ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9a08 |
|---|---|
| Clone Library Name | barley_pub |
>BCS1_YEAST (P32839) Mitochondrial chaperone BCS1| Length = 456 Score = 101 bits (251), Expect = 2e-21 Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 1/155 (0%) Frame = +2 Query: 152 TLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRF 331 ++ +D G+K+ +LDD+ F+K ++Y G ++RGYLLYGPPG+GK+S + A+A L + Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286 Query: 332 NLYDLDLSSVH-DNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRD 508 N+ L+LS + + L L+ +M +SIL++EDID +F+ S+ + Sbjct: 287 NICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTGEQ------------ 334 Query: 509 YRTGGERKITLSGLLNFIDGLWSTSGEERIMIFTT 613 G +T SGLLN +DG+ TS EE I TT Sbjct: 335 ---GFHSSVTFSGLLNALDGV--TSSEETITFMTT 364
>BCS1_SCHPO (Q9P6Q3) Probable mitochondrial chaperone BCS1 (BCS1-like protein)| Length = 449 Score = 90.9 bits (224), Expect = 3e-18 Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 4/164 (2%) Frame = +2 Query: 134 HPAS---FETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLV 304 HP S ++ ++ +K+ + DD+ FL+ ++Y G ++RGYLLYGPPG+GK+S + Sbjct: 200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFL 259 Query: 305 AAMANYLRFNLYDLDLSSVH-DNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHS 481 A+A L +++ L+L+ + L LL ++ K+++++ED+D +F RE Sbjct: 260 YALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAF--QGRE------ 311 Query: 482 LEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSGEERIMIFTT 613 R G +T SGLLN +DG+ TS +ERI+ TT Sbjct: 312 -------RSGEVGFHANVTFSGLLNALDGV--TSSDERIIFMTT 346
>BCS1_XENLA (Q7ZTL7) Mitochondrial chaperone BCS1 (BCS1-like protein)| Length = 419 Score = 89.7 bits (221), Expect = 6e-18 Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 1/155 (0%) Frame = +2 Query: 152 TLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRF 331 ++ ++ G+ + ++ D+ F++ ++Y G ++RGYLLYGPPG GKSS + A+A L + Sbjct: 190 SVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEY 249 Query: 332 NLYDLDLS-SVHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRD 508 ++ + LS S + L LL +SI+++ED+D +F +SR+ K + + GR Sbjct: 250 SICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAF--VSRDLNKQNPTAYQGMGR- 306 Query: 509 YRTGGERKITLSGLLNFIDGLWSTSGEERIMIFTT 613 +T SGLLN +DG+ ST E RI+ TT Sbjct: 307 --------LTFSGLLNALDGVAST--EARIVFMTT 331
>BCS1_BRARE (Q7ZV60) Mitochondrial chaperone BCS1 (BCS1-like protein)| Length = 420 Score = 86.7 bits (213), Expect = 5e-17 Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 2/156 (1%) Frame = +2 Query: 152 TLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRF 331 ++ ++ G+ + ++DD+ F+ ++Y G ++RGYLLYGPPG GKSS + A+A L + Sbjct: 190 SVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGY 249 Query: 332 NLYDLDLS--SVHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGR 505 ++ + LS S+ D+ L LL +SI+++ED+D +F +SRE L ++ Sbjct: 250 SICLMSLSDRSLSDD-RLNHLLSVAPQQSIILLEDVDAAF--VSRE------LLPTENPL 300 Query: 506 DYRTGGERKITLSGLLNFIDGLWSTSGEERIMIFTT 613 Y+ G ++T SGLLN +DG+ S E RI+ TT Sbjct: 301 AYQ--GMGRLTFSGLLNALDGV--ASSEARIVFMTT 332
>BCS1_MOUSE (Q9CZP5) Mitochondrial chaperone BCS1 (BCS1-like protein)| Length = 418 Score = 84.7 bits (208), Expect = 2e-16 Identities = 55/157 (35%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Frame = +2 Query: 149 ETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR 328 +++ + GL ++ D+ F+ ++Y G ++RGYLLYGPPG GKSS + A+A L Sbjct: 189 DSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 248 Query: 329 FNLYDLDL--SSVHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDG 502 ++ L L SS+ D+ L LL +S++++ED+D +F +SR+ ++ ++ + G Sbjct: 249 HSICLLSLTDSSLSDD-RLNHLLSVAPQQSLVLLEDVDAAF--LSRDLAVENPIKYQGLG 305 Query: 503 RDYRTGGERKITLSGLLNFIDGLWSTSGEERIMIFTT 613 R +T SGLLN +DG+ ST E RI+ TT Sbjct: 306 R---------LTFSGLLNALDGVAST--EARIVFMTT 331
>BCS1_HUMAN (Q9Y276) Mitochondrial chaperone BCS1 (BCS1-like protein) (H-BCS1)| Length = 419 Score = 84.3 bits (207), Expect = 3e-16 Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Frame = +2 Query: 152 TLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRF 331 ++ + GL ++ D+ F+ ++Y G ++RGYLLYGPPG GKSS + A+A L Sbjct: 190 SVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEH 249 Query: 332 NLYDLDL--SSVHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGR 505 ++ L L SS+ D+ L LL +S++++ED+D +F +SR+ ++ ++ + GR Sbjct: 250 SICLLSLTDSSLSDD-RLNHLLSVAPQQSLVLLEDVDAAF--LSRDLAVENPVKYQGLGR 306 Query: 506 DYRTGGERKITLSGLLNFIDGLWSTSGEERIMIFTT 613 +T SGLLN +DG+ ST E RI+ TT Sbjct: 307 ---------LTFSGLLNALDGVAST--EARIVFMTT 331
>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)| Length = 439 Score = 54.3 bits (129), Expect = 3e-07 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L EYY+ +G +G +LYGPPGTGK+ L A+AN +LR + Sbjct: 194 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 253 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D L R L ++ + SI+ I++ID D Sbjct: 254 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV----------------GTKRYDSN 297 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +GGER+I T+ LLN +DG + + G+ ++++ T Sbjct: 298 SGGEREIQRTMLELLNQLDG-FDSRGDVKVIMAT 330
>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 54.3 bits (129), Expect = 3e-07 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L EYY+ +G +G +LYGPPGTGK+ L A+AN +LR + Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 254 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D L R L ++ + SI+ I++ID D Sbjct: 255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAI----------------GTKRYDSN 298 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +GGER+I T+ LLN +DG + + G+ ++++ T Sbjct: 299 SGGEREIQRTMLELLNQLDG-FDSRGDVKVIMAT 331
>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 54.3 bits (129), Expect = 3e-07 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L EYY+ +G +G +LYGPPGTGK+ L A+AN +LR + Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 254 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D L R L ++ + SI+ I++ID D Sbjct: 255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAI----------------GTKRYDSN 298 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +GGER+I T+ LLN +DG + + G+ ++++ T Sbjct: 299 SGGEREIQRTMLELLNQLDG-FDSRGDVKVIMAT 331
>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 54.3 bits (129), Expect = 3e-07 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L EYY+ +G +G +LYGPPGTGK+ L A+AN +LR + Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 254 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D L R L ++ + SI+ I++ID D Sbjct: 255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAI----------------GTKRYDSN 298 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +GGER+I T+ LLN +DG + + G+ ++++ T Sbjct: 299 SGGEREIQRTMLELLNQLDG-FDSRGDVKVIMAT 331
>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 54.3 bits (129), Expect = 3e-07 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L EYY+ +G +G +LYGPPGTGK+ L A+AN +LR + Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 254 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D L R L ++ + SI+ I++ID D Sbjct: 255 LIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAI----------------GTKRYDSN 298 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +GGER+I T+ LLN +DG + + G+ ++++ T Sbjct: 299 SGGEREIQRTMLELLNQLDG-FDSRGDVKVIMAT 331
>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 436 Score = 51.2 bits (121), Expect = 2e-06 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 10/134 (7%) Frame = +2 Query: 197 LDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSV 361 +++ LK E ++++G +G LLYGPPGTGK+ L A+AN ++R +L + Sbjct: 195 VEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFI 254 Query: 362 HDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 + + L R L +++ + SI+ I++ID R+ T G+R+ Sbjct: 255 GEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRD----------------ATSGDRE 298 Query: 533 I--TLSGLLNFIDG 568 + TL+ LL +DG Sbjct: 299 VQRTLTQLLAEMDG 312
>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog| Length = 423 Score = 50.4 bits (119), Expect = 4e-06 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 10/152 (6%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLY 340 KQ + + ++ L + + Y++IG RG LLYGPPGTGK+ LV A+AN ++R N Sbjct: 175 KQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGS 234 Query: 341 DLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDY 511 + + + + R + M+ + +I+ I++ID D Sbjct: 235 EFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRF----------------DA 278 Query: 512 RTGGERKI--TLSGLLNFIDGLWSTSGEERIM 601 +TG +R++ L LLN +DG +S + IM Sbjct: 279 QTGADREVQRILLELLNQMDGFEQSSNVKVIM 310
>FTSH_HELFE (O32617) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 638 Score = 50.4 bits (119), Expect = 4e-06 Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 10/181 (5%) Frame = +2 Query: 98 YGYGSWQG-INHHHP-ASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLY 271 +G GS + IN P F +A + K+ V++ +D FLK + Y +G +G LL Sbjct: 157 FGMGSSKKLINAEKPKVRFNDMAGNEEAKEEVVEIVD-FLKYPDRYASLGAKIPKGVLLV 215 Query: 272 GPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNK---SILVIE 427 GPPGTGK+ L A+A + + SS V +S R L D++ K SI+ I+ Sbjct: 216 GPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFID 275 Query: 428 DIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSGEERIMIF 607 +ID K + G D ER+ TL+ LL +DG S + ++ Sbjct: 276 EIDAI--------GKSRAAGGMISGND-----EREQTLNQLLAEMDGFGSENAPVIVLAA 322 Query: 608 T 610 T Sbjct: 323 T 323
>PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (TAT-binding| protein homolog) Length = 414 Score = 50.4 bits (119), Expect = 4e-06 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Frame = +2 Query: 140 ASFETLA-MDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 A++E + +D +K+ + + ++ +K E ++ +G A +G ++YGPPGTGK+ L A+A Sbjct: 153 ATYEMVGGLDEQIKE-IKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVA 211 Query: 317 N-----YLRFNLYDLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRK 472 + ++R + +L + + S + R L M+ + SI+ +++ID T + Sbjct: 212 HHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRT----- 266 Query: 473 DHSLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSGEERIM 601 E G D E + T+ LLN +DG ST + IM Sbjct: 267 ----EGGKGGGD----SEVQRTMLELLNQLDGFESTQNIKIIM 301
>FTSH_HELPY (P71408) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 632 Score = 50.1 bits (118), Expect = 5e-06 Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 10/181 (5%) Frame = +2 Query: 98 YGYGSWQG-INHHHP-ASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLY 271 +G GS + IN P F +A + K+ V++ +D FLK E Y +G +G LL Sbjct: 151 FGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLV 209 Query: 272 GPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNK---SILVIE 427 GPPGTGK+ L A+A + + SS V +S R L + + K SI+ I+ Sbjct: 210 GPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFID 269 Query: 428 DIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSGEERIMIF 607 +ID K + G D ER+ TL+ LL +DG S + ++ Sbjct: 270 EIDAI--------GKSRAAGGVVSGND-----EREQTLNQLLAEMDGFGSENAPVIVLAA 316 Query: 608 T 610 T Sbjct: 317 T 317
>FTSH_HELPJ (Q9ZM66) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 632 Score = 50.1 bits (118), Expect = 5e-06 Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 10/181 (5%) Frame = +2 Query: 98 YGYGSWQG-INHHHP-ASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLY 271 +G GS + IN P F +A + K+ V++ +D FLK E Y +G +G LL Sbjct: 151 FGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLV 209 Query: 272 GPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNK---SILVIE 427 GPPGTGK+ L A+A + + SS V +S R L + + K SI+ I+ Sbjct: 210 GPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFID 269 Query: 428 DIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSGEERIMIF 607 +ID K + G D ER+ TL+ LL +DG S + ++ Sbjct: 270 EIDAI--------GKSRAAGGMISGND-----EREQTLNQLLAEMDGFGSENAPVIVLAA 316 Query: 608 T 610 T Sbjct: 317 T 317
>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4| Length = 443 Score = 49.7 bits (117), Expect = 7e-06 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L EYY+ +G +G +LYG PGTGK+ L A+AN +LR + Sbjct: 198 QEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSE 257 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D + R L ++ + SI+ I++ID D Sbjct: 258 LIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAV----------------GTKRYDSN 301 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +GGER+I T+ LLN +DG + + G+ ++++ T Sbjct: 302 SGGEREIQRTMLELLNQLDG-FDSRGDVKVLMAT 334
>PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-binding protein| homolog 10) (Fragment) Length = 389 Score = 49.7 bits (117), Expect = 7e-06 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 10/141 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E ++ +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + S Sbjct: 151 IKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGS 210 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L M+ + SI+ +++ID G GG+ ++ T Sbjct: 211 RMVRELFIMAREHAPSIIFMDEIDSI---------------GSSRGESGSGGGDSEVQRT 255 Query: 539 LSGLLNFIDGLWSTSGEERIM 601 + LLN +DG ST + +M Sbjct: 256 MLELLNQLDGFESTKNIKVLM 276
>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)| (TAT-binding homolog 2) Length = 428 Score = 49.7 bits (117), Expect = 7e-06 Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 12/111 (10%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLY 340 KQ + + ++ L + + Y++IG RG LLYGPPGTGK+ LV A+AN ++R N Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 Query: 341 DLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRK 472 + + + + R + ++ + SI+ I+++D FD + DR+ Sbjct: 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDRE 291
>PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)| Length = 461 Score = 48.9 bits (115), Expect = 1e-05 Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 10/141 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E+++ +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + + Sbjct: 164 VKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGA 223 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L M+ + SI+ +++ID S+ +G +GG+ ++ T Sbjct: 224 RMVRELFVMAREHAPSIIFMDEID--------------SIGSRLEG---GSGGDSEVQRT 266 Query: 539 LSGLLNFIDGLWSTSGEERIM 601 + LLN +DG +T + IM Sbjct: 267 MLELLNQLDGFEATKNIKVIM 287
>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding| protein homolog 2) Length = 448 Score = 48.5 bits (114), Expect = 2e-05 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L E Y+ IG +G +LYG PGTGK+ L A+AN +LR + Sbjct: 203 QEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 262 Query: 344 LDLSSVHDNSSLQRLLI---DMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D L R L D + SI+ I++ID D Sbjct: 263 LIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAV----------------GTKRYDAH 306 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +GGER+I T+ LLN +DG + + G+ ++++ T Sbjct: 307 SGGEREIQRTMLELLNQLDG-FDSRGDVKVILAT 339
>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog| Length = 387 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 12/111 (10%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLY 340 KQ + + ++ L + + Y++IG +G LLYGPPGTGK+ LV A+AN ++R N Sbjct: 143 KQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGS 202 Query: 341 DLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRK 472 + + + + R + ++ + SI+ I+++D FD + DR+ Sbjct: 203 EFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADRE 253
>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase domain protein 44) (CADp44) Length = 389 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDN--SSLQ 382 L E +QR+G +G LLYGPPGTGK+ L A+A+ L N + SS+ D Sbjct: 153 LTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESA 212 Query: 383 RLLIDMSNKS------ILVIEDID 436 RL+ +M N + I+ +++ID Sbjct: 213 RLIREMFNYARDHQPCIIFMDEID 236
>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) Length = 389 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDN--SSLQ 382 L E +QR+G +G LLYGPPGTGK+ L A+A+ L N + SS+ D Sbjct: 153 LTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESA 212 Query: 383 RLLIDMSNKS------ILVIEDID 436 RL+ +M N + I+ +++ID Sbjct: 213 RLIREMFNYARDHQPCIIFMDEID 236
>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) Length = 389 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDN--SSLQ 382 L E +QR+G +G LLYGPPGTGK+ L A+A+ L N + SS+ D Sbjct: 153 LTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESA 212 Query: 383 RLLIDMSNKS------ILVIEDID 436 RL+ +M N + I+ +++ID Sbjct: 213 RLIREMFNYARDHQPCIIFMDEID 236
>PRS8_YEAST (Q01939) 26S protease regulatory subunit 8 homolog (SUG1 protein)| (CIM3 protein) (TAT-binding protein TBY1) Length = 405 Score = 47.0 bits (110), Expect = 4e-05 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 10/144 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E ++ +G A +G +LYGPPGTGK+ L A+A+ ++R + +L + + S Sbjct: 168 VKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGS 227 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L M+ + SI+ +++ID T E G GG+ ++ T Sbjct: 228 RMVRELFVMAREHAPSIIFMDEIDSIGST-----------RVEGSG-----GGDSEVQRT 271 Query: 539 LSGLLNFIDGLWSTSGEERIMIFT 610 + LLN +DG + TS +I++ T Sbjct: 272 MLELLNQLDG-FETSKNIKIIMAT 294
>PRS8_DROME (O18413) 26S protease regulatory subunit 8| Length = 405 Score = 47.0 bits (110), Expect = 4e-05 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 8/139 (5%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E + +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + S Sbjct: 168 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGS 227 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLS 544 + R L M+ + SI+ +++ID S + G D E + T+ Sbjct: 228 RMVRELFVMAREHAPSIIFMDEIDSI----------GSSRIESGSGGD----SEVQRTML 273 Query: 545 GLLNFIDGLWSTSGEERIM 601 LLN +DG +T + IM Sbjct: 274 ELLNQLDGFEATKNIKVIM 292
>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)| Length = 403 Score = 47.0 bits (110), Expect = 4e-05 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E ++ +G +G LLYGPPGTGK+ L A+A+ ++R + +L + + S Sbjct: 165 VKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGS 224 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLS 544 + R L M+ + SI+ +++ID SR D S + E + T+ Sbjct: 225 RMVRELFVMAREHAPSIIFMDEIDSI--GSSRSDSSGGSGD-----------SEVQRTML 271 Query: 545 GLLNFIDGLWSTSGEERIM 601 LLN +DG +T + IM Sbjct: 272 ELLNQLDGFEATKNIKVIM 290
>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog| Length = 389 Score = 47.0 bits (110), Expect = 4e-05 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 12/111 (10%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLY 340 KQ V + ++ L + + Y++IG RG LLYGPPGTGK+ LV A+ AN++R Sbjct: 143 KQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGS 202 Query: 341 DLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRK 472 + + + + R + M+ + +I+ I++ID FD + DR+ Sbjct: 203 EFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADRE 253
>RFCL_AERPE (Q9YBS5) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 479 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 14/79 (17%) Frame = +2 Query: 242 KAW-------KRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDM 400 KAW KR LLYGPPG GK+SLV A+A+ + +L+ S S ++R++ Sbjct: 39 KAWLEGRKPDKRAALLYGPPGVGKTSLVEAIASEFNLEMIELNASDYRRRSDIERIVGAA 98 Query: 401 SNKS-------ILVIEDID 436 S K +++++++D Sbjct: 99 SRKRSMFKRGVVILLDEVD 117
>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding| homolog 5) Length = 437 Score = 47.0 bits (110), Expect = 4e-05 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L E Y+ +G +G +LYG PGTGK+ L A+AN +LR + Sbjct: 192 QEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D L R + ++ + SI+ I++ID D Sbjct: 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAI----------------GTKRYDSN 295 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +GGER+I T+ LLN +DG + G+ ++++ T Sbjct: 296 SGGEREIQRTMLELLNQLDG-FDDRGDVKVIMAT 328
>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 430 Score = 47.0 bits (110), Expect = 4e-05 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 10/151 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYD 343 Q + + ++ LK E ++++G +G LLYGPPGTGK+ L A+ A ++R + Sbjct: 180 QEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 239 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + + +SL + + ++ + SI+ I++ID + D Sbjct: 240 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT----------------DAL 283 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIM 601 TGG+R++ TL LL +DG + G+ +I+ Sbjct: 284 TGGDREVQRTLMQLLAEMDG-FDARGDVKII 313
>PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 protein)| Length = 402 Score = 47.0 bits (110), Expect = 4e-05 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 8/139 (5%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E + +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + S Sbjct: 165 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGS 224 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLS 544 + R L M+ + SI+ +++ID S + G D E + T+ Sbjct: 225 RMVRELFVMAREHAPSIIFMDEIDSI----------GSSRIESGSGGD----SEVQRTML 270 Query: 545 GLLNFIDGLWSTSGEERIM 601 LLN +DG +T + IM Sbjct: 271 ELLNQLDGFEATKNIKVIM 289
>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome| AAA-ATPase subunit RPT3) (Regulatory particle triple-A ATPase subunit 3) Length = 408 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/49 (46%), Positives = 32/49 (65%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 KQ + + ++ L E Y++IG RG LLYGPPGTGK+ L A+AN+ Sbjct: 164 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212
>PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1) Length = 406 Score = 46.6 bits (109), Expect = 6e-05 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E ++ +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + + Sbjct: 169 VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGA 228 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L M+ + SI+ +++ID S + E +GG+ ++ T Sbjct: 229 RMVRELFVMAREHAPSIIFMDEID-SIGSSRLEG---------------GSGGDSEVQRT 272 Query: 539 LSGLLNFIDGLWSTSGEERIM 601 + LLN +DG +T + IM Sbjct: 273 MLELLNQLDGFEATKNIKVIM 293
>PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding protein homolog 10) (TBP10) Length = 406 Score = 46.6 bits (109), Expect = 6e-05 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E ++ +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + + Sbjct: 169 VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGA 228 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L M+ + SI+ +++ID S + E +GG+ ++ T Sbjct: 229 RMVRELFVMAREHAPSIIFMDEID-SIGSSRLEG---------------GSGGDSEVQRT 272 Query: 539 LSGLLNFIDGLWSTSGEERIM 601 + LLN +DG +T + IM Sbjct: 273 MLELLNQLDGFEATKNIKVIM 293
>PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1) Length = 406 Score = 46.6 bits (109), Expect = 6e-05 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E ++ +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + + Sbjct: 169 VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGA 228 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L M+ + SI+ +++ID S + E +GG+ ++ T Sbjct: 229 RMVRELFVMAREHAPSIIFMDEID-SIGSSRLEG---------------GSGGDSEVQRT 272 Query: 539 LSGLLNFIDGLWSTSGEERIM 601 + LLN +DG +T + IM Sbjct: 273 MLELLNQLDGFEATKNIKVIM 293
>PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1) Length = 406 Score = 46.6 bits (109), Expect = 6e-05 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E ++ +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + + Sbjct: 169 VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGA 228 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L M+ + SI+ +++ID S + E +GG+ ++ T Sbjct: 229 RMVRELFVMAREHAPSIIFMDEID-SIGSSRLEG---------------GSGGDSEVQRT 272 Query: 539 LSGLLNFIDGLWSTSGEERIM 601 + LLN +DG +T + IM Sbjct: 273 MLELLNQLDGFEATKNIKVIM 293
>PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) Length = 406 Score = 46.6 bits (109), Expect = 6e-05 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 +K E ++ +G A +G LLYGPPGTGK+ L A+A+ ++R + +L + + + Sbjct: 169 VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGA 228 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L M+ + SI+ +++ID S + E +GG+ ++ T Sbjct: 229 RMVRELFVMAREHAPSIIFMDEID-SIGSSRLEG---------------GSGGDSEVQRT 272 Query: 539 LSGLLNFIDGLWSTSGEERIM 601 + LLN +DG +T + IM Sbjct: 273 MLELLNQLDGFEATKNIKVIM 293
>CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B (AtCDC48b)| Length = 603 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/43 (53%), Positives = 27/43 (62%) Frame = +2 Query: 236 IGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVH 364 +G W RG LLYGPPGTGK+SLV A+ +L L SVH Sbjct: 51 LGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVH 93 Score = 38.9 bits (89), Expect = 0.012 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 8/146 (5%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDL 352 LK+ + ++ +K + ++G + RG LL+GPPG K++L A AN + + + L Sbjct: 294 LKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSC 353 Query: 353 SS-----VHDNSSLQRLLID---MSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRD 508 + V + +L R +++ SI+ ++ D E + S Sbjct: 354 AELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSS--------- 404 Query: 509 YRTGGERKITLSGLLNFIDGLWSTSG 586 T GER LS LL +DGL G Sbjct: 405 --TVGER--LLSTLLTEMDGLEEAKG 426
>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 407 Score = 46.6 bits (109), Expect = 6e-05 Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 10/144 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 LK E ++++G +G LLYGPPGTGK+ L A+ A+++R +L + + + Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227 Query: 374 SLQRLLIDMSNKS---ILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 L R + ++ + I+ I++ID + ++ SL TGG+R++ T Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID------AVASKRTESL----------TGGDREVQRT 271 Query: 539 LSGLLNFIDGLWSTSGEERIMIFT 610 L LL +DG + + G+ +I+ T Sbjct: 272 LMQLLAEMDG-FDSRGDVKIIAAT 294
>SAV_SULAC (Q07590) SAV protein| Length = 780 Score = 46.2 bits (108), Expect = 8e-05 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 8/151 (5%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDL 346 KQ + + ++ ++ E +QR+G +G LLYGPPGTGK+ L A+AN + + Sbjct: 221 KQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKTLLARALANEIGAYFITVNGP 280 Query: 347 DLSSVHDNSSLQRLL-----IDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDY 511 ++ S S QR+ + + SI+ I++ID RED Sbjct: 281 EIMSKFYGESEQRIREIFKEAEENAPSIIFIDEIDAI--APKRED--------------- 323 Query: 512 RTGGERKITLSGLLNFIDGLWSTSGEERIMI 604 TG K ++ LL +DG+ G R+++ Sbjct: 324 VTGEVEKRVVAQLLTLMDGI---KGRGRVIV 351 Score = 37.0 bits (84), Expect = 0.046 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 +KQ + + ++ L+ E + + G +G LL+GPPGTGK+ L A+A Sbjct: 495 VKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAVA 542
>Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156| Length = 903 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/49 (44%), Positives = 34/49 (69%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN 319 +KQ + + ++ LK KE +++IG +G LL+GPPGTGK+ L A+AN Sbjct: 460 VKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVAN 508 Score = 42.7 bits (99), Expect = 8e-04 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 11/145 (7%) Frame = +2 Query: 170 GLKQAVL---DDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLY 340 GLK+ V + ++ ++ E ++++G +G LL GPPGTGK+ L A+AN N Y Sbjct: 183 GLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFY 242 Query: 341 DLDLSSV------HDNSSLQRLLIDMSNK--SILVIEDIDCSFDTMSREDRKDHSLEDED 496 ++ + +L+++ + SI+ I++ID Sbjct: 243 VINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPK--------------- 287 Query: 497 DGRDYRTGGERKITLSGLLNFIDGL 571 RD TG + ++ LL +DGL Sbjct: 288 --RDEATGEVERRLVAQLLTLMDGL 310
>Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297| Length = 733 Score = 46.2 bits (108), Expect = 8e-05 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL---DLSSVHDNSSL 379 LK E +QR+G +G LLYGPPGTGK+ + A+AN + + + ++ S + S Sbjct: 202 LKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESE 261 Query: 380 QRL--LIDMSNK---SILVIEDID 436 QRL + + + + SI+ I++ID Sbjct: 262 QRLREIFEEAKENAPSIIFIDEID 285 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/48 (41%), Positives = 30/48 (62%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN 319 KQ +++ ++ LK E ++ RG LL+GPPGTGK+ L A+AN Sbjct: 464 KQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVAN 511
>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)| Length = 448 Score = 45.8 bits (107), Expect = 1e-04 Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ L E Y+ +G +G +LYG PGTGK+ L A+AN +LR + Sbjct: 201 QEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSE 260 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + D L R L + + + SI+ I++ID D + Sbjct: 261 LIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAI----------------GTKRYDAQ 304 Query: 515 TGGERKI--TLSGLLNFIDGLWSTSGEERIMIFT 610 +G ER+I T+ LLN +DG ++ + ++++ T Sbjct: 305 SGAEREIQRTMLELLNQLDGFDTSQRDIKVIMAT 338
>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 393 Score = 45.4 bits (106), Expect = 1e-04 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 LK E ++ IG +G LLYGPPGTGK+ L A+A ++ + V + + Sbjct: 154 LKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGA 213 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L +M+ + SI+ I++ID D T GER+I T Sbjct: 214 RIVRELFEMAKRKAPSIIFIDEIDAIGAKRI----------------DIGTSGEREIQRT 257 Query: 539 LSGLLNFIDG 568 L LL +DG Sbjct: 258 LMQLLAELDG 267
>FTSH_MYCPN (P75120) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 709 Score = 45.4 bits (106), Expect = 1e-04 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Frame = +2 Query: 92 NDYGYGSWQGINHHHPASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLY 271 N + G Q F+ +A K +L+ +D +LK Y ++G RG +LY Sbjct: 209 NIFSIGKTQAKLAKSSVRFDNIAGLQEEKHELLEIVD-YLKNPLKYAQMGARSPRGVILY 267 Query: 272 GPPGTGKSSLVAAMANYLRFNLYDLDLSSVHD-----NSSLQRLLIDMSNKS---ILVIE 427 GPPGTGK+ L A+A + S D + R L + + K+ I+ I+ Sbjct: 268 GPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFID 327 Query: 428 DIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSG 586 +ID R + +S+ ++ TL+ LL +DG S +G Sbjct: 328 EIDSVGSKRGRVELSSYSVVEQ--------------TLNQLLAEMDGFTSRTG 366
>FTSH_MYCLE (Q9CD58) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 787 Score = 45.4 bits (106), Expect = 1e-04 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 15/178 (8%) Frame = +2 Query: 98 YGYGSWQGINHHHPASFETLAMDPGLKQAV--LDDLDRFLKRKEYYQRIGKAWKRGYLLY 271 +G+G + T A G+ +AV L ++ FL+ YQ +G +G LLY Sbjct: 143 FGFGKSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPCRYQTLGAKIPKGVLLY 202 Query: 272 GPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNKS---ILVIE 427 GPPGTGK+ L A+A + + S V +S R L D + ++ I+ ++ Sbjct: 203 GPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQNSPCIIFVD 262 Query: 428 DIDCSFDTMSREDRKDHSLEDEDDGRDYRTG-----GERKITLSGLLNFIDGLWSTSG 586 +ID GR TG ER+ TL+ LL +DG +G Sbjct: 263 EIDAV-------------------GRQRGTGLGGGHDEREQTLNQLLVEMDGFGDRAG 301
>VAT_THEAC (O05209) VCP-like ATPase| Length = 745 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL---DLSSVHDNSSL 379 LK E ++R+G +G +LYGPPGTGK+ + A+AN N + ++ S + S Sbjct: 210 LKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSE 269 Query: 380 QRL-----LIDMSNKSILVIEDID 436 Q+L + + SI+ I++ID Sbjct: 270 QKLREIFSKAEETAPSIIFIDEID 293 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/58 (31%), Positives = 34/58 (58%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K+ + + ++ L + + ++R+G +G+LLYGPPG GK+ L A+A N + Sbjct: 475 VKREIKETVELPLLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNANFISI 532
>FTSH_MYCTU (P0A4V8) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 760 Score = 45.1 bits (105), Expect = 2e-04 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 10/173 (5%) Frame = +2 Query: 98 YGYGSWQGINHHHPASFETLAMDPGLKQAV--LDDLDRFLKRKEYYQRIGKAWKRGYLLY 271 +G+G + T A G+ +AV L ++ FL+ YQ +G +G LLY Sbjct: 143 FGFGKSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALGAKIPKGVLLY 202 Query: 272 GPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNKSILVIEDID 436 GPPGTGK+ L A+A + + S V +S R L + + ++ I +D Sbjct: 203 GPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVD 262 Query: 437 CSFDTMSREDRKDHSLEDEDDGRDYRTGG---ERKITLSGLLNFIDGLWSTSG 586 D + R+ R GG ER+ TL+ LL +DG +G Sbjct: 263 -EIDAVGRQ-------------RGAGLGGGHDEREQTLNQLLVEMDGFGDRAG 301
>FTSH_MYCBO (P0A4V9) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 760 Score = 45.1 bits (105), Expect = 2e-04 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 10/173 (5%) Frame = +2 Query: 98 YGYGSWQGINHHHPASFETLAMDPGLKQAV--LDDLDRFLKRKEYYQRIGKAWKRGYLLY 271 +G+G + T A G+ +AV L ++ FL+ YQ +G +G LLY Sbjct: 143 FGFGKSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALGAKIPKGVLLY 202 Query: 272 GPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNKSILVIEDID 436 GPPGTGK+ L A+A + + S V +S R L + + ++ I +D Sbjct: 203 GPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVD 262 Query: 437 CSFDTMSREDRKDHSLEDEDDGRDYRTGG---ERKITLSGLLNFIDGLWSTSG 586 D + R+ R GG ER+ TL+ LL +DG +G Sbjct: 263 -EIDAVGRQ-------------RGAGLGGGHDEREQTLNQLLVEMDGFGDRAG 301
>RFCL_PICTO (Q6L0P4) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 410 Score = 45.1 bits (105), Expect = 2e-04 Identities = 35/124 (28%), Positives = 61/124 (49%) Frame = +2 Query: 191 DDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDN 370 D+L+ ++ + + R + K+ +LYG PGTGK++ +ANYL L +++ S + Sbjct: 20 DELNSIIRWADSW-RNNEVIKKSLILYGDPGTGKTTTATVIANYLNVPLIEMNASDERNA 78 Query: 371 SSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGL 550 S++R+ + S S L+ E D + D D+ E D R GG ++ L Sbjct: 79 DSMKRVALMSSLYSDLLSE--RRIPDRLILIDEADNIFESRDPKRGGDYGG-----ITEL 131 Query: 551 LNFI 562 LN + Sbjct: 132 LNVV 135
>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog| Length = 413 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/49 (44%), Positives = 32/49 (65%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 KQ + + ++ L E Y++IG RG LLYGPPGTGK+ L A+A++ Sbjct: 169 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 217
>KTNA1_MOUSE (Q9WV86) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) (Lipotransin) Length = 491 Score = 44.7 bits (104), Expect = 2e-04 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 10/101 (9%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSVH--DNSSLQR 385 E+++ I + WK G L+ GPPGTGK+ L A+A + FN+ L+S + ++ L R Sbjct: 233 EFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVR 291 Query: 386 LLIDMS---NKSILVIEDID--CSFDTMSREDRKDHSLEDE 493 LL +M+ + + + I++ID CS S E ++ E Sbjct: 292 LLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAE 332
>FTSH_MYCGE (P47695) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 702 Score = 44.7 bits (104), Expect = 2e-04 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 8/173 (4%) Frame = +2 Query: 92 NDYGYGSWQGINHHHPASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLY 271 N + G Q F +A K +L+ +D +LK Y ++G RG +LY Sbjct: 212 NIFSIGKTQAKLAKSTVKFTNIAGLQEEKHELLEIVD-YLKNPLKYAQMGARSPRGVILY 270 Query: 272 GPPGTGKSSLVAAMANYLRFNLYDLDLSSVHD-----NSSLQRLLIDMSNKS---ILVIE 427 GPPGTGK+ L A+A + S D + R L + + K+ I+ I+ Sbjct: 271 GPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFID 330 Query: 428 DIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSG 586 +ID R + +S+ ++ TL+ LL +DG S +G Sbjct: 331 EIDSVGSKRGRVELSSYSVVEQ--------------TLNQLLAEMDGFTSRTG 369
>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 410 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 LK+ E +++IG +G LLYGPPGTGK+ L A+A+ +++ + + + + Sbjct: 171 LKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGA 230 Query: 374 SLQRLLIDMSNK---SILVIEDID 436 L R + +++ + SI+ I++ID Sbjct: 231 RLVRGVFELAKEKSPSIIFIDEID 254
>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 397 Score = 44.7 bits (104), Expect = 2e-04 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 10/140 (7%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYD 343 Q + + ++ LK E ++++G +G LLYGPPG GK+ + A+AN ++R + Sbjct: 148 QELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSE 207 Query: 344 LDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYR 514 L + + + L L +++ + +I+ I++ID R D + Sbjct: 208 LVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDA-----IGAKRMDET----------- 251 Query: 515 TGGERKI--TLSGLLNFIDG 568 TGGER++ TL LL +DG Sbjct: 252 TGGEREVNRTLMQLLAEMDG 271
>FTSH2_SYNY3 (P73179) Cell division protein ftsH homolog 2 (EC 3.4.24.-)| Length = 665 Score = 44.3 bits (103), Expect = 3e-04 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 6/139 (4%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK+ E + IG RG LL GPPGTGK+ L A+A + + S Sbjct: 223 LQEVVTFLKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 282 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG-ER 529 V +S R L + ++ + ID D + R+ G Y G ER Sbjct: 283 MFVGVGASRVRDLFKKAKENAPCLVFID-EIDAVGRQ-----------RGVGYGGGNDER 330 Query: 530 KITLSGLLNFIDGLWSTSG 586 + TL+ LL +DG SG Sbjct: 331 EQTLNQLLTEMDGFEGNSG 349
>KTNA1_RAT (Q6E0V2) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 44.3 bits (103), Expect = 3e-04 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 10/101 (9%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSVH--DNSSLQR 385 E+++ I + WK G L+ GPPGTGK+ L A+A + FN+ L+S + ++ L R Sbjct: 233 EFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVR 291 Query: 386 LLIDMS---NKSILVIEDID--CSFDTMSREDRKDHSLEDE 493 LL +M+ + + + I++ID CS S E ++ E Sbjct: 292 LLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAE 332
>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 44.3 bits (103), Expect = 3e-04 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 10/101 (9%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSVH--DNSSLQR 385 E+++ I + WK G L+ GPPGTGK+ L A+A + FN+ L+S + ++ L R Sbjct: 233 EFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVR 291 Query: 386 LLIDMS---NKSILVIEDID--CSFDTMSREDRKDHSLEDE 493 LL +M+ + + + I++ID CS S E ++ E Sbjct: 292 LLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAE 332
>KTNA1_XENLA (Q9PUL2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Fragment) Length = 486 Score = 44.3 bits (103), Expect = 3e-04 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 10/101 (9%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSVH--DNSSLQR 385 E+++ I + WK G L+ GPPGTGK+ L A+A + FN+ L+S + ++ L R Sbjct: 230 EFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVR 288 Query: 386 LLIDMSN---KSILVIEDID--CSFDTMSREDRKDHSLEDE 493 LL +M+ + + I++ID CS S E ++ E Sbjct: 289 LLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAE 329
>AFG3_YEAST (P39925) Mitochondrial respiratory chain complexes assembly protein| AFG3 (EC 3.4.24.-) (TAT-binding homolog 10) Length = 761 Score = 43.9 bits (102), Expect = 4e-04 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 8/164 (4%) Frame = +2 Query: 143 SFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 SF+ +A KQ +++ + FLK Y ++G RG +L GPPGTGK+ L A A Sbjct: 286 SFKNVAGCDEAKQEIMEFV-HFLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAGE 344 Query: 323 LRFNLYDLDLSS-----VHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDH 478 + S V +S R L + SI+ I++I D + +E K Sbjct: 345 ANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEI----DAIGKERGKGG 400 Query: 479 SLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSGEERIMIFT 610 +L +D ER+ TL+ LL +DG ++TS + ++ T Sbjct: 401 ALGGAND--------EREATLNQLLVEMDG-FTTSDQVVVLAGT 435
>SAP1_YEAST (P39955) Protein SAP1| Length = 897 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Frame = +2 Query: 254 RGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNK--- 409 RG LL+GPPGTGK+ L A+A + + SS + ++ L R L ++ K Sbjct: 639 RGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSP 698 Query: 410 SILVIEDIDCSFDTMSREDRKDHS 481 SI+ +++ID + + E+ + S Sbjct: 699 SIIFVDEIDSIMGSRNNENENESS 722
>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome| regulatory particle ATPase-like protein 4) Length = 406 Score = 43.9 bits (102), Expect = 4e-04 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 9/139 (6%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDN--SSLQRLLI 394 E ++R+G +G LL+GPPGTGK+ L A+A+ L N + S++ D R++ Sbjct: 174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIR 233 Query: 395 DMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDD---GRDYR--TGGERKI--TLSGLL 553 +M N +R+ + DE D GR + T +R+I TL LL Sbjct: 234 EMFN---------------YARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELL 278 Query: 554 NFIDGLWSTSGEERIMIFT 610 N +DG + + G+ ++++ T Sbjct: 279 NQLDG-FDSLGKVKVIMAT 296
>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)| (Proteasomal cap subunit) Length = 437 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/53 (43%), Positives = 30/53 (56%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHD 367 LK E +QR+G +G LLYGPPGTGK+ L A+A + N S + D Sbjct: 201 LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253
>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 420 Score = 43.9 bits (102), Expect = 4e-04 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L E + RIG +G LLYG PGTGK+ L A+A+ ++R +L + D S Sbjct: 179 LTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGS 238 Query: 374 SLQRLLIDMSNK---SILVIEDID 436 L R + +M+ K SI+ I+++D Sbjct: 239 KLVREIFEMARKKAPSIIFIDELD 262
>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) Length = 516 Score = 43.9 bits (102), Expect = 4e-04 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 8/80 (10%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSVH--DNSSLQR 385 +Y++ I + WK G L+ GPPGTGK+ L A+A FN+ L+S + ++ L R Sbjct: 258 DYFKGIRRPWK-GVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVR 316 Query: 386 LLIDMSN---KSILVIEDID 436 LL +M+ S + I++ID Sbjct: 317 LLFEMARFYAPSTIFIDEID 336
>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4| Length = 388 Score = 43.9 bits (102), Expect = 4e-04 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 16/128 (12%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDN--SSLQ 382 LK E + R+G +G LLYGPPGTGK+ L A+A L N + S++ D Sbjct: 152 LKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESA 211 Query: 383 RLLIDM------SNKSILVIEDIDC----SFDTMSREDRKDH----SLEDEDDGRDYRTG 520 R++ +M ++ +++ID F + DR+ L ++ DG DY Sbjct: 212 RIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYL-- 269 Query: 521 GERKITLS 544 G+ KI ++ Sbjct: 270 GQTKIIMA 277
>VPS4_SCHPO (Q09803) Suppressor protein of bem1/bed5 double mutants| Length = 432 Score = 43.5 bits (101), Expect = 5e-04 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 8/95 (8%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSL---VAAMANYLRFNLYDL 346 K+A+ + + +K + + K W G LLYGPPGTGKS L VA A F++ Sbjct: 138 KEALKETVLLPIKLPQLFSHGRKPWS-GILLYGPPGTGKSYLAKAVATEAGSTFFSISSS 196 Query: 347 DLSS--VHDNSSLQRLLIDMSNK---SILVIEDID 436 DL S + ++ L R L +M+ + SI+ I++ID Sbjct: 197 DLVSKWMGESERLVRQLFEMAREQKPSIIFIDEID 231
>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 421 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 8/80 (10%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNSSLQR 385 E + RIG +G LLYG PGTGK+ L A+A+ ++R +L + D S L R Sbjct: 183 ERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVR 242 Query: 386 LLIDMSNK---SILVIEDID 436 + +M+ K SI+ I+++D Sbjct: 243 EIFEMARKKAPSIIFIDELD 262
>RIX7_YEAST (Q07844) Ribosome biogenesis ATPase RIX7| Length = 837 Score = 43.5 bits (101), Expect = 5e-04 Identities = 20/46 (43%), Positives = 29/46 (63%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +KR E Y+++G + G LL+GPPG GK+ L A+AN R N + Sbjct: 553 IKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISI 598 Score = 35.0 bits (79), Expect = 0.17 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSV 361 E + G RG LL+GPPG GK+S+ A+A L+ + SV Sbjct: 229 EIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSV 275
>RFCL_NANEQ (P60373) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 430 Score = 43.5 bits (101), Expect = 5e-04 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 8/92 (8%) Frame = +2 Query: 218 KEYYQRIGKAWK-RGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLI 394 ++Y K +K + LLYGPPGTGK+S V A+AN L + + +++ S D + ++ Sbjct: 56 RDYVINYKKKYKGKALLLYGPPGTGKTSSVYALANELGYEVLEVNASDERDAIHIHHIVG 115 Query: 395 DMSNKS-------ILVIEDIDCSFDTMSREDR 469 + S I++++++D +EDR Sbjct: 116 EASKGKPLFHKGRIILVDEVD---GLSGKEDR 144
>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1) Length = 523 Score = 43.1 bits (100), Expect = 6e-04 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 8/80 (10%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSV--HDNSSLQR 385 EY+Q I + WK G L++GPPGTGK+ L A+A FN+ L+S ++ + R Sbjct: 263 EYFQGIRRPWK-GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVR 321 Query: 386 LLIDMSN---KSILVIEDID 436 L D++ S + I++ID Sbjct: 322 CLFDLARAYAPSTIFIDEID 341
>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B| Length = 414 Score = 43.1 bits (100), Expect = 6e-04 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLY 340 KQ V + ++ L E YQ+IG RG L+YGPPG GK+ L A+ A+++R Sbjct: 170 KQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGS 229 Query: 341 DLDLSSVHDNSSLQR---LLIDMSNKSILVIEDIDC----SFDTMSREDRKDH----SLE 487 + + + + R L ++ SI+ I++ID FD + DR+ L Sbjct: 230 EFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELL 289 Query: 488 DEDDGRDYRT 517 ++ DG D T Sbjct: 290 NQMDGFDQST 299
>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 392 Score = 42.7 bits (99), Expect = 8e-04 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 10/130 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 LK E ++ IG +G LLYGPPGTGK+ L A+ A +++ + V + + Sbjct: 154 LKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGA 213 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R + +++ + SI+ I++ID D T GER+I T Sbjct: 214 RIVREVFELARRKAPSIVFIDEIDAIGAKRV----------------DMGTSGEREIQRT 257 Query: 539 LSGLLNFIDG 568 L LL IDG Sbjct: 258 LMQLLAEIDG 267
>PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog (TAT-binding| protein homolog 1) (TBP-1) Length = 419 Score = 42.7 bits (99), Expect = 8e-04 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 12/144 (8%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 + KE ++++G +G LLYGPPGTGK+ + A A +L+ L + D + Sbjct: 186 MTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 245 Query: 374 SLQR---LLIDMSNKSILVIEDIDC----SFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 L R LL + I+ I++ID FD+ DR E + Sbjct: 246 KLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR------------------EVQ 287 Query: 533 ITLSGLLNFIDGLWSTSGEERIMI 604 T+ LLN +DG S ++RI + Sbjct: 288 RTMLELLNQLDGF---SSDDRIKV 308
>PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1135 Score = 42.7 bits (99), Expect = 8e-04 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K +LD ++ LK E + + G + G L YGPPGTGK+ L A+A N + + Sbjct: 821 VKDEILDTIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSV 877
>FTSH_TREPA (O83746) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 609 Score = 42.7 bits (99), Expect = 8e-04 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 15/130 (11%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLY 340 K+ +++ +D FLK + Y IG RG LL GPPGTGK+ L A+A + R + Sbjct: 150 KEELMEVVD-FLKFPKKYTEIGGKIPRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGS 208 Query: 341 DLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRKDHSLED--- 490 D V +S R L + + I+ I+++D + + D ++ +L Sbjct: 209 DFIEMFVGIGASRVRDLFKQAREKAPGIIFIDELDAIGKSRLNAIHSNDEREQTLNQLLV 268 Query: 491 EDDGRDYRTG 520 E DG D TG Sbjct: 269 EMDGFDNTTG 278
>SPAST_MOUSE (Q9QYY8) Spastin| Length = 614 Score = 42.7 bits (99), Expect = 8e-04 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Frame = +2 Query: 146 FETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSL---VAAMA 316 F+ +A KQA+ + + R E + + +A RG LL+GPPG GK+ L VAA + Sbjct: 339 FDDIAGQELAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAES 397 Query: 317 NYLRFNLYDLDLSS--VHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHS 481 N FN+ L+S V + L R L ++ + SI+ I+++D S RE D S Sbjct: 398 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVD-SLLCERREGEHDAS 456 Query: 482 LEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSGEERIMI 604 R++ L+ F DG+ S +G++R+++ Sbjct: 457 ---------------RRLKTEFLIEF-DGVQS-AGDDRVLV 480
>SPAST_HUMAN (Q9UBP0) Spastin| Length = 616 Score = 42.7 bits (99), Expect = 8e-04 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Frame = +2 Query: 146 FETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSL---VAAMA 316 F+ +A KQA+ + + R E + + +A RG LL+GPPG GK+ L VAA + Sbjct: 341 FDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAES 399 Query: 317 NYLRFNLYDLDLSS--VHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHS 481 N FN+ L+S V + L R L ++ + SI+ I+++D S RE D S Sbjct: 400 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVD-SLLCERREGEHDAS 458 Query: 482 LEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSGEERIMI 604 R++ L+ F DG+ S +G++R+++ Sbjct: 459 ---------------RRLKTEFLIEF-DGVQS-AGDDRVLV 482
>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 399 Score = 42.7 bits (99), Expect = 8e-04 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 13/146 (8%) Frame = +2 Query: 170 GLK---QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YL 325 GLK Q + + ++ LK E ++ +G +G LLYGPPG GK+ + A+A+ ++ Sbjct: 144 GLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFI 203 Query: 326 RFNLYDLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDED 496 R +L + + + L L +++ + +I+ I++ID R D + Sbjct: 204 RVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDA-----IGAKRMDET----- 253 Query: 497 DGRDYRTGGERKI--TLSGLLNFIDG 568 TGGER++ TL LL +DG Sbjct: 254 ------TGGEREVNRTLMQLLAEMDG 273
>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 399 Score = 42.7 bits (99), Expect = 8e-04 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 13/146 (8%) Frame = +2 Query: 170 GLK---QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YL 325 GLK Q + + ++ LK E ++ +G +G LLYGPPG GK+ + A+A+ ++ Sbjct: 144 GLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFI 203 Query: 326 RFNLYDLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDED 496 R +L + + + L L +++ + +I+ I++ID R D + Sbjct: 204 RVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDA-----IGAKRMDET----- 253 Query: 497 DGRDYRTGGERKI--TLSGLLNFIDG 568 TGGER++ TL LL +DG Sbjct: 254 ------TGGEREVNRTLMQLLAEMDG 273
>FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3.4.24.-)| Length = 616 Score = 42.4 bits (98), Expect = 0.001 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 7/146 (4%) Frame = +2 Query: 170 GLKQAVLD--DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYD 343 G++QA L+ ++ FLK + + +G +G LL GPPGTGK+ L A+A + Sbjct: 165 GIEQAKLELTEVVDFLKNADRFTELGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 224 Query: 344 LDLSS-----VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRD 508 + S V +S R L + + + I ID D + R+ + L +D Sbjct: 225 ISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFID-EIDAVGRQ--RGAGLGGGND--- 278 Query: 509 YRTGGERKITLSGLLNFIDGLWSTSG 586 ER+ TL+ LL +DG +G Sbjct: 279 -----EREQTLNQLLTEMDGFEGNTG 299
>FTSH_BUCAI (P57462) Cell division protein ftsH (EC 3.4.24.-)| Length = 611 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 + +L +LK +Q++G +G L+ GPPGTGK+ L A+A + + + S Sbjct: 164 VSELVEYLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 Query: 359 --VHDNSSLQRLLIDMSNKS---ILVIEDID 436 V +S R + + S KS I+ I++ID Sbjct: 224 MFVGVGASRVRDMFEHSRKSAPCIIFIDEID 254
>PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog (TAT-binding| protein homolog 1) (TBP-1) Length = 424 Score = 42.4 bits (98), Expect = 0.001 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 12/144 (8%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 + KE ++++G +G LLYGPPGTGK+ + A A +L+ L + D + Sbjct: 191 MTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 250 Query: 374 SLQRLLIDMSNKS---ILVIEDIDC----SFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 L R ++ + I+ I++ID FD+ DR E + Sbjct: 251 KLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDR------------------EVQ 292 Query: 533 ITLSGLLNFIDGLWSTSGEERIMI 604 T+ LLN +DG S +ERI + Sbjct: 293 RTMLELLNQLDGF---SSDERIKV 313
>PEX6_DEBHA (Q6BS73) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1198 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K ++D +D LK E + G + G L YGPPGTGK+ L A+A N + + Sbjct: 847 VKDEIMDTIDMPLKHPELFSN-GLKKRSGILFYGPPGTGKTLLAKAIATNFSLNFFSV 903
>RFCL_SULTO (Q975D4) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 440 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%) Frame = +2 Query: 131 HHPASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA 310 + P + + + K+ +++ ++ +LK K Y+ + LLYGPPG GK++L A Sbjct: 9 YRPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAV--------LLYGPPGVGKTTLAEA 60 Query: 311 MANYLRFNLYDL---------DLSSVHDNSSLQRLLIDMSNKSILVIE 427 +A + L+++ D+ ++ + +S+ + + K IL+ E Sbjct: 61 LARDYKLELFEMNASDSRNLNDIRTMAERASITGTIFGIKGKLILLDE 108
>TBP6_YEAST (P40328) Probable 26S protease subunit YTA6 (TAT-binding homolog 6)| Length = 754 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Frame = +2 Query: 254 RGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNK--- 409 RG LL+GPPGTGK+ + A+A + + SS + ++ L R L M+ K Sbjct: 505 RGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSP 564 Query: 410 SILVIEDIDCSFDTMSREDRKDHS 481 SI+ I++ID +R D ++ S Sbjct: 565 SIIFIDEIDSML--TARSDNENES 586
>FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) (Fragment) Length = 662 Score = 42.0 bits (97), Expect = 0.001 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 7/157 (4%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLD--DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA 310 P + T A G QA L+ ++ FLK + Y +G +G LL GPPGTGK+ L A Sbjct: 223 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARA 282 Query: 311 MANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKD 475 +A + S V +S R L + + I ID D + R+ + Sbjct: 283 VAGEAGVPFFSCAASEFVELFVGVGASRVRHLFENAKSKAPCIVFID-EIDAVGRQ--RG 339 Query: 476 HSLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSG 586 L +D ER+ T++ LL +DG SG Sbjct: 340 AGLGGGND--------EREQTINQLLTEMDGFSGNSG 368
>PEX6_PICPA (P33289) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome| biosynthesis protein PAS5) Length = 1165 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K +LD +D +K E + G + G L YGPPGTGK+ L A+A N + + Sbjct: 827 VKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSV 883
>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding| protein homolog 2) Length = 403 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 KQ + + ++ L Y++IG RG LLYGPPGTGK+ L A+A++ Sbjct: 159 KQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 207
>RFCL_PYRAE (Q8ZYK3) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 422 Score = 42.0 bits (97), Expect = 0.001 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%) Frame = +2 Query: 122 INHHHPASFETLAMDPGLKQAVLDDLD-RFLKRKEYYQRIGK------AWKRGYLLYGPP 280 I + P SF + K + + +F KE+ R K A + LL GPP Sbjct: 6 IEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILLAGPP 65 Query: 281 GTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLL 391 G GK++LV A+A +R+ L +L+ S V L++++ Sbjct: 66 GVGKTTLVHALAREIRYELIELNASDVRTADRLRQVI 102
>PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog (TAT-binding| protein homolog 1) (TBP-1) Length = 429 Score = 42.0 bits (97), Expect = 0.001 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 12/144 (8%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 + K+ +Q++G +G LLYGPPGTGK+ + A A +L+ L + D + Sbjct: 196 MTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 255 Query: 374 SLQRLLIDMSNKS---ILVIEDIDC----SFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 L R ++ + I+ I++ID FD+ DR E + Sbjct: 256 KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR------------------EVQ 297 Query: 533 ITLSGLLNFIDGLWSTSGEERIMI 604 T+ LLN +DG S +ERI + Sbjct: 298 RTMLELLNQLDGF---SSDERIKV 318
>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) (DS9) Length = 714 Score = 42.0 bits (97), Expect = 0.001 Identities = 47/160 (29%), Positives = 66/160 (41%), Gaps = 10/160 (6%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLD--DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA 310 P + T A G QA L+ ++ FLK + Y +G +G LL GPPGTGK+ L A Sbjct: 246 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARA 305 Query: 311 MANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKD 475 +A + S V +S R L + + I ID D + R+ Sbjct: 306 VAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFID-EIDAVGRQ---- 360 Query: 476 HSLEDEDDGRDYRTGG---ERKITLSGLLNFIDGLWSTSG 586 R GG ER+ T++ LL +DG SG Sbjct: 361 ---------RGAGMGGGNDEREQTINQLLTEMDGFSGNSG 391
>FTSH_LACLA (P46469) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 695 Score = 42.0 bits (97), Expect = 0.001 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 8/95 (8%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLS 355 KQ +++ +D FLK + Y +G G LL GPPGTGK+ L A+A Y + S Sbjct: 202 KQELVEVVD-FLKNPKKYHDLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGS 260 Query: 356 S-----VHDNSSLQRLLIDMSNK---SILVIEDID 436 V +S R L + + K SI+ I++ID Sbjct: 261 DFVEMFVGVGASRVRDLFENAKKTAPSIIFIDEID 295
>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 396 Score = 42.0 bits (97), Expect = 0.001 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 13/146 (8%) Frame = +2 Query: 170 GLK---QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YL 325 GLK Q + + ++ LK E ++ +G +G LLYGPPG GK+ + A+A+ ++ Sbjct: 141 GLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFI 200 Query: 326 RFNLYDLDLSSVHDNSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDED 496 R +L + + + L L +++ + +I+ I++ID R D + Sbjct: 201 RVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDA-----IGAKRLDET----- 250 Query: 497 DGRDYRTGGERKI--TLSGLLNFIDG 568 TGGER++ TL LL +DG Sbjct: 251 ------TGGEREVNRTLMQLLAEMDG 270
>PEX6_KLULA (Q6CPV1) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1000 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K ++D +D LK E + G + G L YGPPGTGK+ L A+A+ N + + Sbjct: 710 VKGEIMDTIDMPLKHPELFSS-GMKKRSGILFYGPPGTGKTLLAKAIASNFSLNFFSV 766
>FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 644 Score = 41.6 bits (96), Expect = 0.002 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Frame = +2 Query: 191 DDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS---- 358 +++ FLK + Y +G +G LL GPPGTGK+ L A+AN + + S Sbjct: 199 EEIVSFLKEPDKYTIVGAKIPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEM 258 Query: 359 -VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---E 526 + ++ R L ++++ I ID D + RE R GG E Sbjct: 259 FIGIGAARVRDLFKKASENAPCIVFID-EIDAVGRE-------------RGAGVGGGNDE 304 Query: 527 RKITLSGLLNFIDGLWSTSG 586 R+ TL+ LL +DG G Sbjct: 305 REQTLNQLLTEMDGFKENKG 324
>KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like 1 (EC| 3.6.4.3) (Katanin p60 subunit A-like 1) (p60 katanin-like 1) Length = 488 Score = 41.6 bits (96), Expect = 0.002 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSVH--DNSSLQR 385 ++++ I + WK G L+ GPPGTGK+ L A+A FN+ L+S + ++ L R Sbjct: 230 DFFKGIRRPWK-GVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVR 288 Query: 386 LLIDMSN---KSILVIEDID--CSFDTMSREDRKDHSLEDE 493 LL +M+ + + I++ID CS S E ++ E Sbjct: 289 LLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSE 329
>KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-like 1 (EC| 3.6.4.3) (Katanin p60 subunit A-like 1) (p60 katanin-like 1) Length = 488 Score = 41.6 bits (96), Expect = 0.002 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSVH--DNSSLQR 385 ++++ I + WK G L+ GPPGTGK+ L A+A FN+ L+S + ++ L R Sbjct: 230 DFFKGIRRPWK-GVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVR 288 Query: 386 LLIDMSN---KSILVIEDID--CSFDTMSREDRKDHSLEDE 493 LL +M+ + + I++ID CS S E ++ E Sbjct: 289 LLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSE 329
>PEX6_YARLI (P36966) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome| biosynthesis protein PAY4) Length = 1024 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/59 (35%), Positives = 33/59 (55%) Frame = +2 Query: 170 GLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 G+K+ +LD ++ LK ++ G + G L YGPPGTGK+ L A+A N + + Sbjct: 726 GVKKDILDTIETPLKYPHWFSD-GVKKRSGILFYGPPGTGKTLLAKAIATTFSLNFFSV 783
>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase| Length = 1229 Score = 41.6 bits (96), Expect = 0.002 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL---DLSSVHDNSSL 379 LK E + IG + +G L++G PGTGK+S+ A+AN Y + ++ S H S Sbjct: 547 LKYPEIFMSIGISAPKGVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESE 606 Query: 380 QRLLIDMSNKS-----ILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLS 544 Q+L S I+ I++ID ++ + ++ LE K +S Sbjct: 607 QKLRKIFKKASEKTPCIIFIDEID---SIANKRSKSNNELE--------------KRVVS 649 Query: 545 GLLNFIDGL 571 LL +DGL Sbjct: 650 QLLTLMDGL 658 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/42 (42%), Positives = 25/42 (59%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFN 334 L+ K Y + + +G LLYGPPG GK+ L A+AN + N Sbjct: 954 LEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIANECKAN 995
>FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) Length = 706 Score = 41.6 bits (96), Expect = 0.002 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 7/157 (4%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLD--DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA 310 P + T A G QA L+ ++ FLK + Y +G +G LL GPPGTGK+ L A Sbjct: 246 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARA 305 Query: 311 MANYLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKD 475 +A + S V +S R L + + I ID D + R+ + Sbjct: 306 VAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFID-EIDAVGRQ--RG 362 Query: 476 HSLEDEDDGRDYRTGGERKITLSGLLNFIDGLWSTSG 586 L +D ER+ T++ LL +DG SG Sbjct: 363 AGLGGGND--------EREQTINQLLTEMDGFSGNSG 391
>KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-like 1 (EC| 3.6.4.3) (Katanin p60 subunit A-like 1) (p60 katanin-like 1) Length = 490 Score = 41.6 bits (96), Expect = 0.002 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYDLDLSSVH--DNSSLQR 385 ++++ I + WK G L+ GPPGTGK+ L A+A FN+ L+S + ++ L R Sbjct: 232 DFFKGIRRPWK-GVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVR 290 Query: 386 LLIDMSN---KSILVIEDID--CSFDTMSREDRKDHSLEDE 493 LL +M+ + + I++ID CS S E ++ E Sbjct: 291 LLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSE 331
>CDCH_HALSA (Q9HPF0) Protein cdcH| Length = 742 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 8/94 (8%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL---D 349 Q V + ++ +K + +Q++G +G LL+GPPGTGK+ L A+AN + + + + Sbjct: 199 QRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPE 258 Query: 350 LSSVHDNSSLQRLL-----IDMSNKSILVIEDID 436 + S + S Q+L + SI+ I+++D Sbjct: 259 IISKYYGESEQQLREIFEDAKDDSPSIIFIDELD 292 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/53 (39%), Positives = 30/53 (56%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFN 334 K V + ++ L + E + R+G G LLYGPPGTGK+ + A+AN N Sbjct: 471 KNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNAN 523
>PSMR1_HALSA (Q9HNP9) Proteasome-activating nucleotidase 1 (Proteasome| regulatory subunit 1) Length = 411 Score = 41.2 bits (95), Expect = 0.002 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L E + +G G LL+GPPGTGK+ L A+AN +++ +L + + S Sbjct: 172 LVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGS 231 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 L R L +++ + +I+ I++ID R D K T G+ ++ T Sbjct: 232 RLVRDLFELAEQKDPAIIFIDEIDAV--AAKRTDSK--------------TSGDAEVQRT 275 Query: 539 LSGLLNFIDGLWSTSGEERIMIFT 610 + LL+ +DG + G+ RI+ T Sbjct: 276 MMQLLSEMDG-FDERGDIRIIAAT 298
>PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-binding protein| 10) (TBP-10) Length = 404 Score = 41.2 bits (95), Expect = 0.002 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 12/137 (8%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA-----MANYLRFNLYDLDLSSVHDNS 373 + KE ++ +G +G L+YGPPGTGK+ L A A +L+ L + D + Sbjct: 171 MNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGA 230 Query: 374 SLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 L R ++ + SI+ I+++D FD+ DR E + Sbjct: 231 KLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDR------------------EVQ 272 Query: 533 ITLSGLLNFIDGLWSTS 583 T+ LLN +DG T+ Sbjct: 273 RTMLELLNQLDGFQPTT 289
>YME1_CAEEL (P54813) Protein YME1 homolog (EC 3.4.24.-)| Length = 676 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 ++++ +LK E Y R+G +G LL GPPGTGK+ L A+A Sbjct: 213 VEEIVDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKTLLARAIA 255
>FTSH_BUCAP (Q8K9G8) Cell division protein ftsH (EC 3.4.24.-)| Length = 613 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 + +L +LK +Q++G +G L+ GPPGTGK+ L A+A + + + S Sbjct: 164 VSELVEYLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 Query: 359 --VHDNSSLQRLLIDMSNKS---ILVIEDID 436 V +S R + + + KS I+ I++ID Sbjct: 224 MFVGVGASRVRDMFEHARKSAPCIIFIDEID 254
>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)| Length = 415 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 KQ + + ++ L E Y++IG RG L+YGPPG GK+ L A+A++ Sbjct: 171 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHH 219
>RFCL_ARCFU (O29072) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (afRFC large subunit) (afRFCla) Length = 479 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Frame = +2 Query: 242 KAWKRG---YLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLL 391 K+WKRG LL GPPG GK+SL A+AN + + +L+ S ++R++ Sbjct: 30 KSWKRGSKPLLLAGPPGVGKTSLALALANTMGWEAVELNASDQRSWRVIERIV 82
>MEI1_CAEEL (P34808) Meiotic spindle formation protein mei-1 (EC 3.6.4.3)| (Katanin ATPase-containing subunit) Length = 472 Score = 41.2 bits (95), Expect = 0.002 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 8/96 (8%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLR---FNLYD 343 +KQ + + + L E++Q + WK +L GPPGTGK+ + A+A+ F + Sbjct: 201 VKQVLHEAVTLPLLVPEFFQGLRSPWK-AMVLAGPPGTGKTLIARAIASESSSTFFTVSS 259 Query: 344 LDLSSV--HDNSSLQRLLIDMSN---KSILVIEDID 436 DLSS D+ + RLL +++ SI+ I++ID Sbjct: 260 TDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEID 295
>RUVB_FUSNN (Q8RE97) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/99 (28%), Positives = 42/99 (42%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 P SF+ LK+ + + KR I LLYGPPG GK++L +A Sbjct: 22 PKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHI--------LLYGPPGLGKTTLAGVIA 73 Query: 317 NYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 N ++ NL + L +L + IL I++I Sbjct: 74 NEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI 112
>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 398 Score = 41.2 bits (95), Expect = 0.002 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDNS 373 L + E + +G +G LLYGPPGTGK+ L A+AN R + S + + + Sbjct: 161 LLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGA 220 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 L R + ++ + SI+ I+++D + D T G+R++ T Sbjct: 221 RLVREVFQLAKEKAPSIIFIDELDAIAARRTNSD----------------TSGDREVQRT 264 Query: 539 LSGLLNFIDG 568 + LL +DG Sbjct: 265 MMQLLAELDG 274
>RFCL_METJA (Q58294) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 516 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Frame = +2 Query: 110 SWQGINHHHPASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTG 289 SW + + P S + +A +K+ + ++ +LK + + LL GPPG G Sbjct: 3 SW--VEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGET---------PKPILLVGPPGCG 51 Query: 290 KSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKS-------ILVIEDID 436 K++L A+AN F + +L+ S ++S++++++ + S ++V++++D Sbjct: 52 KTTLAYALANDYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLIVLDEVD 107
>PEX6_YEAST (P33760) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome| biosynthesis protein PAS8) Length = 1030 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K +LD +D LK E + G + G L YGPPGTGK+ + A+A N + + Sbjct: 740 VKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKAIATNFSLNFFSV 796
>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)| (TBP-7) Length = 418 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 KQ V + ++ L E Y++IG RG L+YGPPG GK+ L A+A++ Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222
>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)| (MB67-interacting protein) (TAT-binding protein 7) (TBP-7) (CIP21) Length = 418 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 KQ V + ++ L E Y++IG RG L+YGPPG GK+ L A+A++ Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222
>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)| (MB67-interacting protein) (TAT-binding protein 7) (TBP-7) Length = 418 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +2 Query: 176 KQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 KQ V + ++ L E Y++IG RG L+YGPPG GK+ L A+A++ Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222
>PEX6_CANGA (Q6FW67) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1017 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K A+++ +D LK E + G + G L YGPPGTGK+ L A+A N + + Sbjct: 726 VKDAIMETIDLPLKHPELFGS-GLKKRSGILFYGPPGTGKTLLAKAIATNFSLNFFSV 782
>RUVB_MYCH2 (Q600N3) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 318 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/99 (28%), Positives = 47/99 (47%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 P+SFE L + + + KRK+ I L YGPPGTGK++L +A Sbjct: 9 PSSFENFIGQKKLVETLQILISSSQKRKQSLDHI--------LFYGPPGTGKTTLANIVA 60 Query: 317 NYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 N L + + + S + +L ++S +I+ I++I Sbjct: 61 NVLEAKIKYVQGPLLEKKSDVLAVLANISPDTIIFIDEI 99
>FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 679 Score = 40.8 bits (94), Expect = 0.003 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 8/157 (5%) Frame = +2 Query: 140 ASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN 319 A F+ +A KQ +++ ++ FLK + IG +G LL GPPGTGK+ L A+A Sbjct: 163 AKFKDVAGADEEKQELVEVVE-FLKDPRKFSAIGARIPKGVLLVGPPGTGKTLLARAVAG 221 Query: 320 YLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSL 484 + + S V +S R L + + K+ I ID D + R+ Sbjct: 222 EAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFID-EIDAVGRQ------- 273 Query: 485 EDEDDGRDYRTGG---ERKITLSGLLNFIDGLWSTSG 586 R GG ER+ TL+ LL +DG + G Sbjct: 274 ------RGAGLGGGHDEREQTLNQLLVEMDGFSANEG 304
>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2| (p97/CDC48 homolog 2) Length = 810 Score = 40.8 bits (94), Expect = 0.003 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 8/129 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN------YLRFNLYDLDLSSVHDN 370 L+ + ++ IG RG LL+GPPGTGK+ + A+AN +L + S Sbjct: 229 LRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESE 288 Query: 371 SSLQRLLIDMSNKS--ILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLS 544 S+L++ + S IL I++I D ++ + K H G K +S Sbjct: 289 SNLRKAFAECEKNSPAILFIDEI----DAIAPKREKAH-------------GEVEKRIVS 331 Query: 545 GLLNFIDGL 571 LL +DGL Sbjct: 332 QLLTLMDGL 340 Score = 38.5 bits (88), Expect = 0.016 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 ++ E Y + G RG L YGPPG GK+ L A+AN + N + Sbjct: 502 VEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISI 547
>RUVB_MYCHJ (Q4A9R6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 312 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/99 (28%), Positives = 47/99 (47%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 P+SFE L + + + KRK+ I L YGPPGTGK++L +A Sbjct: 3 PSSFENFIGQKKLVETLQILISSSQKRKQSLDHI--------LFYGPPGTGKTTLANIVA 54 Query: 317 NYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 N L + + + S + +L ++S +I+ I++I Sbjct: 55 NVLEAKIKYVQGPLLEKKSDVLAVLANISPDTIIFIDEI 93
>RUVB_MYCH7 (Q4A7W4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 312 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/99 (28%), Positives = 47/99 (47%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 P+SFE L + + + KRK+ I L YGPPGTGK++L +A Sbjct: 3 PSSFENFIGQKKLVETLQILISSSQKRKQSLDHI--------LFYGPPGTGKTTLANIVA 54 Query: 317 NYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 N L + + + S + +L ++S +I+ I++I Sbjct: 55 NVLEAKIKYVQGPLLEKKSDVLAVLANISPDTIIFIDEI 93
>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding| protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1) Length = 423 Score = 40.8 bits (94), Expect = 0.003 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 12/144 (8%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 + +E +Q++G +G LLYGPPGTGK+ + A A +L+ L + D + Sbjct: 190 MTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 249 Query: 374 SLQRLLIDMSNKS---ILVIEDIDC----SFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 L R ++ + I+ I++ID FD+ DR E + Sbjct: 250 KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR------------------EVQ 291 Query: 533 ITLSGLLNFIDGLWSTSGEERIMI 604 T+ LLN +DG S ++RI + Sbjct: 292 RTMLELLNQLDGF---SSDDRIKV 312
>FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 631 Score = 40.8 bits (94), Expect = 0.003 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Frame = +2 Query: 191 DDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS---- 358 +++ FLK+ E + +G +G LL GPPGTGK+ L A+A + + S Sbjct: 186 EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 245 Query: 359 -VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---E 526 V +S R L + ++ I ID D + R+ R GG E Sbjct: 246 FVGVGASRVRDLFKKAKENSPCIVFID-EIDAVGRQ-------------RGTGIGGGNDE 291 Query: 527 RKITLSGLLNFIDGLWSTSG 586 R+ TL+ LL +DG +G Sbjct: 292 REQTLNQLLTEMDGFEGNTG 311
>PEX6_ASHGO (Q74Z13) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1021 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/58 (37%), Positives = 31/58 (53%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K +LD +D LK E + G + G L YGPPGTGK+ L A+A N + + Sbjct: 731 VKGEILDTIDMPLKFPELFAS-GMKKRSGILFYGPPGTGKTLLAKAVATNFSLNFFSV 787
>FTSH_BUCBP (Q89AF2) Cell division protein ftsH (EC 3.4.24.-)| Length = 610 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 + +L +LK +Q++G +G L+ GPPGTGK+ L A+A + + + S Sbjct: 164 VQELVEYLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 Query: 359 --VHDNSSLQRLLIDMSNK---SILVIEDID 436 V +S R + + S K I+ I++ID Sbjct: 224 MFVGVGASRVRDMFEHSRKVAPCIIFIDEID 254
>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) Length = 805 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ ++ IG RG LLYGPPGTGK+ + A+AN + N ++ ++ Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 Query: 374 SLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLL 553 S R + + K+ I ID D ++ + K H G + +S LL Sbjct: 284 SNLRKAFEEAEKNAPAIIFID-ELDAIAPKREKTH-------------GEVERRIVSQLL 329 Query: 554 NFIDGL 571 +DGL Sbjct: 330 TLMDGL 335 Score = 36.2 bits (82), Expect = 0.078 Identities = 21/58 (36%), Positives = 29/58 (50%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 L Q ++ D+FLK G +G L YGPPG GK+ L A+AN + N + Sbjct: 492 LVQYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542
>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ ++ IG RG LLYGPPGTGK+ + A+AN + N ++ ++ Sbjct: 223 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 282 Query: 374 SLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLL 553 S R + + K+ I ID D ++ + K H G + +S LL Sbjct: 283 SNLRKAFEEAEKNAPAIIFID-ELDAIAPKREKTH-------------GEVERRIVSQLL 328 Query: 554 NFIDGL 571 +DGL Sbjct: 329 TLMDGL 334 Score = 36.2 bits (82), Expect = 0.078 Identities = 21/58 (36%), Positives = 29/58 (50%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 L Q ++ D+FLK G +G L YGPPG GK+ L A+AN + N + Sbjct: 491 LVQYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 541
>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ ++ IG RG LLYGPPGTGK+ + A+AN + N ++ ++ Sbjct: 223 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 282 Query: 374 SLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLL 553 S R + + K+ I ID D ++ + K H G + +S LL Sbjct: 283 SNLRKAFEEAEKNAPAIIFID-ELDAIAPKREKTH-------------GEVERRIVSQLL 328 Query: 554 NFIDGL 571 +DGL Sbjct: 329 TLMDGL 334 Score = 36.2 bits (82), Expect = 0.078 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +2 Query: 188 LDDLDRF-LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 L DL ++ ++ + + + G +G L YGPPG GK+ L A+AN + N + Sbjct: 488 LQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 541
>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ ++ IG RG LLYGPPGTGK+ + A+AN + N ++ ++ Sbjct: 223 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 282 Query: 374 SLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLL 553 S R + + K+ I ID D ++ + K H G + +S LL Sbjct: 283 SNLRKAFEEAEKNAPAIIFID-ELDAIAPKREKTH-------------GEVERRIVSQLL 328 Query: 554 NFIDGL 571 +DGL Sbjct: 329 TLMDGL 334 Score = 36.2 bits (82), Expect = 0.078 Identities = 21/58 (36%), Positives = 29/58 (50%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 L Q ++ D+FLK G +G L YGPPG GK+ L A+AN + N + Sbjct: 491 LVQYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 541
>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ ++ IG RG LLYGPPGTGK+ + A+AN + N ++ ++ Sbjct: 223 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 282 Query: 374 SLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLL 553 S R + + K+ I ID D ++ + K H G + +S LL Sbjct: 283 SNLRKAFEEAEKNAPAIIFID-ELDAIAPKREKTH-------------GEVERRIVSQLL 328 Query: 554 NFIDGL 571 +DGL Sbjct: 329 TLMDGL 334 Score = 36.2 bits (82), Expect = 0.078 Identities = 21/58 (36%), Positives = 29/58 (50%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 L Q ++ D+FLK G +G L YGPPG GK+ L A+AN + N + Sbjct: 491 LVQYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 541
>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast| precursor (EC 3.4.24.-) Length = 704 Score = 40.4 bits (93), Expect = 0.004 Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 8/141 (5%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK + Y +G +G LL GPPGTGK+ L A+A + S Sbjct: 262 LQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 321 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG--- 523 V +S R L + + I ID D + R+ R GG Sbjct: 322 LFVGVGASRVRDLFEKAKSKAPCIVFID-EIDAVGRQ-------------RGAGMGGGND 367 Query: 524 ERKITLSGLLNFIDGLWSTSG 586 ER+ T++ LL +DG SG Sbjct: 368 EREQTINQLLTEMDGFSGNSG 388
>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast| precursor (EC 3.4.24.-) Length = 716 Score = 40.4 bits (93), Expect = 0.004 Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 8/141 (5%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK + Y +G +G LL GPPGTGK+ L A+A + S Sbjct: 274 LQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 333 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG--- 523 V +S R L + + I ID D + R+ R GG Sbjct: 334 LFVGVGASRVRDLFEKAKSKAPCIVFID-EIDAVGRQ-------------RGAGMGGGND 379 Query: 524 ERKITLSGLLNFIDGLWSTSG 586 ER+ T++ LL +DG SG Sbjct: 380 EREQTINQLLTEMDGFSGNSG 400
>FTSH1_SYNY3 (Q55700) Cell division protein ftsH homolog 1 (EC 3.4.24.-)| Length = 627 Score = 40.4 bits (93), Expect = 0.004 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK+ E + +G +G LL GPPGTGK+ L A+A + + S Sbjct: 184 LQEVVTFLKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 243 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG--- 523 V +S R L + ++ + ID D + R+ R GG Sbjct: 244 MFVGVGASRVRDLFKKAKENAPCLIFID-EIDAVGRQ-------------RGAGIGGGND 289 Query: 524 ERKITLSGLLNFIDGLWSTSG 586 ER+ TL+ LL +DG +G Sbjct: 290 EREQTLNQLLTEMDGFEGNTG 310
>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)| Length = 1388 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K AV + + L+R E + + G + G L YGPPGTGK+ L A+A N + + Sbjct: 1002 VKDAVTETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEYSLNFFSV 1058
>RFCL_METKA (Q8TZC5) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 510 Score = 40.0 bits (92), Expect = 0.005 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Frame = +2 Query: 254 RGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 R LL+GPPGTGK+S A+A+ +++ +L+ S + +++++ S L+ Sbjct: 42 RAVLLHGPPGTGKTSAAYALAHDFGWDVIELNASDKRTRNVIEKIVGGASTSRSLLRMTR 101 Query: 434 DCSFDTMSREDRKDH--SLEDEDDGRDYR--TGGERKIT 538 + D E D L DE DG D R GG +T Sbjct: 102 EAGGDYEHVEGHSDRVLVLVDEVDGIDPREDRGGVTALT 140
>PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-binding protein 1)| (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding protein homolog SATA) Length = 439 Score = 40.0 bits (92), Expect = 0.005 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 12/100 (12%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA-----MANYLRFNLYDLDLSSVHDNS 373 + KE ++ +G +G L+YGPPGTGK+ L A A +L+ L + D + Sbjct: 206 MNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGA 265 Query: 374 SLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRK 472 L R ++ + SI+ I+++D FD+ DR+ Sbjct: 266 KLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDRE 305
>PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-binding protein 1)| (TBP-1) (Proteasome subunit P50) Length = 439 Score = 40.0 bits (92), Expect = 0.005 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 12/100 (12%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA-----MANYLRFNLYDLDLSSVHDNS 373 + KE ++ +G +G L+YGPPGTGK+ L A A +L+ L + D + Sbjct: 206 MNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGA 265 Query: 374 SLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRK 472 L R ++ + SI+ I+++D FD+ DR+ Sbjct: 266 KLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDRE 305
>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1459 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K A+++ + L+R E + + G + G L YGPPGTGK+ L A+A N + + Sbjct: 1038 VKDALVETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEFSLNFFSV 1094
>MSP1_YEAST (P28737) Protein MSP1 (TAT-binding homolog 4)| Length = 362 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%) Frame = +2 Query: 257 GYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHD-----NSSLQRLLIDMSNK---S 412 G LLYGPPG GK+ L A+A N + +SS+ D ++ + + ++NK Sbjct: 128 GVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPC 187 Query: 413 ILVIEDIDCSFDTMSREDRK 472 I+ I++ID S D + Sbjct: 188 IIFIDEIDSFLRERSSTDHE 207
>PEX1_HUMAN (O43933) Peroxisome biogenesis factor 1 (Peroxin-1) (Peroxisome| biogenesis disorder protein 1) Length = 1283 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +2 Query: 110 SWQGINHHHPAS--FETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPG 283 S + +N H P ++ + ++Q ++D + K E + + + G LLYGPPG Sbjct: 825 SLRSVNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPG 884 Query: 284 TGKSSLVAAMANYLRFN 334 TGK+ L +A R N Sbjct: 885 TGKTLLAGVIARESRMN 901
>CDC48_YEAST (P25694) Cell division control protein 48| Length = 835 Score = 40.0 bits (92), Expect = 0.005 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ + ++ IG RG L+YGPPGTGK+ + A+AN + N ++ ++ Sbjct: 234 LRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESE 293 Query: 374 SLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLSGLL 553 S R + + K+ I ID D+++ + RD G + +S LL Sbjct: 294 SNLRKAFEEAEKNAPAIIFID-EIDSIAPK-------------RDKTNGEVERRVVSQLL 339 Query: 554 NFIDGLWSTS 583 +DG+ + S Sbjct: 340 TLMDGMKARS 349 Score = 37.7 bits (86), Expect = 0.027 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFN 334 +K+ + + ++ + + Y + G + +G L YGPPGTGK+ L A+A + N Sbjct: 495 IKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKAVATEVSAN 548
>FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 614 Score = 40.0 bits (92), Expect = 0.005 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 10/157 (6%) Frame = +2 Query: 146 FETLAMDPGLKQAV--LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN 319 FE +A G+++A L ++ FLK + +G +G LL GPPGTGK+ L A+A Sbjct: 170 FEDVA---GIEEAKEELQEIVAFLKDSRKFTNVGATIPKGVLLVGPPGTGKTLLAKAIAG 226 Query: 320 YLRFNLYDLDLSS-----VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSL 484 + + S V +S R L + + I ID D + R+ Sbjct: 227 EASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFID-EIDAVGRQ------- 278 Query: 485 EDEDDGRDYRTGG---ERKITLSGLLNFIDGLWSTSG 586 R GG ER+ TL+ LL +DG +G Sbjct: 279 ------RGVGIGGGNDEREQTLNQLLTEMDGFSGDTG 309
>VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein VPS4 (END13| protein) (DOA4-independent degradation protein 6) Length = 437 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 8/68 (11%) Frame = +2 Query: 257 GYLLYGPPGTGKSSL---VAAMANYLRFNLYDLDLSS--VHDNSSLQRLLIDMSNK---S 412 G LLYGPPGTGKS L VA AN F++ DL S + ++ L + L M+ + S Sbjct: 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 227 Query: 413 ILVIEDID 436 I+ I+++D Sbjct: 228 IIFIDEVD 235
>VPS4A_MOUSE (Q8VEJ9) Vacuolar sorting protein 4a| Length = 437 Score = 40.0 bits (92), Expect = 0.005 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 9/98 (9%) Frame = +2 Query: 170 GLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA----NYLRFNL 337 G K+A+ + + +K + W RG LL+GPPGTGKS L A+A N F++ Sbjct: 134 GAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVATEANNSTFFSV 192 Query: 338 YDLDLSS--VHDNSSLQRLLIDMSNK---SILVIEDID 436 DL S + ++ L + L +++ + SI+ I+++D Sbjct: 193 SSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVD 230
>VPS4A_HUMAN (Q9UN37) Vacuolar sorting protein 4a (SKD2 protein) (hVPS4)| (VPS4-1) Length = 437 Score = 40.0 bits (92), Expect = 0.005 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 9/98 (9%) Frame = +2 Query: 170 GLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA----NYLRFNL 337 G K+A+ + + +K + W RG LL+GPPGTGKS L A+A N F++ Sbjct: 134 GAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVATEANNSTFFSV 192 Query: 338 YDLDLSS--VHDNSSLQRLLIDMSNK---SILVIEDID 436 DL S + ++ L + L +++ + SI+ I+++D Sbjct: 193 SSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVD 230
>PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-binding protein| 6) (TBP-6) Length = 405 Score = 40.0 bits (92), Expect = 0.005 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 12/100 (12%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA-----MANYLRFNLYDLDLSSVHDNS 373 + KE ++ +G +G L+YGPPGTGK+ L A A +L+ L + D + Sbjct: 190 MNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGA 249 Query: 374 SLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRK 472 L R ++ + SI+ I+++D FD+ DR+ Sbjct: 250 KLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDRE 289
>RUVB_LACPL (Q88V03) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 336 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK++L +AN ++ N+ ++ L LL ++ IL I++I Sbjct: 59 LLYGPPGLGKTTLAMVIANEMQVNIRTTSGPAIEKPGDLVALLNELEPGDILFIDEI 115
>DNAC_BUCBP (Q89B30) DNA replication protein dnaC| Length = 246 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 13/91 (14%) Frame = +2 Query: 218 KEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHD---------- 367 KEY K ++ G PGTGK+ L +A+ NYL N + + +V D Sbjct: 89 KEYAHNFNKNMA-SFIFSGKPGTGKNHLASAIGNYLILNGKSVLIVTVADLMSNIKSTFN 147 Query: 368 ---NSSLQRLLIDMSNKSILVIEDIDCSFDT 451 N + +RLL ++SN +L+I++I ++ Sbjct: 148 GNNNVTEERLLNNLSNVDLLMIDEIGMQIES 178
>PRS6A_MOUSE (O88685) 26S protease regulatory subunit 6A (TAT-binding protein 1)| (TBP-1) Length = 442 Score = 40.0 bits (92), Expect = 0.005 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 12/100 (12%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAA-----MANYLRFNLYDLDLSSVHDNS 373 + KE ++ +G +G L+YGPPGTGK+ L A A +L+ L + D + Sbjct: 209 MNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGA 268 Query: 374 SLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRK 472 L R ++ + SI+ I+++D FD+ DR+ Sbjct: 269 KLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDRE 308
>RUVB_LACAC (Q5FLX2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 349 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK++L +AN L +L ++ L LL D+ +L I++I Sbjct: 72 LLYGPPGLGKTTLAFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEI 128
>FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 628 Score = 40.0 bits (92), Expect = 0.005 Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 8/135 (5%) Frame = +2 Query: 206 FLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDN 370 FLK+ E + +G +G LL GPPGTGK+ L A+A + + S V Sbjct: 191 FLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG 250 Query: 371 SSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---ERKITL 541 +S R L + + I ID D + R+ R GG ER+ TL Sbjct: 251 ASRVRDLFKKAKDNAPCIVFID-EIDAVGRQ-------------RGTGVGGGNDEREQTL 296 Query: 542 SGLLNFIDGLWSTSG 586 + LL +DG +G Sbjct: 297 NQLLTEMDGFEGNTG 311
>FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)| Length = 644 Score = 39.7 bits (91), Expect = 0.007 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Frame = +2 Query: 194 DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS----- 358 +L +L+ +Q++G +G L+ GPPGTGK+ L A+A + + + S Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 Query: 359 VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---ER 529 V +S R + + + K+ I ID D + R+ R GG ER Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFID-EIDAVGRQ-------------RGAGLGGGHDER 271 Query: 530 KITLSGLLNFIDGLWSTSG 586 + TL+ +L +DG G Sbjct: 272 EQTLNQMLVEMDGFEGNEG 290
>FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)| Length = 644 Score = 39.7 bits (91), Expect = 0.007 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Frame = +2 Query: 194 DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS----- 358 +L +L+ +Q++G +G L+ GPPGTGK+ L A+A + + + S Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 Query: 359 VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---ER 529 V +S R + + + K+ I ID D + R+ R GG ER Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFID-EIDAVGRQ-------------RGAGLGGGHDER 271 Query: 530 KITLSGLLNFIDGLWSTSG 586 + TL+ +L +DG G Sbjct: 272 EQTLNQMLVEMDGFEGNEG 290
>FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)| Length = 644 Score = 39.7 bits (91), Expect = 0.007 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Frame = +2 Query: 194 DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS----- 358 +L +L+ +Q++G +G L+ GPPGTGK+ L A+A + + + S Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 Query: 359 VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---ER 529 V +S R + + + K+ I ID D + R+ R GG ER Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFID-EIDAVGRQ-------------RGAGLGGGHDER 271 Query: 530 KITLSGLLNFIDGLWSTSG 586 + TL+ +L +DG G Sbjct: 272 EQTLNQMLVEMDGFEGNEG 290
>FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)| Length = 644 Score = 39.7 bits (91), Expect = 0.007 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Frame = +2 Query: 194 DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS----- 358 +L +L+ +Q++G +G L+ GPPGTGK+ L A+A + + + S Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 Query: 359 VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---ER 529 V +S R + + + K+ I ID D + R+ R GG ER Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFID-EIDAVGRQ-------------RGAGLGGGHDER 271 Query: 530 KITLSGLLNFIDGLWSTSG 586 + TL+ +L +DG G Sbjct: 272 EQTLNQMLVEMDGFEGNEG 290
>FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)| Length = 644 Score = 39.7 bits (91), Expect = 0.007 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Frame = +2 Query: 194 DLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS----- 358 +L +L+ +Q++G +G L+ GPPGTGK+ L A+A + + + S Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 Query: 359 VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---ER 529 V +S R + + + K+ I ID D + R+ R GG ER Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFID-EIDAVGRQ-------------RGAGLGGGHDER 271 Query: 530 KITLSGLLNFIDGLWSTSG 586 + TL+ +L +DG G Sbjct: 272 EQTLNQMLVEMDGFEGNEG 290
>FTSH3_SYNY3 (P73437) Cell division protein ftsH homolog 3 (EC 3.4.24.-)| Length = 628 Score = 39.7 bits (91), Expect = 0.007 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 5/147 (3%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK + Y +G +G LL GPPGTGK+ L A A + + S Sbjct: 186 LSEVVDFLKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVE 245 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 V ++ R L + + K I ID D + + + D ER+ Sbjct: 246 LFVGAGAARVRDLFEQAKKQAPCIVFID-ELDAIGKSRASGAFMGGND---------ERE 295 Query: 533 ITLSGLLNFIDGLWSTSGEERIMIFTT 613 TL+ LL +DG +S +G I++ T Sbjct: 296 QTLNQLLTEMDG-FSAAGATVIVLAAT 321
>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7| Length = 435 Score = 39.7 bits (91), Expect = 0.007 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 10/144 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L E Y +G +G LLYGPPGTGK+ A+AN ++R +L V + + Sbjct: 197 LLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA 256 Query: 374 SLQRLLIDMSNKS---ILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKI--T 538 + R L +M+ ++ ++ID DDG+ GG+ ++ T Sbjct: 257 RMVRELFEMARTKKACLIFFDEIDAVGGARF------------DDGQ----GGDNEVQRT 300 Query: 539 LSGLLNFIDGLWSTSGEERIMIFT 610 + L+N +DG + G ++++ T Sbjct: 301 MLELINQLDG-FDPRGNIKVLMAT 323
>PEX6_NEUCR (Q7SGP2) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1381 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 +K A+ + + L+R E + + G + G L YGPPGTGK+ L A+A N + + Sbjct: 999 VKDAITETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEYSLNFFSV 1055
>RUVB_LEPIN (Q8F7Y2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 341 Score = 39.7 bits (91), Expect = 0.007 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%) Frame = +2 Query: 149 ETLAMDPGLKQAVLDDLDRFLKRKEY------YQRIGKAWKRGY---LLYGPPGTGKSSL 301 E + GL+ ++L + F+ +KE Y + K KR L+ GPPG GK++L Sbjct: 11 EEFEEESGLRPSLLSE---FIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTL 67 Query: 302 VAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 ++N L L + + L RLL M IL I++I Sbjct: 68 AGIISNELGTRLTITSAPVITKGADLARLLTSMGENEILFIDEI 111
>RUVB_LEPIC (P61534) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 341 Score = 39.7 bits (91), Expect = 0.007 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%) Frame = +2 Query: 149 ETLAMDPGLKQAVLDDLDRFLKRKEY------YQRIGKAWKRGY---LLYGPPGTGKSSL 301 E + GL+ ++L + F+ +KE Y + K KR L+ GPPG GK++L Sbjct: 11 EEFEEESGLRPSLLSE---FIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTL 67 Query: 302 VAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 ++N L L + + L RLL M IL I++I Sbjct: 68 AGIISNELGTRLTITSAPVITKGADLARLLTSMGENEILFIDEI 111
>RFCL_SULAC (Q4JAB1) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 437 Score = 39.7 bits (91), Expect = 0.007 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 9/75 (12%) Frame = +2 Query: 239 GKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL---------DLSSVHDNSSLQRLL 391 G+ + LLYGPPG GK++L A+A + L ++ D+ V + +S+ L Sbjct: 37 GEPTAKAVLLYGPPGVGKTTLAEALARDYKLELLEMNASDSRNLRDIKDVAERASISGSL 96 Query: 392 IDMSNKSILVIEDID 436 + K I+++++ID Sbjct: 97 FGIKGK-IILLDEID 110
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D| (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) Length = 815 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = +2 Query: 143 SFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 S+E + +K+ + + + ++ E +++ G + +G L YGPPG GK+ L A+AN Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538 Query: 323 LRFNLYDL 346 + N + Sbjct: 539 CQANFISI 546 Score = 38.9 bits (89), Expect = 0.012 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 8/131 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ + ++ IG +G LLYGPPG+GK+ + A+AN + N ++ ++ Sbjct: 228 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESE 287 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLS 544 S R + + K SI+ I++I D+++ + K H G + +S Sbjct: 288 SNLRKAFEEAEKNAPSIIFIDEI----DSIAPKREKTH-------------GEVERRIVS 330 Query: 545 GLLNFIDGLWS 577 LL +DGL S Sbjct: 331 QLLTLMDGLKS 341
>RUVB_STRA5 (Q8E2D9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL ++ + L +L D+ +L I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEI 112
>RUVB_STRA3 (Q8E7U6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL ++ + L +L D+ +L I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEI 112
>RUVB_STRA1 (Q3K3X8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL ++ + L +L D+ +L I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEI 112
>AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)| Length = 802 Score = 39.7 bits (91), Expect = 0.007 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = +2 Query: 170 GLKQAVLDDLD--RFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 G ++A L+ ++ FLK + YQ +G +G +L GPPGTGK+ L A A Sbjct: 311 GCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 361
>NVL_MOUSE (Q9DBY8) Nuclear valosin-containing protein-like (Nuclear VCP-like| protein) (NVLp) Length = 855 Score = 39.7 bits (91), Expect = 0.007 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = +2 Query: 164 DPGLKQAVLDDLDRFL---KRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYL 325 D G A L ++ + L + E YQ +G RG LL+GPPG GK+ L A+A L Sbjct: 265 DVGGNDATLKEVCKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGEL 321 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN 319 ++ + ++ +G G LL GPPG GK+ L A+AN Sbjct: 600 VRNPDQFRTLGLGTPAGILLAGPPGCGKTLLAKAVAN 636
>VPS4B_MOUSE (P46467) Vacuolar sorting protein 4b (SKD1 protein)| Length = 444 Score = 39.7 bits (91), Expect = 0.007 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%) Frame = +2 Query: 170 GLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA----NYLRFNL 337 G K+A+ + + +K + W RG LL+GPPGTGKS L A+A N F++ Sbjct: 141 GAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 Query: 338 YDLDLSS--VHDNSSLQRLLIDMSNK---SILVIEDID 436 DL S + ++ L + L ++ + SI+ I++ID Sbjct: 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEID 237
>VPS4B_HUMAN (O75351) Vacuolar sorting protein 4b (SKD1 protein)| Length = 444 Score = 39.7 bits (91), Expect = 0.007 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%) Frame = +2 Query: 170 GLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA----NYLRFNL 337 G K+A+ + + +K + W RG LL+GPPGTGKS L A+A N F++ Sbjct: 141 GAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 Query: 338 YDLDLSS--VHDNSSLQRLLIDMSNK---SILVIEDID 436 DL S + ++ L + L ++ + SI+ I++ID Sbjct: 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEID 237
>YME1_YEAST (P32795) Protein YME1 (EC 3.4.24.-) (TAT-binding homolog 11) (OSD1| protein) Length = 747 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 +A L+++ FLK Y+ +G +G LL GPPGTGK+ L A A Sbjct: 290 RAELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATA 335
>AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)| Length = 663 Score = 39.7 bits (91), Expect = 0.007 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = +2 Query: 170 GLKQAVLDDLD--RFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 G ++A L+ ++ FLK + YQ +G +G +L GPPGTGK+ L A A Sbjct: 178 GCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATA 228
>AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Paraplegin-like| protein) Length = 797 Score = 39.7 bits (91), Expect = 0.007 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = +2 Query: 170 GLKQAVLDDLD--RFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 G ++A L+ ++ FLK + YQ +G +G +L GPPGTGK+ L A A Sbjct: 312 GCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 362
>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1| (p97/CDC48 homolog 1) Length = 809 Score = 39.3 bits (90), Expect = 0.009 Identities = 24/77 (31%), Positives = 35/77 (45%) Frame = +2 Query: 89 MNDYGYGSWQGINHHHPASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLL 268 MND GY G+ E + + L+ + ++ IG RG LL Sbjct: 204 MNDIGYDDLGGVRKQLAQIKEMVELP--------------LRHPQLFKAIGIKPPRGILL 249 Query: 269 YGPPGTGKSSLVAAMAN 319 +GPPGTGK+ + A+AN Sbjct: 250 FGPPGTGKTLIARAVAN 266 Score = 38.5 bits (88), Expect = 0.016 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDL 346 ++ E Y + G RG L YGPPG GK+ L A+AN + N + Sbjct: 503 VEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISI 548
>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)| (Transitional endoplasmic reticulum ATPase E) Length = 810 Score = 39.3 bits (90), Expect = 0.009 Identities = 19/64 (29%), Positives = 36/64 (56%) Frame = +2 Query: 143 SFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 S+E + +K+ + + + ++ E +++ G + +G L YGPPG GK+ L A+AN Sbjct: 478 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 537 Query: 323 LRFN 334 + N Sbjct: 538 CQAN 541 Score = 38.1 bits (87), Expect = 0.021 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ + ++ IG +G LLYGPPG+GK+ + A+AN + N ++ ++ Sbjct: 227 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESE 286 Query: 374 SLQRLLIDMSNK---SILVIEDID 436 S R + + K SI+ I++ID Sbjct: 287 SNLRKAFEEAEKNAPSIIFIDEID 310
>CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C (AtCDC48c)| Length = 820 Score = 39.3 bits (90), Expect = 0.009 Identities = 17/39 (43%), Positives = 25/39 (64%) Frame = +2 Query: 203 RFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN 319 R +K+ + Y+ G + G+LLYGPPG GK+ + A AN Sbjct: 546 RPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAAAN 584 Score = 35.8 bits (81), Expect = 0.10 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Frame = +2 Query: 170 GLKQAVLDDLDRF----LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNL 337 G+K+ +LD+L+ + E +++IG G L +GPPG GK+ L A+AN Sbjct: 237 GIKK-ILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEAGVPF 295 Query: 338 YDLDLSSV 361 Y + + V Sbjct: 296 YKISATEV 303
>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48| Length = 815 Score = 39.3 bits (90), Expect = 0.009 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN 319 L+ + ++ IG RG L+YGPPGTGK+ + A+AN Sbjct: 244 LRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 280 Score = 36.2 bits (82), Expect = 0.078 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = +2 Query: 221 EYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN 319 E + R G +G L +GPPGTGK+ L A+AN Sbjct: 521 EKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIAN 553
>RFCL_METMP (Q6M0E9) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 486 Score = 39.3 bits (90), Expect = 0.009 Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 7/112 (6%) Frame = +2 Query: 122 INHHHPASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSL 301 + + P S +A KQA+++ ++ IG ++ LL GPPG+GK++L Sbjct: 5 VEKYRPKSLNDVAGHNKTKQALIEWIESI---------IGGQNQKPILLAGPPGSGKTTL 55 Query: 302 VAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMS-------NKSILVIEDID 436 A+AN F++ +L+ S + + +++ + ++++V++++D Sbjct: 56 AYAIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVD 107
>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing| protein homolog) (VCP) Length = 807 Score = 39.3 bits (90), Expect = 0.009 Identities = 19/64 (29%), Positives = 36/64 (56%) Frame = +2 Query: 143 SFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 S+E + +K+ + + + ++ E +++ G + +G L YGPPG GK+ L A+AN Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538 Query: 323 LRFN 334 + N Sbjct: 539 CQAN 542 Score = 38.9 bits (89), Expect = 0.012 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 8/131 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ + ++ IG +G LLYGPPG+GK+ + A+AN + N ++ ++ Sbjct: 228 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESE 287 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLS 544 S R + + K SI+ I++I D+++ + K H G + +S Sbjct: 288 SNLRKAFEEAEKNAPSIIFIDEI----DSIAPKREKTH-------------GEVERRIVS 330 Query: 545 GLLNFIDGLWS 577 LL +DGL S Sbjct: 331 QLLTLMDGLKS 341
>RUVB_BACLD (Q65GP6) Holliday junction DNA helicase ruvB| Length = 334 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK++L A +AN + NL ++ L +L + +L I++I Sbjct: 57 LLYGPPGLGKTTLAAIIANEMGVNLRTTSGPAIERPGDLAAILTALEPGDVLFIDEI 113
>Y2139_MYCBO (P63346) Putative AAA-family ATPase Mb2139c| Length = 609 Score = 38.9 bits (89), Expect = 0.012 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS 358 + + D ++ KE Y+ +G LLYGPPG GK+ + A+AN L + ++ Sbjct: 262 EQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDD 321 Query: 359 VHDNSS 376 H+ S Sbjct: 322 AHEAKS 327
>Y2115_MYCTU (P63345) Putative AAA-family ATPase Rv2115c/MT2175| Length = 609 Score = 38.9 bits (89), Expect = 0.012 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS 358 + + D ++ KE Y+ +G LLYGPPG GK+ + A+AN L + ++ Sbjct: 262 EQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDD 321 Query: 359 VHDNSS 376 H+ S Sbjct: 322 AHEAKS 327
>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog| Length = 805 Score = 38.9 bits (89), Expect = 0.012 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 8/131 (6%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ + ++ IG +G LLYGPPG+GK+ + A+AN + N ++ ++ Sbjct: 228 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESE 287 Query: 374 SLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERKITLS 544 S R + + K SI+ I++I D+++ + K H G + +S Sbjct: 288 SNLRKAFEEAEKNAPSIIFIDEI----DSIAPKREKTH-------------GEVERRIVS 330 Query: 545 GLLNFIDGLWS 577 LL +DGL S Sbjct: 331 QLLTLMDGLKS 341 Score = 38.5 bits (88), Expect = 0.016 Identities = 19/64 (29%), Positives = 36/64 (56%) Frame = +2 Query: 143 SFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANY 322 S+E + +K+ + + + ++ E +++ G + +G L YGPPG GK+ L A+AN Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEPPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538 Query: 323 LRFN 334 + N Sbjct: 539 CQAN 542
>LON1_BORBU (Q59185) ATP-dependent protease La (EC 3.4.21.53)| Length = 806 Score = 38.9 bits (89), Expect = 0.012 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 16/74 (21%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSS----------------LQRLLI 394 LL GPPG GK+S+ AA+A LR + + + D S +Q L I Sbjct: 386 LLVGPPGVGKTSIGAAIAKVLRTKFFRFSVGGMRDESEIKGHRRTYVGALPGKIIQGLRI 445 Query: 395 DMSNKSILVIEDID 436 +N + +I+++D Sbjct: 446 TKTNSPVFLIDEVD 459
>FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 652 Score = 38.9 bits (89), Expect = 0.012 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 8/141 (5%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK + + ++G G LL GPPGTGK+ L A+A + + S Sbjct: 199 LVEVVEFLKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 258 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG--- 523 V +S R L + + K+ I ID D + R+ R GG Sbjct: 259 MFVGVGASRVRSLFEDAKKAAPAIIFID-EIDAVGRQ-------------RGVGLGGGND 304 Query: 524 ERKITLSGLLNFIDGLWSTSG 586 ER+ TL+ LL +DG G Sbjct: 305 EREQTLNQLLIEMDGFEGNEG 325
>FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 652 Score = 38.9 bits (89), Expect = 0.012 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 8/141 (5%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK + + ++G G LL GPPGTGK+ L A+A + + S Sbjct: 199 LVEVVEFLKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 258 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG--- 523 V +S R L + + K+ I ID D + R+ R GG Sbjct: 259 MFVGVGASRVRSLFEDAKKAAPAIIFID-EIDAVGRQ-------------RGVGLGGGND 304 Query: 524 ERKITLSGLLNFIDGLWSTSG 586 ER+ TL+ LL +DG G Sbjct: 305 EREQTLNQLLIEMDGFEGNEG 325
>RUVB_SYMTH (Q67Q97) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 347 Score = 38.9 bits (89), Expect = 0.012 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Frame = +2 Query: 236 IGKAWKRG-----YLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDM 400 I A KRG LLYGPPG GK++L +A+ + NL ++ L +L + Sbjct: 44 IAAAKKRGEPLDHVLLYGPPGLGKTTLAHIIAHEMGVNLRITSGPAISHQGDLAAILTQL 103 Query: 401 SNKSILVIEDI 433 S +L +++I Sbjct: 104 SEGDVLFVDEI 114
>RUVB_NEIMA (Q9JUB0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 38.5 bits (88), Expect = 0.016 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 6/104 (5%) Frame = +2 Query: 140 ASFETLAMDPGLKQAVLDDLDRFLKRKEYYQR-IGKAWKRG-----YLLYGPPGTGKSSL 301 AS + ++ L+ LDD K KE I A KRG LL+GPPG GK++L Sbjct: 21 ASAQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTL 80 Query: 302 VAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 +A L NL + L LL ++ +L I++I Sbjct: 81 AHIIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEI 124
>RUVB_NEIG1 (Q5F8L2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 38.5 bits (88), Expect = 0.016 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 6/104 (5%) Frame = +2 Query: 140 ASFETLAMDPGLKQAVLDDLDRFLKRKEYYQR-IGKAWKRG-----YLLYGPPGTGKSSL 301 AS + ++ L+ LDD K KE I A KRG LL+GPPG GK++L Sbjct: 21 ASAQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTL 80 Query: 302 VAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 +A L NL + L LL ++ +L I++I Sbjct: 81 AHIIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEI 124
>RUVB_CHRVO (Q7NQC5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 345 Score = 38.5 bits (88), Expect = 0.016 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%) Frame = +2 Query: 140 ASFETLAMDPGLKQAVLDDLDRFLKRKEYYQR-IGKAWKRG-----YLLYGPPGTGKSSL 301 AS + A++ L+ +LD+ K +E + I A KRG LL+GPPG GK++L Sbjct: 22 ASEQEEALERALRPKLLDEYVGQKKAREQLEIFIEAAKKRGEALDHVLLFGPPGLGKTTL 81 Query: 302 VAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 +A + NL + L LL ++ +L I++I Sbjct: 82 AHIVAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEI 125
>FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.24.-) (FtsHCP)| Length = 603 Score = 38.5 bits (88), Expect = 0.016 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 8/141 (5%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK + +G + +G LL GPPGTGK+ L A+A + + S Sbjct: 166 LAEVVAFLKNPSKFLAVGASIPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVE 225 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG--- 523 V +S R L + ++ + ID D + R+ R GG Sbjct: 226 MFVGVGASRVRDLFKKAKQNAPCLVFID-EIDAVGRQ-------------RGAGIGGGND 271 Query: 524 ERKITLSGLLNFIDGLWSTSG 586 ER+ TL+ LL +DG +G Sbjct: 272 EREQTLNQLLTEMDGFEGNTG 292
>FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 637 Score = 38.5 bits (88), Expect = 0.016 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 5/138 (3%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FL+ +Q++G +G LL GPPGTGK+ L A+A + + S Sbjct: 167 LTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVE 226 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 V +S R + + ++ I ID D + R H G D ER+ Sbjct: 227 MFVGVGASRVRDMFEQGKRNAPCIIFID-EIDAVGR-----HRGIGMGGGND-----ERE 275 Query: 533 ITLSGLLNFIDGLWSTSG 586 TL+ +L +DG + G Sbjct: 276 QTLNQMLVEMDGFEANEG 293
>FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 637 Score = 38.5 bits (88), Expect = 0.016 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 5/138 (3%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FL+ +Q++G +G LL GPPGTGK+ L A+A + + S Sbjct: 167 LTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVE 226 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 V +S R + + ++ I ID D + R H G D ER+ Sbjct: 227 MFVGVGASRVRDMFEQGKRNAPCIIFID-EIDAVGR-----HRGIGMGGGND-----ERE 275 Query: 533 ITLSGLLNFIDGLWSTSG 586 TL+ +L +DG + G Sbjct: 276 QTLNQMLVEMDGFEANEG 293
>MSP1_CAEEL (P54815) Protein MSP1 homolog| Length = 342 Score = 38.5 bits (88), Expect = 0.016 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 11/117 (9%) Frame = +2 Query: 170 GLKQAVLDDLDRFLKRKEYYQRIGK---AWKRGYLLYGPPGTGKSSLVAAMANYLRFNLY 340 G ++ V + DR + + + G + RG LLYGPPG GK+ L A+A Sbjct: 87 GCEELVAELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFI 146 Query: 341 DLDLSSVHD-----NSSLQRLLIDMSNK---SILVIEDIDCSFDTMSREDRKDHSLE 487 +L +S++ D + L + ++ K +I+ I++ID SF DR+ H E Sbjct: 147 NLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEID-SF----LRDRQSHDHE 198
>RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes assembly protein| RCA1 (EC 3.4.24.-) (TAT-binding homolog 12) Length = 825 Score = 38.5 bits (88), Expect = 0.016 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = +2 Query: 206 FLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 FLK Y+++G RG +L GPPGTGK+ L A A Sbjct: 366 FLKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATA 402
>RUVB_STRT2 (Q5M2B1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN + NL ++ L +L D+ IL I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANEMGVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEI 112
>RUVB_STRT1 (Q5LXQ9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 333 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN + NL ++ L +L D+ IL I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANEMGVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEI 112
>RUVB_LACJO (P61533) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 339 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK++L +AN + +L ++ L LL +++ +L I++I Sbjct: 62 LLYGPPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEI 118
>PRS6A_YEAST (P33297) 26S protease regulatory subunit 6A (TAT-binding protein| homolog 1) (TBP-1) Length = 434 Score = 38.1 bits (87), Expect = 0.021 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 12/144 (8%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 +KR + ++ +G +G L+YGPPGTGK+ L A A +L+ L + + + Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260 Query: 374 SLQRLLIDMSNK---SILVIEDIDC----SFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 L R ++ + +I+ I+++D FD+ DR E + Sbjct: 261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR------------------EVQ 302 Query: 533 ITLSGLLNFIDGLWSTSGEERIMI 604 T+ LLN +DG S ++R+ + Sbjct: 303 RTMLELLNQLDGF---SSDDRVKV 323
>AFG2_YEAST (P32794) Protein AFG2| Length = 780 Score = 38.1 bits (87), Expect = 0.021 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDN--SSLQ 382 L + + G + RG LL+GPPGTGK+ L+ +AN ++ ++ S+ + Sbjct: 265 LHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETE 324 Query: 383 RLLIDMSNK------SILVIEDIDCSFDTMSRED 466 L D+ N+ SI+ I++ID + +D Sbjct: 325 AALRDIFNEARKYQPSIIFIDEIDSIAPNRANDD 358 Score = 35.8 bits (81), Expect = 0.10 Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 8/146 (5%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDL 352 LK + + + L+ E + R+G + +G LLYGPPG K+ A+A N + Sbjct: 524 LKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLTAKALATESGINFLAVKG 583 Query: 353 SSVHDN--SSLQRLLIDMSNK------SILVIEDIDCSFDTMSREDRKDHSLEDEDDGRD 508 + + +R + ++ K SI+ ++ID +L + DG Sbjct: 584 PEIFNKYVGESERAIREIFRKARSAAPSIIFFDEID--------------ALSPDRDGSS 629 Query: 509 YRTGGERKITLSGLLNFIDGLWSTSG 586 L+ LLN IDG+ G Sbjct: 630 TSAANH---VLTSLLNEIDGVEELKG 652
>RUVB_NEIMB (Q9JZ86) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 343 Score = 38.1 bits (87), Expect = 0.021 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 6/104 (5%) Frame = +2 Query: 140 ASFETLAMDPGLKQAVLDDLDRFLKRKEYYQR-IGKAWKRG-----YLLYGPPGTGKSSL 301 AS + ++ L+ LDD K KE I A KRG LL+GPPG GK++L Sbjct: 21 ASAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTL 80 Query: 302 VAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 +A L NL + L LL ++ +L I++I Sbjct: 81 AHIIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEI 124
>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)| Length = 809 Score = 38.1 bits (87), Expect = 0.021 Identities = 17/54 (31%), Positives = 32/54 (59%) Frame = +2 Query: 173 LKQAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFN 334 +K+ + + + ++ E +++ G + +G L YGPPG GK+ L A+AN + N Sbjct: 488 VKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 541 Score = 38.1 bits (87), Expect = 0.021 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMAN-----YLRFNLYDLDLSSVHDNS 373 L+ + ++ IG +G LLYGPPG+GK+ + A+AN + N ++ ++ Sbjct: 227 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESE 286 Query: 374 SLQRLLIDMSNK---SILVIEDID 436 S R + + K SI+ I++ID Sbjct: 287 SNLRKAFEEAEKNAPSIIFIDEID 310
>YME1_SCHMA (P46508) Protein YME1 homolog (EC 3.4.24.-)| Length = 662 Score = 38.1 bits (87), Expect = 0.021 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 L D+ FL+ E + +IG +G LL GPPG GK+ L A++ Sbjct: 178 LVDVVEFLRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVS 220
>RUVB_SYNAS (Q2LRA8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 340 Score = 38.1 bits (87), Expect = 0.021 Identities = 23/74 (31%), Positives = 36/74 (48%) Frame = +2 Query: 212 KRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLL 391 KRKE + LLYGPPG GK++L +A + FN+ + L +L Sbjct: 49 KRKEALDHV--------LLYGPPGLGKTTLALIIAREMGFNIKVTSGPVIERPGDLAAIL 100 Query: 392 IDMSNKSILVIEDI 433 ++ + IL I++I Sbjct: 101 TNLKDYDILFIDEI 114
>RUVB_STRMU (Q8DWI4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 344 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL ++ L +L D+ +L I++I Sbjct: 69 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEI 125
>RUVB_THIDN (Q30PX6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 337 Score = 37.7 bits (86), Expect = 0.027 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 L YGPPG GK++L +AN + N+ + + L +L ++ +L I++I Sbjct: 56 LFYGPPGLGKTTLALIIANEMNANIKVTAAPMIEKSGDLAAILTNLEEGDVLFIDEI 112
>RUVB_LACSS (Q38YQ9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 37.7 bits (86), Expect = 0.027 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK++L +AN L+ + ++ L LL ++ +L I++I Sbjct: 59 LLYGPPGLGKTTLAMVIANELQVQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEI 115
>TRP13_RAT (Q5XHZ9) Thyroid receptor-interacting protein 13 (Thyroid hormone| receptor interactor 13) (Trip-13) Length = 432 Score = 37.7 bits (86), Expect = 0.027 Identities = 17/30 (56%), Positives = 20/30 (66%) Frame = +2 Query: 248 WKRGYLLYGPPGTGKSSLVAAMANYLRFNL 337 W R LL+GPPGTGK+SL A+A L L Sbjct: 171 WNRVVLLHGPPGTGKTSLCKALAQKLTIRL 200
>TRP13_MOUSE (Q3UA06) Thyroid receptor-interacting protein 13 (Thyroid hormone| receptor interactor 13) (Trip-13) Length = 432 Score = 37.7 bits (86), Expect = 0.027 Identities = 17/30 (56%), Positives = 20/30 (66%) Frame = +2 Query: 248 WKRGYLLYGPPGTGKSSLVAAMANYLRFNL 337 W R LL+GPPGTGK+SL A+A L L Sbjct: 171 WNRVVLLHGPPGTGKTSLCKALAQKLTIRL 200
>TRP13_HUMAN (Q15645) Thyroid receptor-interacting protein 13 (Thyroid hormone| receptor interactor 13) (Trip-13) (Human papillomavirus type 16 E1 protein-binding protein) (HPV16 E1 protein-binding protein) (16E1-BP) Length = 432 Score = 37.7 bits (86), Expect = 0.027 Identities = 17/30 (56%), Positives = 20/30 (66%) Frame = +2 Query: 248 WKRGYLLYGPPGTGKSSLVAAMANYLRFNL 337 W R LL+GPPGTGK+SL A+A L L Sbjct: 171 WNRVVLLHGPPGTGKTSLCKALAQKLTIRL 200
>ATD1B_BRARE (Q503W7) ATPase family AAA domain-containing protein 1-B| Length = 362 Score = 37.7 bits (86), Expect = 0.027 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Frame = +2 Query: 254 RGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHD-----NSSLQRLLIDMSNK--- 409 +G LLYGPPG GK+ + A A F +L S++ D + L + ++ K Sbjct: 131 KGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQP 190 Query: 410 SILVIEDIDCSFDTMSREDRK 472 SI+ I++ID S D + Sbjct: 191 SIIFIDEIDSFLRNRSSSDHE 211
>FTSH_MYCPU (Q98PE4) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 725 Score = 37.7 bits (86), Expect = 0.027 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS 358 + +L +LK + Y G + +G LL GPPGTGK+ L A A + + SS Sbjct: 224 VQELVDYLKNPKKYAAAGARFPKGILLGGPPGTGKTLLAKATAGEANVPFFFISASS 280
>YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)| (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin-associated metalloprotease) (PAMP) Length = 773 Score = 37.7 bits (86), Expect = 0.027 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 L ++ FLK + + +G +G LL GPPGTGK+ L A+A Sbjct: 351 LQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVA 393
>PRS6A_SCHPO (O14126) 26S protease regulatory subunit 6A| Length = 438 Score = 37.7 bits (86), Expect = 0.027 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 12/144 (8%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 +++ + ++++G +G L++GPPGTGK+ L A A +L+ L + D + Sbjct: 205 MQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGA 264 Query: 374 SLQR---LLIDMSNKSILVIEDIDC----SFDTMSREDRKDHSLEDEDDGRDYRTGGERK 532 L R L + +I+ I+++D FD+ DR E + Sbjct: 265 KLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDR------------------EVQ 306 Query: 533 ITLSGLLNFIDGLWSTSGEERIMI 604 T+ LLN +DG S ++R+ + Sbjct: 307 RTMLELLNQLDGF---SSDDRVKV 327
>YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)| (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) Length = 715 Score = 37.7 bits (86), Expect = 0.027 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 L ++ FLK + + +G +G LL GPPGTGK+ L A+A Sbjct: 293 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 335
>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)| (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) Length = 715 Score = 37.7 bits (86), Expect = 0.027 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMA 316 L ++ FLK + + +G +G LL GPPGTGK+ L A+A Sbjct: 293 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 335
>MDN1_GIALA (Q8T5T1) Midasin (MIDAS-containing protein)| Length = 4835 Score = 37.7 bits (86), Expect = 0.027 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%) Frame = +2 Query: 233 RIGKA--WKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSL 379 RI KA ++R LL G PG GKS+LV+A+A ++L ++LS D S L Sbjct: 1498 RIAKALRFQRPILLEGDPGVGKSALVSAIAEICGYSLVRINLSEQTDLSDL 1548
>RUVB_STRPM (Q48VY1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 37.7 bits (86), Expect = 0.027 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL +V L +L ++ IL I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEI 112
>RUVB_STRP8 (Q8P302) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 37.7 bits (86), Expect = 0.027 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL +V L +L ++ IL I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEI 112
>RUVB_STRP6 (Q5XEE4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 37.7 bits (86), Expect = 0.027 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL +V L +L ++ IL I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEI 112
>RUVB_STRP3 (Q8K8X8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 37.7 bits (86), Expect = 0.027 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL +V L +L ++ IL I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEI 112
>RUVB_STRP1 (Q9A1Y1) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 37.7 bits (86), Expect = 0.027 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL +V L +L ++ IL I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEI 112
>RUVB_THETN (Q8RAN2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 37.7 bits (86), Expect = 0.027 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Frame = +2 Query: 236 IGKAWKRG-----YLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDM 400 I A KRG LLYGPPG GK++L ++N + + ++ + L +L ++ Sbjct: 42 IEAAKKRGEPLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNL 101 Query: 401 SNKSILVIEDI 433 IL I++I Sbjct: 102 QENDILFIDEI 112
>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 409 Score = 37.4 bits (85), Expect = 0.035 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 8/84 (9%) Frame = +2 Query: 209 LKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAM-----ANYLRFNLYDLDLSSVHDNS 373 +K ++ +G +G LL+GPPGTGK+ L A+ A ++R +L + + + Sbjct: 159 IKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGA 218 Query: 374 SLQRLLIDMSNK---SILVIEDID 436 L R + ++ + SIL I++ID Sbjct: 219 RLVREIFRLAREKAPSILFIDEID 242
>RUVB_STAS1 (Q49Y79) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 37.4 bits (85), Expect = 0.035 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +2 Query: 128 HHHPASFETLAMDPGLKQ-----AVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGK 292 H +SFE L+Q + +L+ F+K + Q LL+GPPG GK Sbjct: 11 HDEESSFELSLRPTKLRQYIGQSTIKSNLEVFIKAAKMRQEP----LDHVLLFGPPGLGK 66 Query: 293 SSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 ++L +AN + N+ + S+ L +L + +L I++I Sbjct: 67 TTLSNIIANEMEVNIRIISGPSIERPGDLAAILSSLQPGDVLFIDEI 113
>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 37.4 bits (85), Expect = 0.035 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK+++ +AN + N+ ++ L +L ++ +L I++I Sbjct: 59 LLYGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEI 115
>RUVB_MOOTA (Q2RHT7) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 336 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK++L +AN L L ++ L +L ++ + +L I++I Sbjct: 58 LLYGPPGLGKTTLAGIIANELGVQLRVTSGPALERAGDLAAILTNLQPRDVLFIDEI 114
>RUVB_NITOC (Q3JES3) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 348 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 L++GPPG GK++L +AN L NL + L LL ++ + +L I++I Sbjct: 59 LIFGPPGLGKTTLSHIIANELEVNLRQTSGPVLERPGDLAALLTNLEPRDVLFIDEI 115
>PRS2_METTM (P42811) Putative 26S protease regulatory subunit homolog MTH1011| Length = 372 Score = 37.4 bits (85), Expect = 0.035 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 9/92 (9%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWK-RGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS-- 358 L+D DRF + W R L +G PGTGK+ L ++AN LR LY + +S Sbjct: 146 LEDPDRF-----------RDWAPRNVLFHGSPGTGKTMLAKSLANELRVPLYLIKATSLI 194 Query: 359 ---VHDNSSLQRLLIDMSNK---SILVIEDID 436 V D + L ++++K S++ I+++D Sbjct: 195 GEHVGDGARQIHELYELASKTAPSVIFIDEMD 226
>FTSH1_HAEIN (P71377) Cell division protein ftsH homolog 1 (EC 3.4.24.-)| Length = 635 Score = 37.4 bits (85), Expect = 0.035 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 8/135 (5%) Frame = +2 Query: 206 FLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS-----VHDN 370 FL+ +Q +G +G L+ GPPGTGK+ L A+A + + + S V Sbjct: 169 FLRDPNKFQNLGGKIPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVG 228 Query: 371 SSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG---ERKITL 541 +S R + + + K+ + ID D + R+ R GG ER+ TL Sbjct: 229 ASRVRDMFEQAKKNAPCLIFID-EIDAVGRQ-------------RGAGLGGGHDEREQTL 274 Query: 542 SGLLNFIDGLWSTSG 586 + +L +DG G Sbjct: 275 NQMLVEMDGFSGNDG 289
>RUVB_STAHJ (Q4L6Y6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 331 Score = 37.4 bits (85), Expect = 0.035 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 9/111 (8%) Frame = +2 Query: 128 HHHPASFETLAMDPGLKQ-----AVLDDLDRFLK----RKEYYQRIGKAWKRGYLLYGPP 280 H SFE LKQ ++ ++L+ F+K R+E + LL+GPP Sbjct: 11 HSEETSFELSLRPTMLKQYIGQSSIKNNLEVFIKAAKLREEPLDHV--------LLFGPP 62 Query: 281 GTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 G GK++L +AN + N+ + S+ L +L + +L I++I Sbjct: 63 GLGKTTLSNIIANEMNVNIRTVSGPSLDRPGDLAAILSGLQPGDVLFIDEI 113
>RUVB_EHRCJ (Q3YRD9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 329 Score = 37.4 bits (85), Expect = 0.035 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK++L +A L+ N + L +L ++ K IL I++I Sbjct: 55 LLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEI 111
>RUVB_CARHZ (Q3ABY0) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 339 Score = 37.4 bits (85), Expect = 0.035 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK++L +AN L ++ ++ L +L ++ K +L I++I Sbjct: 56 LLFGPPGLGKTTLATIIANELGVDIKITSGPALERPGDLAAILTNLGEKDVLFIDEI 112
>RUVB_STRPN (Q97SR6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 332 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/57 (33%), Positives = 30/57 (52%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LL+GPPG GK+++ +AN L NL + L +L D+ +L I++I Sbjct: 56 LLFGPPGLGKTTMAFVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEI 112
>Y1316_MYCLE (P46509) Putative AAA-family ATPase ML1316| Length = 609 Score = 37.0 bits (84), Expect = 0.046 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 179 QAVLDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYL 325 + + D ++ KE Y+ +G LLYGPPG GK+ + A+AN L Sbjct: 262 EQIRDAVELPFLHKELYREYALRPPKGVLLYGPPGCGKTLIAKAVANSL 310
>FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 637 Score = 37.0 bits (84), Expect = 0.046 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Frame = +2 Query: 188 LDDLDRFLKRKEYYQRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSS--- 358 L ++ FLK + +G +G LL GPPGTGK+ L A A + + S Sbjct: 173 LVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVE 232 Query: 359 --VHDNSSLQRLLIDMSNKSILVIEDIDCSFDTMSREDRKDHSLEDEDDGRDYRTGG--- 523 V +S R L + + K+ + ID D + R+ R GG Sbjct: 233 MFVGVGASRVRDLFENAKKNAPCLIFID-EIDAVGRQ-------------RGAGLGGGHD 278 Query: 524 ERKITLSGLLNFIDGLWSTSG 586 ER+ TL+ LL +DG + G Sbjct: 279 EREQTLNQLLVEMDGFSANEG 299
>RUVB_CLOPE (Q8XJ14) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 346 Score = 37.0 bits (84), Expect = 0.046 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 +LYGPPG GK++L +AN + NL ++ L +L ++ +L I++I Sbjct: 57 ILYGPPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEI 113
>RFCL_PYRFU (Q9UWR2) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (PfuRFC large subunit) Length = 479 Score = 37.0 bits (84), Expect = 0.046 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +2 Query: 251 KRGYLLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQR 385 K+ LL GPPG+GK++ V A+AN F + +L+ S + R Sbjct: 43 KKALLLAGPPGSGKTTTVYALANEYNFEVIELNASDERTYEKISR 87
>RUVB_VIBPA (Q87QU7) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 36.6 bits (83), Expect = 0.060 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 L++GPPG GK++L +AN + N+ + L LL ++ +L I++I Sbjct: 61 LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEI 117
>RUVB_SHEON (Q8EEF3) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 334 Score = 36.6 bits (83), Expect = 0.060 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 L+YGPPG GK++L +AN + N+ + L LL ++ +L I++I Sbjct: 59 LIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEI 115
>RUVB_CLOTE (Q891Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 345 Score = 36.6 bits (83), Expect = 0.060 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 LLYGPPG GK++L +A ++ NL ++ L +L ++ +L I++I Sbjct: 60 LLYGPPGLGKTTLANIIAKEMKGNLKITSGPAIERAGDLAAILTTLNEHDVLFIDEI 116
>RUVB_PSEHT (Q3IIJ2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 36.6 bits (83), Expect = 0.060 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 263 LLYGPPGTGKSSLVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 L++GPPG GK++L +AN L+ N+ + L LL ++ +L I++I Sbjct: 59 LIFGPPGLGKTTLANIVANELQVNIKATSGPVLEKAGDLAALLTNLEEGDVLFIDEI 115
>RUVB_BURTA (Q2SZ55) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 36.6 bits (83), Expect = 0.060 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRG------YLLYGPPGTGKSS 298 PAS A + L+ LD+ K ++ + +A KR LL+GPPG GK++ Sbjct: 17 PASSHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGPPGLGKTT 76 Query: 299 LVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 L +A + NL + L LL ++ +L I++I Sbjct: 77 LAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEI 121
>RUVB_BURPS (Q63QX5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 36.6 bits (83), Expect = 0.060 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRG------YLLYGPPGTGKSS 298 PAS A + L+ LD+ K ++ + +A KR LL+GPPG GK++ Sbjct: 17 PASSHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTT 76 Query: 299 LVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 L +A + NL + L LL ++ +L I++I Sbjct: 77 LAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEI 121
>RUVB_BURP1 (Q3JNS5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 356 Score = 36.6 bits (83), Expect = 0.060 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Frame = +2 Query: 137 PASFETLAMDPGLKQAVLDDLDRFLKRKEYYQRIGKAWKRG------YLLYGPPGTGKSS 298 PAS A + L+ LD+ K ++ + +A KR LL+GPPG GK++ Sbjct: 17 PASSHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTT 76 Query: 299 LVAAMANYLRFNLYDLDLSSVHDNSSLQRLLIDMSNKSILVIEDI 433 L +A + NL + L LL ++ +L I++I Sbjct: 77 LAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEI 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,497,883 Number of Sequences: 219361 Number of extensions: 1347504 Number of successful extensions: 8377 Number of sequences better than 10.0: 500 Number of HSP's better than 10.0 without gapping: 7860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8352 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
