Unknown protein (F1N21.15) mRNA, complete cds Length = 474 Score = 44.1 bits (22), Expect = 0.54 Identities = 49/58 (84%) Strand = Plus / Plus Query: 379 caccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagtttca 436 |||||||||||||| ||||| |||||| | || |||||||| || | ||| ||||||| Sbjct: 364 caccacgggatggaagttcgtcttggcatctcaaagggaccgatttacccaagtttca 421
>gb|AC092828.16| Homo sapiens 12 BAC RP11-282K24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127836 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 515 atggatttgtgaaacatgagaa 536 |||||||||||||||||||||| Sbjct: 101904 atggatttgtgaaacatgagaa 101925
>gb|BT003679.1| Arabidopsis thaliana At1g67250 mRNA, complete cds Length = 426 Score = 44.1 bits (22), Expect = 0.54 Identities = 49/58 (84%) Strand = Plus / Plus Query: 379 caccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagtttca 436 |||||||||||||| ||||| |||||| | || |||||||| || | ||| ||||||| Sbjct: 364 caccacgggatggaagttcgtcttggcatctcaaagggaccgatttacccaagtttca 421
>gb|AY086781.1| Arabidopsis thaliana clone 27632 mRNA, complete sequence Length = 604 Score = 44.1 bits (22), Expect = 0.54 Identities = 49/58 (84%) Strand = Plus / Plus Query: 379 caccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagtttca 436 |||||||||||||| ||||| |||||| | || |||||||| || | ||| ||||||| Sbjct: 432 caccacgggatggaagttcgtcttggcatctcgaagggaccgatttacccaagtttca 489
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 207 catccgcaaggatctcgacgcc 228 |||||||||||||||||||||| Sbjct: 5004005 catccgcaaggatctcgacgcc 5003984
>gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I, complete sequence Length = 114738 Score = 44.1 bits (22), Expect = 0.54 Identities = 49/58 (84%) Strand = Plus / Minus Query: 379 caccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagtttca 436 |||||||||||||| ||||| |||||| | || |||||||| || | ||| ||||||| Sbjct: 26741 caccacgggatggaagttcgtcttggcatctcaaagggaccgatttacccaagtttca 26684
>dbj|AK117205.1| Arabidopsis thaliana At1g67250 mRNA for unknown protein, complete cds, clone: RAFL16-75-L12 Length = 583 Score = 44.1 bits (22), Expect = 0.54 Identities = 49/58 (84%) Strand = Plus / Plus Query: 379 caccacgggatggaggttcgccttggcctgtccaagggacccatctgccccagtttca 436 |||||||||||||| ||||| |||||| | || |||||||| || | ||| ||||||| Sbjct: 444 caccacgggatggaagttcgtcttggcatctcaaagggaccgatttacccaagtttca 501
>ref|XM_468101.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 cctcgcgccggcgcaccccgt 120 ||||||||||||||||||||| Sbjct: 396 cctcgcgccggcgcaccccgt 416
>gb|AY020123.1| Oryza sativa microsatellite MRG2448 containing (CT)X19, genomic sequence Length = 238 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 agcggcgatggcgagcggcgg 23 ||||||||||||||||||||| Sbjct: 96 agcggcgatggcgagcggcgg 76
>gb|AC121564.4| Mus musculus BAC clone RP23-214I6 from 5, complete sequence Length = 190110 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 gtcactgttttcagtttttgg 604 ||||||||||||||||||||| Sbjct: 144088 gtcactgttttcagtttttgg 144108
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 agcggcgatggcgagcggcgg 23 ||||||||||||||||||||| Sbjct: 19988942 agcggcgatggcgagcggcgg 19988962 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gcggcgatggcgagcggcgg 23 |||||||||||||||||||| Sbjct: 1690881 gcggcgatggcgagcggcgg 1690862
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 cctcgcgccggcgcaccccgt 120 ||||||||||||||||||||| Sbjct: 102801 cctcgcgccggcgcaccccgt 102781
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 66 tccgcttcggcgtcaacgacagcgtccgcggcg 98 |||| ||||||| | |||||||||||||||||| Sbjct: 6430760 tccggttcggcgacgacgacagcgtccgcggcg 6430728
>dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1238_G07 Length = 78304 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 cctcgcgccggcgcaccccgt 120 ||||||||||||||||||||| Sbjct: 30576 cctcgcgccggcgcaccccgt 30596
>dbj|AK101966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H08, full insert sequence Length = 997 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 agcggcgatggcgagcggcgg 23 ||||||||||||||||||||| Sbjct: 59 agcggcgatggcgagcggcgg 79
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 agcggcgatggcgagcggcgg 23 ||||||||||||||||||||| Sbjct: 19915156 agcggcgatggcgagcggcgg 19915176 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gcggcgatggcgagcggcgg 23 |||||||||||||||||||| Sbjct: 1690859 gcggcgatggcgagcggcgg 1690840
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 agcggcgatggcgagcggcgg 23 ||||||||||||||||||||| Sbjct: 38318 agcggcgatggcgagcggcgg 38298
>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b, complete sequence Length = 45450 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 372 ggacatgcaccacgggatggaggttcgccttgg 404 ||||||||| || |||||||| ||||||||||| Sbjct: 33298 ggacatgcatcatgggatggaagttcgccttgg 33330
>gb|AC117665.6| Mus musculus chromosome 8, clone RP23-360I9, complete sequence Length = 217058 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 580 taatgtcactgttttcagtttttggactt 608 |||||||||||||| ||||||||| |||| Sbjct: 82814 taatgtcactgtttccagtttttgtactt 82842
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gatgattttggatttgaaga 329 |||||||||||||||||||| Sbjct: 1149743 gatgattttggatttgaaga 1149724
>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence Length = 244220 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 atgattttggatttgaagat 330 |||||||||||||||||||| Sbjct: 201798 atgattttggatttgaagat 201817
>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence Length = 173357 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 atgattttggatttgaagat 330 |||||||||||||||||||| Sbjct: 51675 atgattttggatttgaagat 51656
>emb|BX465201.38| Zebrafish DNA sequence from clone DKEY-15F11 in linkage group 14, complete sequence Length = 262688 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 575 gattgtaatgtcactgtttt 594 |||||||||||||||||||| Sbjct: 160674 gattgtaatgtcactgtttt 160655
>gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-284P20, complete sequence Length = 203967 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcctctccaggttccaaagg 252 |||||||||||||||||||| Sbjct: 21791 tcctctccaggttccaaagg 21772
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cggcgacctcgcgccggcgc 113 |||||||||||||||||||| Sbjct: 32524 cggcgacctcgcgccggcgc 32505
>emb|AL133338.8| Human DNA sequence from clone RP3-467N11 on chromosome 6q16.1-16.3 Contains the 5' end of the RNAH gene for an RNA helicase and a CpG island, complete sequence Length = 120314 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 600 tttggacttgtgtttatttc 619 |||||||||||||||||||| Sbjct: 175 tttggacttgtgtttatttc 156
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cttcaacatccgcaaggatc 220 |||||||||||||||||||| Sbjct: 113795 cttcaacatccgcaaggatc 113776
>gb|AC074194.6| Homo sapiens BAC clone RP11-739P1 from 4, complete sequence Length = 177273 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 587 actgttttcagtttttggacttgt 610 ||||||||||| |||||||||||| Sbjct: 67784 actgttttcagattttggacttgt 67807
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cttcaacatccgcaaggatc 220 |||||||||||||||||||| Sbjct: 28106570 cttcaacatccgcaaggatc 28106551
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 cgtccgcggcgacctcgcgccggc 111 |||| ||||||||||||||||||| Sbjct: 117063 cgtcggcggcgacctcgcgccggc 117040
>dbj|AK111543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043E12, full insert sequence Length = 1090 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 cgtccgcggcgacctcgcgccggc 111 |||| ||||||||||||||||||| Sbjct: 651 cgtcggcggcgacctcgcgccggc 628
>gb|U07366.1|CAU07366 Candida albicans translation initiation factor eIF-5A (TIF51) gene, complete cds Length = 1993 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 ttgattccacccatgtatta 457 |||||||||||||||||||| Sbjct: 1005 ttgattccacccatgtatta 986
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ccgcggcgacctcgcgccgg 110 |||||||||||||||||||| Sbjct: 358633 ccgcggcgacctcgcgccgg 358652
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gcggcgatggcgagcggcgg 23 |||||||||||||||||||| Sbjct: 76040 gcggcgatggcgagcggcgg 76059
>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91883 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gcggcgatggcgagcggcgg 23 |||||||||||||||||||| Sbjct: 2045 gcggcgatggcgagcggcgg 2064 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,233,830 Number of Sequences: 3902068 Number of extensions: 4233830 Number of successful extensions: 86945 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86367 Number of HSP's gapped (non-prelim): 570 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
