ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocy... 83 5e-18
2Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA int... 33 0.42
3ALG14_DEBHA (Q6BMD0) UDP-N-acetylglucosamine transferase subunit... 30 3.6

>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex|
            component Sec8)
          Length = 1053

 Score = 83.2 bits (204), Expect(2) = 5e-18
 Identities = 37/61 (60%), Positives = 49/61 (80%)
 Frame = +2

Query: 56   LDRVRTFYELLNLPFETLLGFIAEQEYLFSAKEYLSILKVNVPGREIPMDAERRISQILG 235
            LDRVRT++ELLN+PFE LL FIAE + +F+  EY ++LKVNVPGR+ P DA+ R+ +IL 
Sbjct: 993  LDRVRTYFELLNMPFEALLAFIAEHDQMFTPTEYSNLLKVNVPGRDTPSDAQSRLLEILS 1052

Query: 236  H 238
            H
Sbjct: 1053 H 1053



 Score = 26.6 bits (57), Expect(2) = 5e-18
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 3    QALAAIPSIDSEAVQQ 50
            QA+AAIP ID E VQQ
Sbjct: 976  QAMAAIPYIDGETVQQ 991



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>Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA intergenic|
           region
          Length = 83

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -3

Query: 475 LHPKYHTFTRIKNKRSIQNTTNLLSMRQQIVHYLPICRHQKKKPNRNNKINYSYKESR 302
           L+P Y T +  ++    + T +L+S+R +     P C H  KK N+ N + + Y + +
Sbjct: 21  LNPMYGTISPTRDVPHTKETRDLISLRTKQGAEYPPCPHCGKKVNKGNALRWHYDKCK 78



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>ALG14_DEBHA (Q6BMD0) UDP-N-acetylglucosamine transferase subunit ALG14 (EC|
           2.4.1.-) (Asparagine linked glycosylation protein 14)
          Length = 232

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 56  LDRVRTFYELLNLP-FETLLGFIAEQEYLFSAKEYLSILKVNVPGREIPM 202
           L R RT  E + L  F T+   I+  ++L+   ++ SIL +N PG  +P+
Sbjct: 119 LHRARTVGESIILSVFSTVRSLISTIKHLYELPQFPSILLLNGPGTSVPL 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,962,758
Number of Sequences: 219361
Number of extensions: 977033
Number of successful extensions: 2236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2234
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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