ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9a02 |
|---|---|
| Clone Library Name | barley_pub |
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 58.5 bits (140), Expect = 1e-08 Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAAL 544 D R++YVGN+ +VTE L++++F GP + CK+I + S+ + FV++Y+ R AA Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63 Query: 545 AIMTLHGRHIYG 580 A+ ++GR I G Sbjct: 64 ALAAMNGRKILG 75
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 53.1 bits (126), Expect = 6e-07 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 19/89 (21%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI------RKEKSSFG-------- 508 D R++YVGN+ +VTE L++++F GP + CK+I R+ SS G Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 509 -----FVDYYDRRSAALAIMTLHGRHIYG 580 FV++Y+ R AA A+ ++GR I G Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILG 92
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 52.8 bits (125), Expect = 7e-07 Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 2/67 (2%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAALAIMTL 559 +++YVGN+ +VTE L++++F GP + CK+I + + FV++++ R AA A+ + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 560 HGRHIYG 580 +GR I G Sbjct: 67 NGRKIMG 73
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 52.8 bits (125), Expect = 7e-07 Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 2/67 (2%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAALAIMTL 559 +++YVGN+ +VTE L++++F GP + CK+I + + FV++++ R AA A+ + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 560 HGRHIYG 580 +GR I G Sbjct: 67 NGRKIMG 73
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI---RKEKSSFGFVDYYDRRSAALAIMT 556 R +YVGN+ +TE++L + FQ GP+ K++ + ++ FV+Y+ A +A+ T Sbjct: 74 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 133 Query: 557 LHGRHI 574 L+G+ I Sbjct: 134 LNGKQI 139
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVER---CKLIRKEKSSFGFVDYYDRRSAALAIMT 556 R+V+VGN+ V E +L E+F +GP+ + CK + SFGFV + S + AI Sbjct: 10 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 69 Query: 557 LHGRHIYG 580 L+G +YG Sbjct: 70 LNGIRLYG 77
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 541 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 542 LAIMTLHGRHIYG 580 A++ LHG+ I G Sbjct: 254 KAVLDLHGKSIDG 266 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 557 LH 562 ++ Sbjct: 79 MN 80
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 541 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 542 LAIMTLHGRHIYG 580 A++ LHG+ I G Sbjct: 254 KAVLDLHGKSIDG 266 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 557 LH 562 ++ Sbjct: 79 MN 80
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 541 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 542 LAIMTLHGRHIYG 580 A++ LHG+ I G Sbjct: 254 KAVLDLHGKSIDG 266 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 557 LH 562 ++ Sbjct: 79 MN 80
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 541 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 542 LAIMTLHGRHIYG 580 A++ LHG+ I G Sbjct: 254 KAVLDLHGKSIDG 266 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 557 LH 562 ++ Sbjct: 79 MN 80
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 541 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 542 LAIMTLHGRHIYG 580 A++ LHG+ I G Sbjct: 254 KAVLDLHGKSIDG 266 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 557 LH 562 ++ Sbjct: 79 MN 80
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 541 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 542 LAIMTLHGRHIYG 580 A++ LHG+ I G Sbjct: 254 KAVLDLHGKSIDG 266 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 557 LH 562 ++ Sbjct: 79 MN 80
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 45.8 bits (107), Expect = 9e-05 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDR 529 P D S RSV+VGN+ TE L ++F GPV +L+ ++ +GF +Y D+ Sbjct: 9 PAVDRSL-RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 530 RSAALAIMTLHGRHIYG 580 +A A+ L+GR G Sbjct: 68 ETALSAMRNLNGREFSG 84
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 45.8 bits (107), Expect = 9e-05 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDR 529 P D S RSV+VGN+ TE L ++F GPV +L+ ++ +GF +Y D+ Sbjct: 9 PAVDRSL-RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 530 RSAALAIMTLHGRHIYG 580 +A A+ L+GR G Sbjct: 68 ETALSAMRNLNGREFSG 84
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 9e-05 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDR 529 P D S RSV+VGN+ TE L ++F GPV +L+ ++ +GF +Y D+ Sbjct: 9 PAVDRSL-RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 530 RSAALAIMTLHGRHIYG 580 +A A+ L+GR G Sbjct: 68 ETALSAMRNLNGREFSG 84
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 9e-05 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDR 529 P D S RSV+VGN+ TE L ++F GPV +L+ ++ +GF +Y D+ Sbjct: 9 PAVDRSL-RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 530 RSAALAIMTLHGRHIYG 580 +A A+ L+GR G Sbjct: 68 ETALSAMRNLNGREFSG 84
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK----SSFGFVDYYDRRSAALAIM 553 R+++VGN+ VTE LL E+F +GPV + K I K+K F FV++ S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVK-IPKDKDGKPKQFAFVNFKHEVSVPYAMN 68 Query: 554 TLHGRHIYG 580 L+G +YG Sbjct: 69 LLNGIKLYG 77
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK----SSFGFVDYYDRRSAALAIM 553 R+++VGN+ VTE LL E+F +GPV + K I K+K F FV++ S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVK-IPKDKDGKPKQFAFVNFKHEVSVPYAMN 68 Query: 554 TLHGRHIYG 580 L+G ++G Sbjct: 69 LLNGIKLFG 77
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK----SSFGFVDYYDRRSAALAIM 553 R+++VGN+ VTE LL E+F +GPV + K I K+K F FV++ S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVK-IPKDKDGKLKQFAFVNFKHEVSVPYAMN 68 Query: 554 TLHGRHIYG 580 L+G ++G Sbjct: 69 LLNGIKLFG 77
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDR 529 P D S RSV+VGN+ TE L ++F G V +L+ ++ +GF +Y D+ Sbjct: 9 PAMDRSL-RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 530 RSAALAIMTLHGRHIYG 580 +A A+ L+GR G Sbjct: 68 ETALSAMRNLNGREFSG 84
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDR 529 P D S RSV+VGN+ TE L ++F G V +L+ ++ +GF +Y D+ Sbjct: 9 PAMDRSL-RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 530 RSAALAIMTLHGRHIYG 580 +A A+ L+GR G Sbjct: 68 ETALSAMRNLNGREFSG 84
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Frame = +2 Query: 338 PVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSF 505 PV +GN D T ++ V + N+T+ L +F G +E CKL+R + + Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 506 GFVDYYDRRSAALAIMTLHG 565 GFV+Y D + A AI TL+G Sbjct: 83 GFVNYIDPKDAEKAINTLNG 102
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Frame = +2 Query: 338 PVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSF 505 PV +GN D T ++ V + N+T+ L +F G +E CKL+R + + Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 506 GFVDYYDRRSAALAIMTLHG 565 GFV+Y D + A AI TL+G Sbjct: 83 GFVNYIDPKDAEKAINTLNG 102
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Frame = +2 Query: 338 PVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSF 505 PV +GN D T ++ V + N+T+ L +F G +E CKL+R + + Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 506 GFVDYYDRRSAALAIMTLHG 565 GFV+Y D + A AI TL+G Sbjct: 83 GFVNYIDPKDAEKAINTLNG 102
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++HP+VTE +L E F +GP+ + LI S++ +V++ + A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71 Query: 557 LH 562 ++ Sbjct: 72 MN 73
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 V+VGN+ +V+E + E+F GPV+ KL+ ++ +GF +++D + A+A+ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 560 HGRHI 574 + + Sbjct: 69 NNSEL 73
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 S+Y+G++HP+VTE +L E F +GP+ ++ R + S+ ++++ A A+ T Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71 Query: 557 LHGRHIYG 580 ++ I G Sbjct: 72 MNFEVIKG 79 Score = 38.1 bits (87), Expect = 0.019 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRS 535 PG S +V++ N+ ++ L + F G + CK++ E S +GFV + + Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150 Query: 536 AALAIMTLHG 565 A AI T++G Sbjct: 151 ANRAIQTMNG 160 Score = 32.7 bits (73), Expect = 0.78 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 559 +VY+ N ++ + L E+F G K++ + FGFV+Y + A A+ + Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 560 HGRHIYG 580 +G+ + G Sbjct: 252 NGKEVNG 258
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%) Frame = +2 Query: 338 PVSNGNLPPGFDPSTCRSVYVGNVHP-NVTENLLIEVFQGSGPVERCKLIRK----EKSS 502 PV +GN ++ + N P N+T+ L +F G +E CKL+R + Sbjct: 28 PVDSGNTEDS------KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 503 FGFVDYYDRRSAALAIMTLHG 565 +GFV+Y D + A AI TL+G Sbjct: 82 YGFVNYIDPKDAEKAINTLNG 102
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 556 ++YVGN+ TE + E+F SG V+R + ++K F FV+YY R A A+ Sbjct: 33 TLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGTAMRF 92 Query: 557 LHGRHI 574 ++G + Sbjct: 93 INGTRL 98
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 +YVG++H N+TE++L +F+ G +E +L+ ++ +GF+ + D A A+ L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 560 HGRHIYG 580 +G + G Sbjct: 312 NGFELAG 318
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 +YVG++H N+TE++L +F+ G +E +L+ ++ +GF+ + D A A+ L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 560 HGRHIYG 580 +G + G Sbjct: 312 NGFELAG 318
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 40.0 bits (92), Expect = 0.005 Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMTL 559 +YV ++HP+++E + VF+ GP+ CKL + +GF++Y ++++ AI ++ Sbjct: 229 IYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASM 288 Query: 560 H 562 + Sbjct: 289 N 289 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAI 550 CR VYVG++ + E+ + F GP++ + I ++ F FV+Y A LA+ Sbjct: 130 CR-VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLAL 188 Query: 551 MTLHG 565 ++G Sbjct: 189 EQMNG 193
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++HP+VTE +L E F +GP+ ++ R + + ++++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 557 LHGRHIYG 580 ++ I G Sbjct: 72 MNFEVIKG 79 Score = 38.5 bits (88), Expect = 0.014 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRS 535 PG S +V++ N+ ++ L + F G + CK++ E S +GFV + + + Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150 Query: 536 AALAIMTLHG 565 A AI T++G Sbjct: 151 ANRAIQTMNG 160 Score = 32.3 bits (72), Expect = 1.0 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 559 +VY+ N ++ + L E+F G K++ + FGFV+Y + A A+ + Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 560 HGRHIYG 580 +G+ + G Sbjct: 252 NGKEVNG 258
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 39.7 bits (91), Expect = 0.006 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 S+Y+G++HP+VTE +L E F +GP+ ++ R + + ++++ A A+ T Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 557 LHGRHIYG 580 ++ I G Sbjct: 72 MNFEVIKG 79 Score = 38.5 bits (88), Expect = 0.014 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRS 535 PG S +V++ N+ ++ L + F G + CK++ E S +GFV + + + Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150 Query: 536 AALAIMTLHG 565 A AI T++G Sbjct: 151 ANRAIQTMNG 160 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 559 +VY+ N ++ + L E+F G K++ FGFV+Y + A A+ + Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 560 HGRHIYG 580 +G+ + G Sbjct: 252 NGKEVNG 258
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 39.7 bits (91), Expect = 0.006 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +2 Query: 350 GNLPPGF---DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGF 511 G PPG+ P + VY+G + +V E+ LI +FQ G + +L+ F + Sbjct: 43 GGPPPGWVGSPPPSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAY 102 Query: 512 VDYYDRRSAALAIMTLHGRHI 574 Y RR A AI TLH + Sbjct: 103 ARYSSRRGAQAAIATLHNHQL 123
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/68 (36%), Positives = 33/68 (48%) Frame = +2 Query: 359 PPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 538 P G P T S+YVG + P+VTE +L E+F GPV ++ R D RRS Sbjct: 72 PSGTAP-TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCR---------DAVTRRSL 121 Query: 539 ALAIMTLH 562 A + H Sbjct: 122 GYAYVNFH 129 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 559 +VY+ N+ +TE ++F G + L++ + FGFV+Y + A A+ L Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321 Query: 560 HGRHIYG 580 + + G Sbjct: 322 NDKEYKG 328
>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 610 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +2 Query: 347 NGNLPPGFD---PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF 505 N NLPP P C++V+VG + N TE +++EVF+ G + IRK K +F Sbjct: 112 NPNLPPPATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEI---IAIRKSKKNF 164
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMTL 559 +YVG++H N+TE++L +F+ G ++ L++ +GF+ + D A A+ L Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 560 HGRHIYG 580 +G + G Sbjct: 325 NGFELAG 331
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 557 LH 562 ++ Sbjct: 72 MN 73
>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 598 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +2 Query: 347 NGNLPPGFD---PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF 505 N NLPP P C++V+VG + N TE +++EVF+ G + IRK K +F Sbjct: 83 NPNLPPPATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEI---IAIRKSKKNF 135
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 557 LH 562 ++ Sbjct: 72 MN 73 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE---KSSFGFVDYYDRRSAALAIMTL 559 +VY+ N ++ + L E+F GP K++ E FGFV + A A+ + Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 560 HGRHIYG 580 +G+ + G Sbjct: 252 NGKELNG 258
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 557 LH 562 ++ Sbjct: 72 MN 73 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE---KSSFGFVDYYDRRSAALAIMTL 559 +VY+ N ++ + L E+F GP K++ E FGFV + A A+ + Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 560 HGRHIYG 580 +G+ + G Sbjct: 252 NGKELNG 258
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 557 LH 562 ++ Sbjct: 72 MN 73
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 557 LH 562 ++ Sbjct: 72 MN 73
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 556 ++ V + N+T+ +F G +E CKL+R + +GFV+Y D + A AI T Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 557 LHG 565 L+G Sbjct: 100 LNG 102
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 556 ++ V + N+T+ +F G +E CKL+R + +GFV+Y D + A AI T Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106 Query: 557 LHG 565 L+G Sbjct: 107 LNG 109
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 556 ++ V + N+T+ +F G +E CKL+R + +GFV+Y D + A AI T Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111 Query: 557 LHG 565 L+G Sbjct: 112 LNG 114
>DND1_XENLA (Q6DCB7) Dead end protein homolog 1| Length = 371 Score = 38.9 bits (89), Expect = 0.011 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Frame = +2 Query: 350 GNLPPGF---DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGF 511 G PPG+ P + V++G + ++ E+ LI +FQ G + +L+ F + Sbjct: 62 GGPPPGWIGNAPVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMTFSGLNRGFAY 121 Query: 512 VDYYDRRSAALAIMTLHGRHI 574 Y RR A AIM+L+G I Sbjct: 122 ARYISRRQAISAIMSLNGFEI 142
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 38.5 bits (88), Expect = 0.014 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 ++VG + P T +++ F+G G + CKL+ + FGFV+ D R A + G+ Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM----NGFGFVEVEDARDARDIVNDFQGKE 61 Query: 572 IYG 580 G Sbjct: 62 FMG 64
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 38.5 bits (88), Expect = 0.014 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK---SSFGFVDYYDRRSAALAIMTL 559 ++YV NV+ VTE L + F G + KL+ EK FGFV + A A+ T Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 560 HGRHIYG 580 HG+ +G Sbjct: 365 HGQMFHG 371 Score = 37.7 bits (86), Expect = 0.024 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAI 550 S+YVG++HP+VTE +L + F + +L + S +G+ ++ R+ A LAI Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
>WHI3_YEAST (P34761) Protein WHI3| Length = 661 Score = 38.5 bits (88), Expect = 0.014 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 11/84 (13%) Frame = +2 Query: 356 LPPGFDPST----CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFG----- 508 +PP +P+ C ++YVGN+ + TE L ++F G R K +S G Sbjct: 524 IPPPANPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGP 583 Query: 509 --FVDYYDRRSAALAIMTLHGRHI 574 FV++ D A A+ L+GR + Sbjct: 584 MCFVEFDDVSFATRALAELYGRQL 607
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 38.5 bits (88), Expect = 0.014 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +Y+G + V+E + F+G G + L K+ FGFV++ D+R A A+ L+G+ Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL----KNGFGFVEFDDKRDAEDAVHDLNGKE 60 Query: 572 IYG 580 + G Sbjct: 61 LGG 63
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 38.1 bits (87), Expect = 0.019 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 556 +VYVGN+ P +T+ L E+F PV R K + + + F+++Y++ A AI Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69 Query: 557 LH 562 ++ Sbjct: 70 MN 71
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 37.7 bits (86), Expect = 0.024 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 556 ++YVGN+ TE + E+F SG +++ + ++K F FV+YY R A A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 557 LHGRHI 574 ++G + Sbjct: 101 INGTRL 106
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 37.7 bits (86), Expect = 0.024 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 556 ++YVGN+ TE + E+F SG +++ + ++K F FV+YY R A A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 557 LHGRHI 574 ++G + Sbjct: 101 INGTRL 106
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 37.7 bits (86), Expect = 0.024 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 556 ++YVGN+ TE + E+F SG +++ + ++K F FV+YY R A A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 557 LHGRHI 574 ++G + Sbjct: 101 INGTRL 106
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 37.7 bits (86), Expect = 0.024 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 556 ++ V + N+T++ +F G +E CKL+R + +GFV+Y D A AI T Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 557 LHG 565 L+G Sbjct: 100 LNG 102
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 37.7 bits (86), Expect = 0.024 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 556 ++ V + N+T++ +F G +E CKL+R + +GFV+Y D A AI T Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 557 LHG 565 L+G Sbjct: 100 LNG 102
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 37.4 bits (85), Expect = 0.032 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 556 +VYVG + V+E LL E+F +GPV + + + +GFV++ A AI Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73 Query: 557 LHGRHIYG 580 ++ +YG Sbjct: 74 MNMIKLYG 81
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 37.0 bits (84), Expect = 0.041 Identities = 21/63 (33%), Positives = 33/63 (52%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 VY+G + NV E + F G G + L K+ +GFV++ D R A A+ L+G+ Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDL----KNGYGFVEFEDSRDADDAVYELNGKE 59 Query: 572 IYG 580 + G Sbjct: 60 LCG 62
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 37.0 bits (84), Expect = 0.041 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS-------FGFVDYYDRRSAALA 547 ++++ N++ + TE L EVF G V+ C + +K+ + FGFV+Y A A Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790 Query: 548 IMTLHGRHIYG 580 + L G + G Sbjct: 791 LKQLQGHVVDG 801
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 37.0 bits (84), Expect = 0.041 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Frame = +2 Query: 350 GNLPPGF---DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGF 511 G PPG+ P V++G + +V E+ LI +FQ G + +L+ F + Sbjct: 43 GGPPPGWVGSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAY 102 Query: 512 VDYYDRRSAALAIMTLH 562 Y RR A AI TLH Sbjct: 103 ARYSSRRGAQAAIATLH 119
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 37.0 bits (84), Expect = 0.041 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLH 562 ++VGN+ PN T + +F G + C +++ +FGFV + A AI LH Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVK----NFGFVHMDSKSEADEAIQNLH 56 Score = 29.3 bits (64), Expect = 8.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +2 Query: 374 PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR 487 P T ++VGN+ + T L F+ GPV C +++ Sbjct: 74 PKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVK 111
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 36.6 bits (83), Expect = 0.054 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++H +VTE +L E F +GPV + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 557 LH 562 ++ Sbjct: 72 MN 73
>PRGC1_HUMAN (Q9UBK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) (Ligand effect modulator 6) Length = 798 Score = 36.6 bits (83), Expect = 0.054 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 520 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 677 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 722
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 36.6 bits (83), Expect = 0.054 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++ NVT++ L + F G V + L+ + +G+V++ + + AA AI Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 557 LHGRHIYG 580 L+ +YG Sbjct: 97 LNYIPLYG 104 Score = 33.9 bits (76), Expect = 0.35 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Frame = +2 Query: 353 NLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS---FGFVDYY 523 NL D ++YV N+ P++++ L E+F G V K++R + GFV + Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366 Query: 524 DRRSAALAIMTLHGRHI 574 A A+ L G+ I Sbjct: 367 TPEEATEAMSQLSGKMI 383
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 36.6 bits (83), Expect = 0.054 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMT 556 ++ V + N+T+ L +F G VE KLIR + + +GFV+Y + A AI T Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80 Query: 557 LHG 565 L+G Sbjct: 81 LNG 83
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 36.6 bits (83), Expect = 0.054 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMT 556 ++ V + N+T++ L +F G VE KLIR + + +GFV+Y + A AI T Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 Query: 557 LHG 565 L+G Sbjct: 81 LNG 83
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 36.6 bits (83), Expect = 0.054 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 +Y+GN++ +TE ++ VF G L R E + F ++ Y D+RS LA+ L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 560 HGRHIYG 580 +G I G Sbjct: 93 NGFKIGG 99
>PRGC1_RAT (Q9QYK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 36.6 bits (83), Expect = 0.054 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 520 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 675 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 720
>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 36.6 bits (83), Expect = 0.054 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 520 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 675 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 720
>PRGC1_MOUSE (O70343) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 797 Score = 36.6 bits (83), Expect = 0.054 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 520 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 676 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 721
>PRGC1_BOVIN (Q865B7) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 36.6 bits (83), Expect = 0.054 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 520 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 675 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 720
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 36.2 bits (82), Expect = 0.070 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 ++VG + +TE +I VF G + L+R +K+ F F+ Y D+RS LA+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 560 HGRHIYG 580 +G I G Sbjct: 98 NGIKIKG 104
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 36.2 bits (82), Expect = 0.070 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Frame = +2 Query: 398 VGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTLHG 565 V N+ P++T+ E+ + G +ERC L+ E++ +GF +Y + SAA A L G Sbjct: 136 VANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 195 Query: 566 R 568 + Sbjct: 196 K 196
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 36.2 bits (82), Expect = 0.070 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 559 ++Y+ N+ +V + L E+F G V CK++ + FGFV Y + A LA+ + Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388 Query: 560 HGRHI 574 +G+ I Sbjct: 389 NGKMI 393 Score = 33.1 bits (74), Expect = 0.60 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVER---CKLIRKEKSSFGFVDYYDRRSAALAIMTL 559 S+YVG++ P+V E+ L+++F PV C+ + + +V++ + A+ A+ +L Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105 Query: 560 H 562 + Sbjct: 106 N 106
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 36.2 bits (82), Expect = 0.070 Identities = 22/63 (34%), Positives = 31/63 (49%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 VYVG + + T L E+F G + + + R+ F FV+Y D R A A+ L G Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG-FAFVEYDDVRDAEDAVRALDGSR 63 Query: 572 IYG 580 I G Sbjct: 64 ICG 66
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 36.2 bits (82), Expect = 0.070 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++H +VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 557 LH 562 ++ Sbjct: 72 MN 73
>YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C| Length = 612 Score = 36.2 bits (82), Expect = 0.070 Identities = 23/67 (34%), Positives = 38/67 (56%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYY 523 + N P F + R+VY+GNV PN++ L++ + SG VE K+I ++ + FV + Sbjct: 187 AQANNPLNFTSAPSRTVYLGNVPPNLSVKELLDHVR-SGVVEDVKIIPEKMCA--FVSFI 243 Query: 524 DRRSAAL 544 D +A L Sbjct: 244 DESAALL 250
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 36.2 bits (82), Expect = 0.070 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 556 ++YVG + V+E++L E+ +GPV + + FGFV++ A AI Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73 Query: 557 LHGRHIYG 580 L+ +YG Sbjct: 74 LNMIKLYG 81
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 35.8 bits (81), Expect = 0.092 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = +2 Query: 377 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMT 556 S CR V++G ++P E + F+G G + L K FGFV++ D R A A+ Sbjct: 2 SGCR-VFIGRLNPAAREKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYE 56 Query: 557 LHGRHI 574 L G+ + Sbjct: 57 LDGKEL 62
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 35.8 bits (81), Expect = 0.092 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 556 ++Y+GN+ VT+++L E+ +GPV + +R + FGF ++ + A Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71 Query: 557 LHGRHIYG 580 L+ ++G Sbjct: 72 LNQVKLFG 79
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 572 IYG 580 ++G Sbjct: 60 LHG 62 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 572 IYG 580 G Sbjct: 136 FQG 138
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 572 IYG 580 ++G Sbjct: 60 LHG 62 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 572 IYG 580 G Sbjct: 136 FQG 138
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 572 IYG 580 ++G Sbjct: 60 LHG 62 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 572 IYG 580 G Sbjct: 136 FQG 138
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 35.8 bits (81), Expect = 0.092 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 553 RSV+VGN+ E L + F+ G +E ++IR K++ F +V + D +S + A++ Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 418 Query: 554 TLHGRHIY 577 LH + I+ Sbjct: 419 -LHEKKIH 425
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 35.8 bits (81), Expect = 0.092 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = +2 Query: 377 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMT 556 S CR V++G ++P E + F+G G + L K FGFV++ D R A A+ Sbjct: 2 SGCR-VFIGRLNPAAREKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYE 56 Query: 557 LHGRHI 574 L G+ + Sbjct: 57 LDGKEL 62
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 572 IYG 580 ++G Sbjct: 60 LHG 62 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 572 IYG 580 G Sbjct: 136 FQG 138
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 572 IYG 580 ++G Sbjct: 60 LHG 62 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 572 IYG 580 G Sbjct: 136 FQG 138
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 572 IYG 580 ++G Sbjct: 60 LHG 62 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/67 (28%), Positives = 27/67 (40%) Frame = +2 Query: 380 TCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTL 559 T ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGL 131 Query: 560 HGRHIYG 580 G Sbjct: 132 DNTEFQG 138
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 35.8 bits (81), Expect = 0.092 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = +2 Query: 377 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMT 556 S CR V++G ++P E + F+G G + L K FGFV++ D R A A+ Sbjct: 2 SGCR-VFIGRLNPAAREKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYE 56 Query: 557 LHGRHI 574 L G+ + Sbjct: 57 LDGKEL 62
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 572 IYG 580 ++G Sbjct: 60 LHG 62 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/67 (28%), Positives = 27/67 (40%) Frame = +2 Query: 380 TCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTL 559 T ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGL 131 Query: 560 HGRHIYG 580 G Sbjct: 132 DNTEFQG 138
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 35.8 bits (81), Expect = 0.092 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTLH 562 R+VYVGN+ ++ E + ++F GPV + L + + FV++ D R A AI H Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI---H 63 Query: 563 GRHIY 577 GR Y Sbjct: 64 GRDGY 68
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 35.4 bits (80), Expect = 0.12 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 VY+G + ++ + F+G G + + K+ FGFVD+ D+R A A+ L+G+ Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIM----KNGFGFVDFQDQRDADDAVHDLNGKE 59 Query: 572 IYG 580 + G Sbjct: 60 LCG 62
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Frame = +2 Query: 335 EPVSNGNLPPGFDPSTCRSVYVGNVH-PNVTENLLIEVFQGSGPVERCKLIRKE--KSSF 505 +P GN+ P R+VYVGN++ T + L+E F+ G V+ ++ E + F Sbjct: 52 QPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRF 111 Query: 506 GFVDYYDRRSAALAI 550 FV++ D+ S A+ Sbjct: 112 AFVEFADQNSVPRAL 126
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Frame = +2 Query: 335 EPVSNGNLPPGFDPSTCRSVYVGNVH-PNVTENLLIEVFQGSGPVERCKLIRKE--KSSF 505 +P GN+ P R+VYVGN++ T + L+E F+ G V+ ++ E + F Sbjct: 52 QPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRF 111 Query: 506 GFVDYYDRRSAALAI 550 FV++ D+ S A+ Sbjct: 112 AFVEFADQNSVPRAL 126
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Frame = +2 Query: 335 EPVSNGNLPPGFDPSTCRSVYVGNVH-PNVTENLLIEVFQGSGPVERCKLIRKE--KSSF 505 +P GN+ P R+VYVGN++ T + L+E F+ G V+ ++ E + F Sbjct: 49 QPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRF 108 Query: 506 GFVDYYDRRSAALAI 550 FV++ D+ S A+ Sbjct: 109 AFVEFADQNSVPRAL 123
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 35.0 bits (79), Expect = 0.16 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSS--FGFVDYYDRRSAALAIMT 556 R++YV + L F+ GP+ RC + I + ++S F FV+Y D R A A Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYE 66 Query: 557 LHGRHI 574 +HGR + Sbjct: 67 VHGRRL 72
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 34.7 bits (78), Expect = 0.21 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Frame = +2 Query: 371 DPSTCRSVYVGNVHP-NVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRS 535 DP + + N P ++T+ L +F+ GP+ C+++R K+ SFG FVD+ Sbjct: 119 DPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 178 Query: 536 AALAIMTLHG 565 + AI L+G Sbjct: 179 SQRAIKVLNG 188
>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy| suppressor of sporulation protein msa2) Length = 529 Score = 34.7 bits (78), Expect = 0.21 Identities = 16/59 (27%), Positives = 35/59 (59%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTL 559 CR+V++GN+ +TE+ + E + GP+++ K++ + + FV + + +A A+ L Sbjct: 205 CRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER--NIAFVHFLNIAAAIKAVQEL 261 Score = 30.0 bits (66), Expect = 5.0 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 11/85 (12%) Frame = +2 Query: 353 NLPPGFDP------STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF-GF 511 N PG+ P ++VYVGN+ PN + ++ + +GP+E ++ ++ +F F Sbjct: 98 NFAPGYFPLPNNTTQPVKTVYVGNLPPNTPIDEILSCVR-TGPIESAWILPEKNCAFISF 156 Query: 512 VDYYDR----RSAALAIMTLHGRHI 574 +D + AAL +T+ G + Sbjct: 157 LDPSHATAFFQDAALKRLTIRGTEV 181
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 34.7 bits (78), Expect = 0.21 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMTL 559 VY+GN+ VT LL + F G V K+ R + + FGFV + AI L Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245 Query: 560 HGRHIYG 580 + + G Sbjct: 246 NNSVLEG 252
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 34.7 bits (78), Expect = 0.21 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Frame = +2 Query: 323 MTQME-PVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR---- 487 MT +E NG+ +P R ++VG + N T++L+ E + G + ++R Sbjct: 1 MTDVEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTT 60 Query: 488 KEKSSFGFVDY 520 K FGFV + Sbjct: 61 KRSRGFGFVTF 71
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 34.3 bits (77), Expect = 0.27 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS-------FGFVDYYDRRSAALA 547 ++++ N++ + TE L VF G ++ C + +K+ + FGFV+Y A A Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782 Query: 548 IMTLHGRHIYG 580 + L G + G Sbjct: 783 LKQLQGHTVDG 793
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 34.3 bits (77), Expect = 0.27 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 553 RSV+VGN+ +E L + F GP+E +++R K++ F +V + D S A++ Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 34.3 bits (77), Expect = 0.27 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLI----RKEKSSFGFVDYYDRRSAALAIMT 556 +++VG + +++ L +F GP+ KLI + E + +GF+ Y A+L I Sbjct: 196 NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKE 255 Query: 557 LHGRHIYG 580 L+GR + G Sbjct: 256 LNGRTVNG 263
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 34.3 bits (77), Expect = 0.27 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = +2 Query: 416 NVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGR 568 +V E+ L E+F GP++ K++ + F FV++ + SAA AI +HG+ Sbjct: 135 DVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGK 181
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 33.9 bits (76), Expect = 0.35 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI----RKEKSSFGFVDYYDRRSAALAIM 553 R VY+G++ + TE ++++ GPV K++ + F+++ D S+A A+ Sbjct: 18 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 77 Query: 554 TLHG 565 L+G Sbjct: 78 NLNG 81
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 33.9 bits (76), Expect = 0.35 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++ P+V+E L ++F G V ++ R K + +V++ D + AI Sbjct: 38 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 97 Query: 557 LHGRHIYG 580 L+ I G Sbjct: 98 LNYTPIKG 105 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAALAIMTL 559 ++YV N++ T+ E+F GP+ L + + FGFV+Y A A+ L Sbjct: 219 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 278 Query: 560 HGRHIYG 580 + + G Sbjct: 279 NDSELNG 285
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 33.5 bits (75), Expect = 0.46 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Frame = +2 Query: 377 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAAL 544 S S+++GN+ VTE +L ++F+ E K+ R K+ +G++++ D+ A Sbjct: 108 SKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAES 167 Query: 545 A 547 A Sbjct: 168 A 168
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 33.5 bits (75), Expect = 0.46 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVF-QGSGPVERCKLIRKE----KSSFG 508 SN +L + C S++VG++ PNVTE+ L E+F K++ + +G Sbjct: 150 SNNSLNNVKSGNNC-SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYG 208 Query: 509 FVDYYDRRSAALAIMTLHGRHIYG 580 FV + + LA+ + G + G Sbjct: 209 FVKFTNSDEQQLALSEMQGVFLNG 232 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/65 (35%), Positives = 32/65 (49%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAI 550 DP+ +V++G + VTE+ L FQ G + K+ GFV Y DR SA AI Sbjct: 309 DPNNT-TVFIGGLSSLVTEDELRAYFQPFGTIVYVKI--PVGKCCGFVQYVDRLSAEAAI 365 Query: 551 MTLHG 565 + G Sbjct: 366 AGMQG 370
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 33.5 bits (75), Expect = 0.46 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Frame = +2 Query: 377 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRSAAL 544 S+ ++ V + ++T+ L +F+ GP+ C+++R K+ SFG FVD+ + Sbjct: 124 SSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQR 183 Query: 545 AIMTLHG 565 AI L+G Sbjct: 184 AIKVLNG 190
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 33.5 bits (75), Expect = 0.46 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAA 541 P F + +V+VG + V+E L +FQ G + K+ GFV + +R+SA Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI--PPGKGCGFVQFVNRQSAE 352 Query: 542 LAIMTLHG 565 +AI L G Sbjct: 353 IAINQLQG 360
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 33.1 bits (74), Expect = 0.60 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE---KSSFGFVDYYDRRSAALAIMT 556 R +++G + TEN + +F G +E C+++R FV + R A AI Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKA 167 Query: 557 LH 562 +H Sbjct: 168 MH 169
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 33.1 bits (74), Expect = 0.60 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE---KSSFGFVDYYDRRSAALAIMT 556 R +++G + TEN + +F G +E C+++R FV + R A AI Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 167 Query: 557 LH 562 +H Sbjct: 168 MH 169
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 33.1 bits (74), Expect = 0.60 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 8/71 (11%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVER----CKLIRKEKSSFGFVDYYD----RRSAA 541 RS+YVGNV T L F G G V R C F ++++ D R S A Sbjct: 167 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 226 Query: 542 LAIMTLHGRHI 574 L GR I Sbjct: 227 LDESLFRGRQI 237
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 33.1 bits (74), Expect = 0.60 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 8/71 (11%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVER----CKLIRKEKSSFGFVDYYD----RRSAA 541 RS+YVGNV T L F G G V R C F ++++ D R S A Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 230 Query: 542 LAIMTLHGRHI 574 L GR I Sbjct: 231 LDESLFRGRQI 241
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 33.1 bits (74), Expect = 0.60 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 8/71 (11%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVER----CKLIRKEKSSFGFVDYYD----RRSAA 541 RS+YVGNV T L F G G V R C F ++++ D R S A Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 230 Query: 542 LAIMTLHGRHI 574 L GR I Sbjct: 231 LDESLFRGRQI 241
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 33.1 bits (74), Expect = 0.60 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGF 511 S G G + VYVGN+ V + L E+F G V K++ S FGF Sbjct: 193 SFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGF 252 Query: 512 VDYYDRRSAALAIMTLHGRHIYG 580 V Y + AI +L+G + G Sbjct: 253 VTYSSSKEVNDAIDSLNGVDLDG 275
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 33.1 bits (74), Expect = 0.60 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGF 511 S G G + VYVGN+ V + L E+F G V K++ S FGF Sbjct: 194 SFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGF 253 Query: 512 VDYYDRRSAALAIMTLHGRHIYG 580 V Y + AI +L+G + G Sbjct: 254 VTYSSAKEVNDAIDSLNGIDLDG 276
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 33.1 bits (74), Expect = 0.60 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIR---KEKSSFGFVDYYDRRSAALAIMTLH 562 ++VG+++ TE + E+F G VE L+R ++ GFV Y + +A AI L+ Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272 Query: 563 GRH 571 G + Sbjct: 273 GTY 275
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 32.7 bits (73), Expect = 0.78 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAI 550 RS++VG + T L F G ++ LI K + F F+ Y +AA A+ Sbjct: 346 RSIFVGQLDKETTREELNRRFSTHGKIQDINLIFKPTNIFAFIKYETEEAAAAAL 400
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 32.7 bits (73), Expect = 0.78 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = +2 Query: 398 VGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSSFGFVDYYDRRSAALAIMTLHG 565 + NV + T E+ + G +ERC L+ E +GFV+Y + AA A + L G Sbjct: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLG 205 Query: 566 RHI 574 R + Sbjct: 206 RQL 208
>PDIP3_MOUSE (Q8BG81) Polymerase delta-interacting protein 3| Length = 420 Score = 32.7 bits (73), Expect = 0.78 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 538 P P + V N+HP VTE ++E+F G ++R +L+ + FV D +A Sbjct: 272 PVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA 330
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 32.7 bits (73), Expect = 0.78 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAA--LA 547 + ++VG + +V E LIE F G VE+ ++I ++S FGFV Y+ AA A Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV-YFQNHDAADKAA 156 Query: 548 IMTLH 562 ++ H Sbjct: 157 VVKFH 161
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 32.7 bits (73), Expect = 0.78 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 VYVGN+ + +++ + F GP+ R + + F FV++ DRR A A L G Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPL-RNVWVARNPPGFAFVEFEDRRDAEDATRALDGTR 71 Query: 572 IYG 580 G Sbjct: 72 CCG 74
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 32.7 bits (73), Expect = 0.78 Identities = 18/65 (27%), Positives = 31/65 (47%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHG 565 + VYVGN+ +V E + ++F G ++ + +F FV++ D R A A+ G Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68 Query: 566 RHIYG 580 G Sbjct: 69 YEFDG 73
>PDIP3_HUMAN (Q9BY77) Polymerase delta-interacting protein 3 (46 kDa DNA| polymerase delta interaction protein) (p46) Length = 421 Score = 32.7 bits (73), Expect = 0.78 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 538 P P + V N+HP VTE ++E+F G ++R +L+ + FV D +A Sbjct: 272 PVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA 330
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 32.7 bits (73), Expect = 0.78 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAA 541 P P R V N HP + ++L ++F G + L+ + + G+V Y DR+SA Sbjct: 385 PPETPVKERLFVVFNPHP-LPLDVLEDIFCRFGNLIEVYLVSGK--NVGYVKYADRKSAN 441 Query: 542 LAIMTLHGRHIYG 580 AI TLHG+ + G Sbjct: 442 EAITTLHGKILNG 454
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 553 RS++VGN+ E L + F+ G +E ++IR K++ F +V + D +S A++ Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 32.3 bits (72), Expect = 1.0 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRSAALAIMT 556 ++ V + ++T+ L +F+ GP+ C++++ K+ SFG FVD+ A AI T Sbjct: 103 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKT 162 Query: 557 LHG 565 ++G Sbjct: 163 VNG 165
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 32.3 bits (72), Expect = 1.0 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIM 553 R++YVG + VTE LL F G + ++ +S F F++Y AA AI Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65 Query: 554 TLHGRHIYG 580 ++ + G Sbjct: 66 NMNDSELCG 74
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 32.3 bits (72), Expect = 1.0 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMT 556 ++ V + ++ + L +F+ GP+ C+++R K+ +GFVD+ A AI Sbjct: 79 NLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINN 138 Query: 557 LHG 565 L+G Sbjct: 139 LNG 141
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 32.3 bits (72), Expect = 1.0 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 ++VG ++ N E L + F GP+ +++ ++ FGF+ + + A++A+ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 560 HGRHIYG 580 +G + G Sbjct: 68 NGESLDG 74
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%) Frame = +2 Query: 398 VGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTLHGR 568 V N+H N+T+ + +F+ G +E L R +++ FG++ Y + SA A+ ++G Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGF 403 Query: 569 HIYG 580 + G Sbjct: 404 DLAG 407
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRSAALAIMT 556 ++ V + ++T+ L +F+ GP+ C++++ K+ SFG FVD+ A AI + Sbjct: 86 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKS 145 Query: 557 LHG 565 L+G Sbjct: 146 LNG 148
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGF 511 S+ + G+D + ++Y+ + PN T+ L+++ Q G + K I + ++ +GF Sbjct: 48 SSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGF 107 Query: 512 VDYYDRRSAALAIMTL 559 VD+ +A A+ L Sbjct: 108 VDFDSPAAAQKAVSAL 123
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRSAALAIMT 556 ++ V + ++T+ L +F+ GP+ C+++R K+ SFG FVD+ + AI + Sbjct: 111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKS 170 Query: 557 LHG 565 L+G Sbjct: 171 LNG 173
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 VYVGN+ V + L +F G V ++I S FGFV Y + AI +L Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265 Query: 560 HGRHIYG 580 G + G Sbjct: 266 DGADLDG 272
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 31.6 bits (70), Expect = 1.7 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMT 556 S+YVGN+ +V+E L VF G V+R +L ++ FGFV+ AI Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 557 LHGRHIYG 580 L G G Sbjct: 62 LDGAEWMG 69
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 31.6 bits (70), Expect = 1.7 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDY 520 RS++VGN+ P+VT + + F+ G ++R L+ + +G++++ Sbjct: 64 RSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEF 112
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 31.6 bits (70), Expect = 1.7 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Frame = +2 Query: 368 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRS 535 FD S VYVGN+ V ++ L +F G V K++ S FGFV Y Sbjct: 184 FDSSN--RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 241 Query: 536 AALAIMTLHGRHIYG 580 AI +L G + G Sbjct: 242 VNNAIESLDGVDLNG 256
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 31.6 bits (70), Expect = 1.7 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Frame = +2 Query: 368 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRS 535 FD S VYVGN+ V ++ L +F G V K++ S FGFV Y Sbjct: 190 FDSSN--RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 247 Query: 536 AALAIMTLHGRHIYG 580 AI +L G + G Sbjct: 248 VNNAIESLDGVDLNG 262
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 362 PGFDPSTCRS-VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 538 PG T RS ++VGN+ P++TE + ++F+ G I K+K FGF+ R A Sbjct: 67 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDK-GFGFIRLETRTLA 124 Query: 539 ALAIMTLHGRHIYG 580 +A + L + G Sbjct: 125 EIAKVELDNMPLRG 138
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTLH 562 +++G ++ E +L VF GP+ LI+ S F F+ + + A A ++ Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 563 GRHIYG 580 G+ ++G Sbjct: 70 GKSLHG 75
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 362 PGFDPSTCRS-VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 538 PG T RS ++VGN+ P++TE + ++F+ G I K+K FGF+ R A Sbjct: 70 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDK-GFGFIRLETRTLA 127 Query: 539 ALAIMTLHGRHIYG 580 +A + L + G Sbjct: 128 EIAKVELDNMPLRG 141
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 362 PGFDPSTCRS-VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 538 PG T RS ++VGN+ P++TE + ++F+ G I K+K FGF+ R A Sbjct: 65 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDK-GFGFIRLETRTLA 122 Query: 539 ALAIMTLHGRHIYG 580 +A + L + G Sbjct: 123 EIAKVELDNMPLRG 136
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 362 PGFDPSTCRS-VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 538 PG T RS ++VGN+ P++TE + ++F+ G I K+K FGF+ R A Sbjct: 65 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDK-GFGFIRLETRTLA 122 Query: 539 ALAIMTLHGRHIYG 580 +A + L + G Sbjct: 123 EIAKVELDNMPLRG 136
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = +2 Query: 368 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR-KEKSSFGFVDYYDRRSAAL 544 F P R++++GN+ T + L +FQ G + + + + F+ Y D S Sbjct: 432 FHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCK 491 Query: 545 AIMTLHGRHI 574 AI + G ++ Sbjct: 492 AIKKMDGEYL 501
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = +2 Query: 368 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR-KEKSSFGFVDYYDRRSAAL 544 F P R++++GN+ T + L +FQ G + + + + F+ Y D S Sbjct: 433 FHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCK 492 Query: 545 AIMTLHGRHI 574 AI + G ++ Sbjct: 493 AIKKMDGEYL 502
>CP192_PIG (P79430) Cytochrome P450 19 type II (EC 1.14.14.1) (Aromatase)| (CYPXIXA2) (Estrogen synthetase) (P-450AROM) Length = 503 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 359 PPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERC 475 P GF P C Y+ V VT +L+ FQ P +RC Sbjct: 429 PFGFGPRACAGKYIAMVMMKVTLVILLRRFQVQTPQDRC 467
>CP191_PIG (Q29624) Cytochrome P450 19 type I (EC 1.14.14.1) (Aromatase)| (CYPXIXA1) (Estrogen synthetase) (P-450AROM) Length = 503 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 359 PPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERC 475 P GF P C Y+ V VT +L+ FQ P +RC Sbjct: 429 PFGFGPRACAGKYIAMVMMKVTLVILLRRFQVQTPQDRC 467
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 31.2 bits (69), Expect = 2.3 Identities = 25/73 (34%), Positives = 37/73 (50%) Frame = +2 Query: 362 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAA 541 P P R V N HP + ++L ++F G + L+ + + G+V Y DR SA Sbjct: 385 PPETPVKERLFIVFNPHP-LPLDVLEDIFCRFGNLIEVYLVSGK--NVGYVKYADRMSAN 441 Query: 542 LAIMTLHGRHIYG 580 AI TLHG+ + G Sbjct: 442 DAITTLHGKILNG 454
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIM 553 +SV++GNV N T + E F+G G + R + K++ +F ++++ D S A++ Sbjct: 61 KSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALV 120
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDY---YDRRSAALA 547 +++VG + P+ + L E+F GPV++C ++ ++ S FG+V + D + A Sbjct: 4 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63 Query: 548 IMTLHG 565 I T G Sbjct: 64 ITTFEG 69
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 30.8 bits (68), Expect = 3.0 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +2 Query: 368 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRS 535 F+PS CR VYVGN+ +V + L ++F G V +++ ++ FGFV Sbjct: 145 FEPS-CR-VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 202 Query: 536 AALAIMTLHGRHIYG 580 AI L G+ + G Sbjct: 203 VNDAIAALDGQTLDG 217
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 553 RSV+VGN+ E L + F G +E +++R K++ F +V + + +S + A++ Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287
>ALG8_YEAST (P40351) Dolichyl pyrophosphate Glc1Man9GlcNAc2| alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase) Length = 577 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 454 ALENFNQKVLSDIRVYIPYIHTATCGWIKP 365 AL +F K+L+ + + +PY+HT +IKP Sbjct: 314 ALYSFMDKILTTVMLKLPYVHTFATKFIKP 343
>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3| Length = 432 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIM------ 553 V+V NV ++EN L+++FQ G + + ++R + + + D SA A+ Sbjct: 8 VHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQA--LLQMQDVSSAVSALQFFTNVQ 65 Query: 554 -TLHGRHIY 577 T+ GR++Y Sbjct: 66 PTIRGRNVY 74
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 7/66 (10%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDY---YDRRSAALA 547 +++VG + P+ L E+F GPV++C ++ ++ S FG+V + D + A Sbjct: 4 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63 Query: 548 IMTLHG 565 I T G Sbjct: 64 ITTFEG 69
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 30.4 bits (67), Expect = 3.9 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2 Query: 386 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIM 553 +SV++GNV N T + E F+G G + + + K++ +F ++++ D S A++ Sbjct: 101 KSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALV 160
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = +2 Query: 440 EVFQGSGPVERCKLIRKE----KSSFGFVDYYDRRSAALAIMTLHGRHI 574 E+ + G +ERC L+ E +GFV+Y + AA A + L GR + Sbjct: 149 ELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQM 197
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 30.4 bits (67), Expect = 3.9 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 559 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYAR 73 Query: 560 HG 565 G Sbjct: 74 DG 75
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 559 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--- 70 Query: 560 HGRHIY 577 +GR Y Sbjct: 71 YGRDGY 76
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 S+ + N+ T N L F+ G + + R ++ FGFV +Y+RR A A+ Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79 Query: 557 LHGRHIYG 580 G+ + G Sbjct: 80 TDGKLVDG 87
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 559 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--- 70 Query: 560 HGRHIY 577 +GR Y Sbjct: 71 YGRDGY 76
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 559 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--- 70 Query: 560 HGRHIY 577 +GR Y Sbjct: 71 YGRDGY 76
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 559 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--- 70 Query: 560 HGRHIY 577 +GR Y Sbjct: 71 YGRDGY 76
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 559 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 16 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--- 71 Query: 560 HGRHIY 577 +GR Y Sbjct: 72 YGRDGY 77
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +2 Query: 359 PPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYD 526 P F P+ +YVGN+ ++ + L +VF G V +++ +S FGFV Sbjct: 184 PRTFQPTY--RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSS 241 Query: 527 RRSAALAIMTLHGRHIYG 580 + AI L G+ + G Sbjct: 242 EAEMSEAIANLDGQTLDG 259
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 ++VG ++ N E L + F GP+ +++ ++ FGF+ + + A+ A+ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 560 HGRHIYG 580 +G + G Sbjct: 68 NGESLDG 74
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/59 (32%), Positives = 31/59 (52%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGR 568 +Y+GN+ +VTE L E+F G + + ++ +F +DY R +A A L GR Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDY--RANAERAKKDLDGR 171
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 30.0 bits (66), Expect = 5.0 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%) Frame = +2 Query: 341 VSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFG 508 +S G PP + T S+ V N+ + + L VF+ G V + R KE F Sbjct: 1 MSYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFA 58 Query: 509 FVDYYDRRSAALAIMTLHGRHIYG 580 FV ++D+R A A+ + G + G Sbjct: 59 FVRFHDKRDAEDAMDAMDGAVLDG 82
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 30.0 bits (66), Expect = 5.0 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 383 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 559 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--- 70 Query: 560 HGRHIY 577 +GR Y Sbjct: 71 YGRDGY 76
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMTL 559 ++V + + E+ L ++F G V +++R K FGF+ + A AI L Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 560 HGRHIYG 580 + + YG Sbjct: 163 NSQEFYG 169
>EF3B_YEAST (P53978) Elongation factor 3B (EF-3B) (Translation elongation| factor 3B) (Homolog of EF-3) Length = 1043 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +2 Query: 326 TQMEPVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF 505 T M ++NG + CR+VYV + N ++ + F SG V +I + F Sbjct: 470 TLMRSIANGQVDGFPTQDECRTVYVEHDIDNTHSDMSVLDFVYSGNVGTKDVITSKLKEF 529 Query: 506 GFVD 517 GF D Sbjct: 530 GFSD 533
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 30.0 bits (66), Expect = 5.0 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAI 550 DP T +V+VG + P TE L +F+ GP+ ++ + GFV + R A +I Sbjct: 356 DP-TNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI--PNGKNCGFVKFEKRIDAEASI 412 Query: 551 MTLHG 565 L G Sbjct: 413 QGLQG 417
>SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cell wall protein| 1) Length = 561 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/71 (26%), Positives = 30/71 (42%) Frame = +2 Query: 353 NLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRR 532 N P C ++YVGN+ P+ +E L +F +R K FV++ + Sbjct: 415 NTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIP 474 Query: 533 SAALAIMTLHG 565 A A+ L G Sbjct: 475 YAMEALKNLQG 485
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 29.6 bits (65), Expect = 6.6 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGF 511 S G PP + T S+ V N+ + + L VF+ G V + R KE F F Sbjct: 1 SYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 512 VDYYDRRSAALAIMTLHGRHIYG 580 V ++D+R A A+ + G + G Sbjct: 59 VRFHDKRDAEDAMDAMDGAVLDG 81
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 29.6 bits (65), Expect = 6.6 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGF 511 S G PP + T S+ V N+ + + L VF+ G V + R KE F F Sbjct: 1 SYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 512 VDYYDRRSAALAIMTLHGRHIYG 580 V ++D+R A A+ + G + G Sbjct: 59 VRFHDKRDAEDAMDAMDGAVLDG 81
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 29.6 bits (65), Expect = 6.6 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGF 511 S G PP + T S+ V N+ + + L VF+ G V + R KE F F Sbjct: 1 SYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 512 VDYYDRRSAALAIMTLHGRHIYG 580 V ++D+R A A+ + G + G Sbjct: 59 VRFHDKRDAEDAMDAMDGAVLDG 81
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 29.6 bits (65), Expect = 6.6 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = +2 Query: 344 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGF 511 S G PP + T S+ V N+ + + L VF+ G V + R KE F F Sbjct: 1 SYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 512 VDYYDRRSAALAIMTLHGRHIYG 580 V ++D+R A A+ + G + G Sbjct: 59 VRFHDKRDAEDAMDAMDGAVLDG 81
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 29.6 bits (65), Expect = 6.6 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Frame = +2 Query: 350 GNLPP-----GFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSS 502 G PP G PS ++VG + ++ E+ L+ +F+ +GP+ +L+ Sbjct: 55 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114 Query: 503 FGFVDYYDRRSAALAIMTLHGRHI 574 + FV + + +A A+ + I Sbjct: 115 YAFVTFCTKEAAQEAVKLYNNHEI 138
>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7| Length = 920 Score = 29.6 bits (65), Expect = 6.6 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +1 Query: 115 GSRGPSVPRCLDPVGVGG 168 G RGPSVP ++P G+GG Sbjct: 200 GPRGPSVPAGMNPTGIGG 217
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 29.6 bits (65), Expect = 6.6 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = +2 Query: 389 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 556 S+YVG++ +V E+ L + F +GPV ++ R + + +V++ A A+ T Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62 Query: 557 LH 562 ++ Sbjct: 63 MN 64
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 29.6 bits (65), Expect = 6.6 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 559 VYVGN+ +V L ++F G V +++ ++ FGFV D AI L Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 560 HGRHIYG 580 G+++ G Sbjct: 306 DGQNLEG 312
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 29.6 bits (65), Expect = 6.6 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGR 568 ++V N+HP ++ L E+F G ++ +L+ K F + Y + A + GR Sbjct: 726 IFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGR 784
>POF_DROME (Q9W123) Protein painting of fourth (Zeste-interacting protein 16)| (Zip16 protein) Length = 495 Score = 29.6 bits (65), Expect = 6.6 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +2 Query: 329 QMEPVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFG 508 +++P S+ DP S+YVGN+ N+T + + F + V+ L R++++ + Sbjct: 199 ELKPFSDEEQAEFIDPC---SLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREKRARYA 255 Query: 509 FVDY 520 FV Y Sbjct: 256 FVRY 259
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 29.6 bits (65), Expect = 6.6 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = +2 Query: 371 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSA 538 D +T R V N+ + E L ++F+ G ++R L + +++ F FV YYDR A Sbjct: 200 DSATLR---VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256 Query: 539 ALAIMTLHG 565 A L G Sbjct: 257 IKARDRLDG 265
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 29.6 bits (65), Expect = 6.6 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Frame = +2 Query: 350 GNLPP-----GFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSS 502 G PP G PS ++VG + ++ E+ L+ +F+ +GP+ +L+ Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 503 FGFVDYYDRRSAALAIMTLHGRHI 574 + FV + + +A A+ + I Sbjct: 205 YAFVTFCTKEAAQEAVKLYNNHEI 228
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 29.6 bits (65), Expect = 6.6 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Frame = +2 Query: 350 GNLPP-----GFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSS 502 G PP G PS ++VG + ++ E+ L+ +F+ +GP+ +L+ Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 503 FGFVDYYDRRSAALAIMTLHGRHI 574 + FV + + +A A+ + I Sbjct: 205 YAFVTFCTKEAAQEAVKLYNNHEI 228
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 29.3 bits (64), Expect = 8.6 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = +2 Query: 377 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAAL 544 +T ++VG + + T+ L + F+G G +E +I ++ +GFV DR +A Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67 Query: 545 A 547 A Sbjct: 68 A 68
>NELFE_DROME (P92204) Negative elongation factor E| Length = 280 Score = 29.3 bits (64), Expect = 8.6 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +2 Query: 419 VTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRHIYG 580 VTE+ L + F G + + + + S GFV + SA AI +HG+++ G Sbjct: 175 VTEDFLKKTFNDYGTIVNVSM--EIEKSRGFVSFAKPESADRAIAEIHGKNVNG 226
>PCD10_HUMAN (Q9P2E7) Protocadherin-10 precursor| Length = 1040 Score = 29.3 bits (64), Expect = 8.6 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Frame = +1 Query: 16 LTSSSSVPLLDPP------RXNSPPNLLICWIQSADPSIGSRGPSV 135 L S+ +VP D P NSPP L+ + + DP G G V Sbjct: 241 LDSNDNVPAFDQPVYTVSLPENSPPGTLVIQLNATDPDEGQNGEVV 286
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = +2 Query: 392 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 571 +Y+G + N E + +G G + + K F FVD+ D R A A L G+ Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISM----KYGFAFVDFEDSRDAEDACHDLDGKT 59 Query: 572 IYG 580 + G Sbjct: 60 MEG 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,273,659 Number of Sequences: 219361 Number of extensions: 1393230 Number of successful extensions: 4849 Number of sequences better than 10.0: 194 Number of HSP's better than 10.0 without gapping: 4559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4804 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
