ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9a09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E23, full insert sequence Length = 3546 Score = 206 bits (104), Expect = 5e-50 Identities = 216/251 (86%), Gaps = 2/251 (0%) Strand = Plus / Plus Query: 1 aacaggcacttgcagccataccttccattgatagtgaggcagtccaacagnagnattaga 60 ||||||| || ||||||||||| || ||||| ||||| || ||||||||| || || ||| Sbjct: 3024 aacaggctctggcagccataccctcaattgacagtgaagccgtccaacag-agaat-aga 3081 Query: 61 tcgcgttcggacattctatgagctattaaacctgccttttgagactttgcttgggttcat 120 ||| |||||||||||||| || || || || ||||||| ||| |||||||||| || || Sbjct: 3082 tcgtgttcggacattctacgaactcttgaatttgcctttcgagtctttgcttggatttat 3141 Query: 121 tgctgaacaggaatatttattttctgcaaaagaatacttaagcatactaaaggtcaatgt 180 ||| ||||| ||||||||||||||||||||||||||||| ||| | |||||||||| || Sbjct: 3142 tgcagaacatgaatatttattttctgcaaaagaatacttgagcgtgttaaaggtcaacgt 3201 Query: 181 acctggtagagagataccaatggatgctgaacgacgtatctcacagattttgggccatta 240 ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 3202 tcctggaagagagatgccaatggatgctgaacgacgcatctctcagattttgggccatta 3261 Query: 241 aattgaattgg 251 || ||||||| Sbjct: 3262 aaacgaattgg 3272
>ref|XM_481557.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1278 Score = 202 bits (102), Expect = 8e-49 Identities = 208/241 (86%), Gaps = 2/241 (0%) Strand = Plus / Plus Query: 1 aacaggcacttgcagccataccttccattgatagtgaggcagtccaacagnagnattaga 60 ||||||| || ||||||||||| || ||||| ||||| || ||||||||| || || ||| Sbjct: 1040 aacaggctctggcagccataccctcaattgacagtgaagccgtccaacag-agaat-aga 1097 Query: 61 tcgcgttcggacattctatgagctattaaacctgccttttgagactttgcttgggttcat 120 ||| |||||||||||||| || || || || ||||||| ||| |||||||||| || || Sbjct: 1098 tcgtgttcggacattctacgaactcttgaatttgcctttcgagtctttgcttggatttat 1157 Query: 121 tgctgaacaggaatatttattttctgcaaaagaatacttaagcatactaaaggtcaatgt 180 ||| ||||| ||||||||||||||||||||||||||||| ||| | |||||||||| || Sbjct: 1158 tgcagaacatgaatatttattttctgcaaaagaatacttgagcgtgttaaaggtcaacgt 1217 Query: 181 acctggtagagagataccaatggatgctgaacgacgtatctcacagattttgggccatta 240 ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 1218 tcctggaagagagatgccaatggatgctgaacgacgcatctctcagattttgggccatta 1277 Query: 241 a 241 | Sbjct: 1278 a 1278
>gb|AY224584.1| Oryza sativa (japonica cultivar-group) isolate 30858 unknown mRNA Length = 1704 Score = 202 bits (102), Expect = 8e-49 Identities = 208/241 (86%), Gaps = 2/241 (0%) Strand = Plus / Plus Query: 1 aacaggcacttgcagccataccttccattgatagtgaggcagtccaacagnagnattaga 60 ||||||| || ||||||||||| || ||||| ||||| || ||||||||| || || ||| Sbjct: 1466 aacaggctctggcagccataccctcaattgacagtgaagccgtccaacag-agaat-aga 1523 Query: 61 tcgcgttcggacattctatgagctattaaacctgccttttgagactttgcttgggttcat 120 ||| |||||||||||||| || || || || ||||||| ||| |||||||||| || || Sbjct: 1524 tcgtgttcggacattctacgaactcttgaatttgcctttcgagtctttgcttggatttat 1583 Query: 121 tgctgaacaggaatatttattttctgcaaaagaatacttaagcatactaaaggtcaatgt 180 ||| ||||| ||||||||||||||||||||||||||||| ||| | |||||||||| || Sbjct: 1584 tgcagaacatgaatatttattttctgcaaaagaatacttgagcgtgttaaaggtcaacgt 1643 Query: 181 acctggtagagagataccaatggatgctgaacgacgtatctcacagattttgggccatta 240 ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 1644 tcctggaagagagatgccaatggatgctgaacgacgcatctctcagattttgggccatta 1703 Query: 241 a 241 | Sbjct: 1704 a 1704
>gb|AY107186.1| Zea mays PCO133868 mRNA sequence Length = 1187 Score = 192 bits (97), Expect = 8e-46 Identities = 200/234 (85%), Gaps = 2/234 (0%) Strand = Plus / Plus Query: 1 aacaggcacttgcagccataccttccattgatagtgaggcagtccaacagnagnattaga 60 ||||||| ||||||||||||||||| || |||||||| |||||||||||| ||| || Sbjct: 649 aacaggctcttgcagccataccttcaatagatagtgaagcagtccaacagc--gattgga 706 Query: 61 tcgcgttcggacattctatgagctattaaacctgccttttgagactttgcttgggttcat 120 ||||||||| || ||||||||| | ||||| ||||||||||| |||||||||| ||||| Sbjct: 707 tcgcgttcgaacgttctatgagttgttaaatttgccttttgagtctttgcttggattcat 766 Query: 121 tgctgaacaggaatatttattttctgcaaaagaatacttaagcatactaaaggtcaatgt 180 || ||||| |||||||| |||||||| ||||||||| | || | |||||||||||||| Sbjct: 767 cgcagaacatgaatatttgttttctgctaaagaatacctgagtgttctaaaggtcaatgt 826 Query: 181 acctggtagagagataccaatggatgctgaacgacgtatctcacagattttggg 234 || |||||||| ||||| ||||||||||||||| ||||||||||||||||| Sbjct: 827 gccgggtagagaaatacctgcggatgctgaacgacgcatctcacagattttggg 880
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 103 bits (52), Expect = 5e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 168 taaaggtcaatgtacctggtagagagataccaatggatgctgaacgacgtatctcacaga 227 |||||||||| || ||||| |||||||| |||||||||||||||||||| ||||| |||| Sbjct: 13733600 taaaggtcaacgttcctggaagagagatgccaatggatgctgaacgacgcatctctcaga 13733541 Query: 228 ttttgggccattaaattgaattgg 251 ||||||||||||||| ||||||| Sbjct: 13733540 ttttgggccattaaaacgaattgg 13733517 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 105 ctttgcttgggttcattgctgaacaggaatatttattttctgcaaaaga 153 |||||||||| || ||||| ||||| ||||||||||||||||||||||| Sbjct: 13733748 ctttgcttggatttattgcagaacatgaatatttattttctgcaaaaga 13733700 Score = 50.1 bits (25), Expect = 0.007 Identities = 65/76 (85%), Gaps = 2/76 (2%) Strand = Plus / Minus Query: 3 caggcacttgcagccataccttccattgatagtgaggcagtccaacagnagnattagatc 62 ||||| || ||||||||||| || ||||| ||||| || ||||||||| || | |||||| Sbjct: 13733921 caggctctggcagccataccctcaattgacagtgaagccgtccaacag-agaa-tagatc 13733864 Query: 63 gcgttcggacattcta 78 | |||||||||||||| Sbjct: 13733863 gtgttcggacattcta 13733848
>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0406D01 Length = 163932 Score = 103 bits (52), Expect = 5e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 168 taaaggtcaatgtacctggtagagagataccaatggatgctgaacgacgtatctcacaga 227 |||||||||| || ||||| |||||||| |||||||||||||||||||| ||||| |||| Sbjct: 47669 taaaggtcaacgttcctggaagagagatgccaatggatgctgaacgacgcatctctcaga 47610 Query: 228 ttttgggccattaaattgaattgg 251 ||||||||||||||| ||||||| Sbjct: 47609 ttttgggccattaaaacgaattgg 47586 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 105 ctttgcttgggttcattgctgaacaggaatatttattttctgcaaaaga 153 |||||||||| || ||||| ||||| ||||||||||||||||||||||| Sbjct: 47817 ctttgcttggatttattgcagaacatgaatatttattttctgcaaaaga 47769 Score = 50.1 bits (25), Expect = 0.007 Identities = 65/76 (85%), Gaps = 2/76 (2%) Strand = Plus / Minus Query: 3 caggcacttgcagccataccttccattgatagtgaggcagtccaacagnagnattagatc 62 ||||| || ||||||||||| || ||||| ||||| || ||||||||| || | |||||| Sbjct: 47990 caggctctggcagccataccctcaattgacagtgaagccgtccaacag-agaa-tagatc 47933 Query: 63 gcgttcggacattcta 78 | |||||||||||||| Sbjct: 47932 gtgttcggacattcta 47917
>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1, complete sequence Length = 180744 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 328 ttttgttatttctgtttggtttt 350 ||||||||||||||||||||||| Sbjct: 7348 ttttgttatttctgtttggtttt 7326
>emb|AL445526.9| Human DNA sequence from clone RP11-32I2 on chromosome 9 Contains a pseudogene similar to part of tumor necrosis factor, alpha-induced protein 1 (endothelial) (TNFAIP1) (EDP1), complete sequence Length = 127029 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 atgtctacatataggtaggtaa 380 |||||||||||||||||||||| Sbjct: 113211 atgtctacatataggtaggtaa 113190
>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence Length = 196717 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 333 ttatttctgtttggttttttcttttg 358 |||||||||||||||||||| ||||| Sbjct: 100780 ttatttctgtttggttttttgttttg 100755
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 327 attttgttatttctgtttggtttttt 352 ||||||||||||||||||| |||||| Sbjct: 1231229 attttgttatttctgtttgttttttt 1231254
>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete sequence Length = 165720 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 tttgttatttctgtttggtttt 350 |||||||||||||||||||||| Sbjct: 137438 tttgttatttctgtttggtttt 137459
>gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, complete sequence Length = 237273 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 323 gttaattttgttatttctgtttggttttt 351 |||| ||||||||||||||||| |||||| Sbjct: 187836 gttagttttgttatttctgttttgttttt 187808
>gb|AC103388.6| Mus musculus chromosome 7, clone RP24-403B15, complete sequence Length = 164394 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 454 atgtgtgatattttgggtgtaattt 478 |||||||| |||||||||||||||| Sbjct: 41124 atgtgtgaaattttgggtgtaattt 41148
>gb|AC102676.16| Mus musculus chromosome 14, clone RP23-266L19, complete sequence Length = 190298 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 tatttattttctgcaaaagaa 154 ||||||||||||||||||||| Sbjct: 8088 tatttattttctgcaaaagaa 8068
>ref|XM_534392.2| PREDICTED: Canis familiaris similar to Nuclear receptor coactivator 6 (Amplified in breast cancer-3 protein) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator-2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (PPAR-..., transcript variant 1 (LOC477202), mRNA Length = 6872 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 cttgatccttgtaaatgtgtg 460 ||||||||||||||||||||| Sbjct: 6348 cttgatccttgtaaatgtgtg 6368
>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence Length = 202652 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 tttgttatttctgtttggttttttctttt 357 ||||| |||||||||||| |||||||||| Sbjct: 133273 tttgtaatttctgtttggatttttctttt 133245
>gb|AC093449.19| Mus musculus strain 129/Sv clone ct7-328a16 map X, complete sequence Length = 153728 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 ctttctttgtagctgtagtta 326 ||||||||||||||||||||| Sbjct: 44439 ctttctttgtagctgtagtta 44419
>emb|AL590678.3| Human DNA sequence from clone RP11-141E7 on chromosome 6, complete sequence Length = 149849 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 aacaggaatatttattttctg 146 ||||||||||||||||||||| Sbjct: 145160 aacaggaatatttattttctg 145180
>gb|AC115007.6| Mus musculus chromosome 5, clone RP24-188P11, complete sequence Length = 155084 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 323 gttaattttgttatttctgtttggttttt 351 |||| ||||||||||||||||| |||||| Sbjct: 75581 gttagttttgttatttctgttttgttttt 75553
>dbj|AK053908.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130320C01 product:unclassifiable, full insert sequence Length = 2644 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 tttgttatttctgtttggttttttctttt 357 ||||| |||||||||||| |||||||||| Sbjct: 1253 tttgtaatttctgtttggatttttctttt 1225
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 ttttgttatttctgtttggtttttt 352 ||||||||||||||||||| ||||| Sbjct: 26566882 ttttgttatttctgtttggattttt 26566906
>gb|AC116098.3| Homo sapiens chromosome 3 clone CTD-2329B17, complete sequence Length = 120591 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 gatgtctcacagtatcttcct 302 ||||||||||||||||||||| Sbjct: 87942 gatgtctcacagtatcttcct 87962
>gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, complete sequence Length = 151006 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgtagctgtagttaattttgt 333 ||||||||||||||||||||| Sbjct: 112079 tgtagctgtagttaattttgt 112099
>gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155150 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 gatgtctcacagtatcttcct 302 ||||||||||||||||||||| Sbjct: 146857 gatgtctcacagtatcttcct 146837
>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05 Length = 161934 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 ttttgttatttctgtttggtttttt 352 ||||||||||||||||||| ||||| Sbjct: 40596 ttttgttatttctgtttggattttt 40620
>emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathyroid hormone receptor 1, exons 1-13 Length = 31774 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 324 ttaattttgttatttctgtttggtttttt 352 ||||||| ||||||||| ||||||||||| Sbjct: 29834 ttaatttggttatttctttttggtttttt 29806
>gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, complete sequence Length = 168884 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 acaggcacttgcagccatacc 22 ||||||||||||||||||||| Sbjct: 66235 acaggcacttgcagccatacc 66215
>emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chromosome X, complete sequence Length = 197632 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 ctttctttgtagctgtagtta 326 ||||||||||||||||||||| Sbjct: 46869 ctttctttgtagctgtagtta 46849
>ref|NM_123438.2| Arabidopsis thaliana AGP24 AT5G40730 (AGP24) mRNA, complete cds Length = 446 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 47 tttggttttttcttttgatg 28
>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence Length = 164968 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ttttgttatttctgtttggttttt 351 ||||||| |||||||||||||||| Sbjct: 44936 ttttgttgtttctgtttggttttt 44913
>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence Length = 197551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 atttgtggtattttgaatgg 429 |||||||||||||||||||| Sbjct: 29786 atttgtggtattttgaatgg 29805
>ref|NM_007332.1| Homo sapiens transient receptor potential cation channel, subfamily A, member 1 (TRPA1), mRNA Length = 5190 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 ttttttcttttgatgtctac 366 |||||||||||||||||||| Sbjct: 4309 ttttttcttttgatgtctac 4328
>gb|AY672745.1| Allium sativum LEAFY splice variant 2 mRNA, partial cds, alternatively spliced Length = 570 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tttctgtttggttttttctt 355 |||||||||||||||||||| Sbjct: 320 tttctgtttggttttttctt 301
>gb|AY563104.1| Allium sativum floral meristem identity control protein gene, partial cds Length = 682 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tttctgtttggttttttctt 355 |||||||||||||||||||| Sbjct: 340 tttctgtttggttttttctt 321
>gb|AY563105.1| Allium sativum LEAFY spliced variant 1 mRNA, partial cds Length = 506 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tttctgtttggttttttctt 355 |||||||||||||||||||| Sbjct: 257 tttctgtttggttttttctt 238
>gb|AC145132.2| Homo sapiens chromosome 5 clone RP11-1113N2, complete sequence Length = 150263 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 aacaggaatatttattttct 145 |||||||||||||||||||| Sbjct: 86051 aacaggaatatttattttct 86070
>ref|XM_647361.1| Entamoeba histolytica HM-1:IMSS pre-mRNA splicing factor PRP17, putative (117.t00032) partial mRNA Length = 1203 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 taattttgttatttctgttt 344 |||||||||||||||||||| Sbjct: 501 taattttgttatttctgttt 520
>gb|AC145145.2| Homo sapiens chromosome 5 clone RP11-14E21, complete sequence Length = 174962 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 aacaggaatatttattttct 145 |||||||||||||||||||| Sbjct: 148564 aacaggaatatttattttct 148583
>gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, complete sequence Length = 176176 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 atttgtggtattttgaatgg 429 |||||||||||||||||||| Sbjct: 133809 atttgtggtattttgaatgg 133828
>ref|XM_758525.1| Theileria parva strain Muguga chromosome 3 hypothetical protein (TP03_0590) partial mRNA Length = 4743 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 cttgatccttgtaaatgtgtgata 463 ||||| |||||||||||||||||| Sbjct: 2257 cttgagccttgtaaatgtgtgata 2234
>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 241078 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gttttttcttttgatgtcta 365 |||||||||||||||||||| Sbjct: 8542 gttttttcttttgatgtcta 8523
>emb|AL645488.6| Human DNA sequence from clone RP11-33J1 on chromosome 1 Contains a CpG island, complete sequence Length = 105641 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaatatttattttctgcaaa 150 |||||||||||||||||||| Sbjct: 100730 gaatatttattttctgcaaa 100711
>emb|AL161787.13| Human DNA sequence from clone RP11-40C6 on chromosome 9 Contains the 5' end of the DAPK1 gene for death-associated protein kinase 1, a ribosomal protein S29 (RPS29) pseudogene, part of a novel gene and a CpG island, complete sequence Length = 119811 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aatatttattttctgcaaaa 151 |||||||||||||||||||| Sbjct: 44768 aatatttattttctgcaaaa 44749
>emb|AL136372.8| Human DNA sequence from clone RP11-134C1 on chromosome 1q25.1-31.1 Contains a zinc finger protein pseudogene, complete sequence Length = 165880 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 ttgtaaatgtgtgatatttt 467 |||||||||||||||||||| Sbjct: 82921 ttgtaaatgtgtgatatttt 82940
>emb|Y10601.1|HSRNAALP Homo sapiens mRNA for ankyrin-like protein Length = 5190 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 ttttttcttttgatgtctac 366 |||||||||||||||||||| Sbjct: 4309 ttttttcttttgatgtctac 4328
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tagttaattttgttatttctgttt 344 ||||||| |||||||||||||||| Sbjct: 101708 tagttaaatttgttatttctgttt 101685
>gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, complete sequence Length = 201279 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ttctgtttggttttttcttt 356 |||||||||||||||||||| Sbjct: 168444 ttctgtttggttttttcttt 168463
>gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, complete sequence Length = 175943 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ttctgtttggttttttcttt 356 |||||||||||||||||||| Sbjct: 111642 ttctgtttggttttttcttt 111661
>emb|BX284634.8| Mouse DNA sequence from clone RP23-92B18 on chromosome 11 Contains the 3' end of the gene for a novel protein (C330012F17Rik, C130096N06Rik), the gene for a novel protein (2010316F05Rik), a novel gene, the Mtif2 gene for mitochondrial translational initiation factor 2, the Rps27a gene for ribosomal protein S27a, a ribosomal protein L7 (Rpl7) pseudogene, the gene for a novel protein (1700034F02Rik), a novel gene and a CpG island, complete sequence Length = 176038 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttatttctgtttggttttttcttt 356 |||||||||||||||||| ||||| Sbjct: 44173 ttatttctgtttggttttctcttt 44196
>emb|CR859616.1| Pongo pygmaeus mRNA; cDNA DKFZp468J165 (from clone DKFZp468J165) Length = 2880 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ggttttttcttttgatgtct 364 |||||||||||||||||||| Sbjct: 1117 ggttttttcttttgatgtct 1098
>gb|AC093223.3| Homo sapiens chromosome 5 clone CTD-2220G6, complete sequence Length = 125980 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 aacaggaatatttattttct 145 |||||||||||||||||||| Sbjct: 43454 aacaggaatatttattttct 43473
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence Length = 93868 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 atatttattttctgcaaaag 152 |||||||||||||||||||| Sbjct: 27213 atatttattttctgcaaaag 27232
>gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, complete sequence Length = 196931 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 ttttttcttttgatgtctac 366 |||||||||||||||||||| Sbjct: 186030 ttttttcttttgatgtctac 186011
>gb|AY070748.1| Arabidopsis thaliana AT5g40730/MNF13_250 mRNA sequence Length = 383 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 41 tttggttttttcttttgatg 22
>gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, complete sequence Length = 197785 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 ttttttcttttgatgtctac 366 |||||||||||||||||||| Sbjct: 115339 ttttttcttttgatgtctac 115320
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atttattttctgcaaaagaa 154 |||||||||||||||||||| Sbjct: 858118 atttattttctgcaaaagaa 858137
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 tagttaattttgttatttctgttt 344 ||||||| |||||||||||||||| Sbjct: 16558534 tagttaaatttgttatttctgttt 16558557
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tgtagttaattttgttattt 338 |||||||||||||||||||| Sbjct: 2061388 tgtagttaattttgttattt 2061407
>emb|BX833524.1|CNS09Z9Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL60ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 417 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 34 tttggttttttcttttgatg 15
>emb|BX834072.1|CNS09Z1K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL94ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 408 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 32 tttggttttttcttttgatg 13
>emb|BX833879.1|CNS09Z5C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL81ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 412 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 24 tttggttttttcttttgatg 5
>emb|BX833352.1|CNS09Z2W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZC02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 419 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 37 tttggttttttcttttgatg 18
>emb|BX833320.1|CNS09Z2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL44ZE11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 416 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 34 tttggttttttcttttgatg 15
>emb|BX832950.1|CNS09Z4D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL25ZE12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 419 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 37 tttggttttttcttttgatg 18
>emb|BX832847.1|CNS09Z57 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL17ZD01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 421 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 39 tttggttttttcttttgatg 20
>gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163700 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 aattttgttatttctgtttg 345 |||||||||||||||||||| Sbjct: 47096 aattttgttatttctgtttg 47077
>gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178453 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 aattttgttatttctgtttg 345 |||||||||||||||||||| Sbjct: 15623 aattttgttatttctgtttg 15642
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13 Length = 85992 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttggttttttcttttgatg 361 |||||||||||||||||||| Sbjct: 75882 tttggttttttcttttgatg 75863
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24, complete sequence Length = 213091 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tctgtttggttttttctttt 357 |||||||||||||||||||| Sbjct: 39439 tctgtttggttttttctttt 39458
>dbj|AP003386.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-699F16, complete sequence Length = 72000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tctgtttggttttttctttt 357 |||||||||||||||||||| Sbjct: 19361 tctgtttggttttttctttt 19380
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tatcttcctcggctttcttt 313 |||||||||||||||||||| Sbjct: 937293 tatcttcctcggctttcttt 937274
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 atttattttctgcaaaagaa 154 |||||||||||||||||||| Sbjct: 3372611 atttattttctgcaaaagaa 3372592
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 tagttaattttgttatttctgttt 344 ||||||| |||||||||||||||| Sbjct: 16566775 tagttaaatttgttatttctgttt 16566798
>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete sequence Length = 209053 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tttctgcaaaagaatactta 160 |||||||||||||||||||| Sbjct: 38204 tttctgcaaaagaatactta 38185
>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete sequence Length = 190964 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gtttggttttttcttttgat 360 |||||||||||||||||||| Sbjct: 68943 gtttggttttttcttttgat 68962
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tgtagttaattttgttattt 338 |||||||||||||||||||| Sbjct: 28229 tgtagttaattttgttattt 28248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,616,882 Number of Sequences: 3902068 Number of extensions: 6616882 Number of successful extensions: 147258 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 146784 Number of HSP's gapped (non-prelim): 468 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
