Clone Name | bags9a01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470010.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1794 Score = 208 bits (105), Expect = 1e-50 Identities = 207/240 (86%), Gaps = 1/240 (0%) Strand = Plus / Plus Query: 22 ggcatgcacagcttgaccgatgttatcgctgggnatctcttttggcatcgtgatccttgc 81 |||||||||||||||| |||||||| ||||| |||| ||||||| | || ||||| || Sbjct: 886 ggcatgcacagcttgattgatgttattgctgg-catctgttttggcgttgtaatcctggc 944 Query: 82 attctggttggttgtccatgatcatgttgatgcctttgtcgtctctggccaaaacgttac 141 ||||||||||| ||||||| ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct: 945 attctggttggctgtccataatcatgtcgatgcttttgttgtctccggtcaaaatgttac 1004 Query: 142 attcttctgggcaagccttgccctagtgctctgctttgcatatccaaagccagagttccc 201 | ||||||||| |||||| | || |||| ||||| ||||||||||| ||||| ||||| Sbjct: 1005 aaccttctgggcgagcctttctctgttgctgtgcttcgcatatccaaaaccagaattccc 1064 Query: 202 aactcctagctttgaattccacacagcattcaacggggtcgctttcggaattgtctatgg 261 ||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 1065 aactcctagctttgaataccacacagcattcaatggggtggcttttggaattgtctatgg 1124 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 343 cgggagggtcctggtgggcatcccgaccatcctagccgtgaagtcctgcagcaaggcgct 402 ||||||||| || ||||| ||||| |||||||||| ||||| | |||||| || || || Sbjct: 1206 cgggagggttctcgtggggatcccaaccatcctagttgtgaaattctgcagtaaagctct 1265 Query: 403 ctcgaaatggctcctgccggtcatgtgcagcaccctggg 441 |||||||||||| || ||||| ||||||| ||||||||| Sbjct: 1266 ctcgaaatggcttctaccggtgatgtgcaacaccctggg 1304
>dbj|AK102189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P22, full insert sequence Length = 1698 Score = 208 bits (105), Expect = 1e-50 Identities = 207/240 (86%), Gaps = 1/240 (0%) Strand = Plus / Plus Query: 22 ggcatgcacagcttgaccgatgttatcgctgggnatctcttttggcatcgtgatccttgc 81 |||||||||||||||| |||||||| ||||| |||| ||||||| | || ||||| || Sbjct: 746 ggcatgcacagcttgattgatgttattgctgg-catctgttttggcgttgtaatcctggc 804 Query: 82 attctggttggttgtccatgatcatgttgatgcctttgtcgtctctggccaaaacgttac 141 ||||||||||| ||||||| ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct: 805 attctggttggctgtccataatcatgtcgatgcttttgttgtctccggtcaaaatgttac 864 Query: 142 attcttctgggcaagccttgccctagtgctctgctttgcatatccaaagccagagttccc 201 | ||||||||| |||||| | || |||| ||||| ||||||||||| ||||| ||||| Sbjct: 865 aaccttctgggcgagcctttctctgttgctgtgcttcgcatatccaaaaccagaattccc 924 Query: 202 aactcctagctttgaattccacacagcattcaacggggtcgctttcggaattgtctatgg 261 ||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 925 aactcctagctttgaataccacacagcattcaatggggtggcttttggaattgtctatgg 984 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 343 cgggagggtcctggtgggcatcccgaccatcctagccgtgaagtcctgcagcaaggcgct 402 ||||||||| || ||||| ||||| |||||||||| ||||| | |||||| || || || Sbjct: 1066 cgggagggttctcgtggggatcccaaccatcctagttgtgaaattctgcagtaaagctct 1125 Query: 403 ctcgaaatggctcctgccggtcatgtgcagcaccctggg 441 |||||||||||| || ||||| ||||||| ||||||||| Sbjct: 1126 ctcgaaatggcttctaccggtgatgtgcaacaccctggg 1164
>dbj|AK071708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111M04, full insert sequence Length = 1796 Score = 208 bits (105), Expect = 1e-50 Identities = 207/240 (86%), Gaps = 1/240 (0%) Strand = Plus / Plus Query: 22 ggcatgcacagcttgaccgatgttatcgctgggnatctcttttggcatcgtgatccttgc 81 |||||||||||||||| |||||||| ||||| |||| ||||||| | || ||||| || Sbjct: 888 ggcatgcacagcttgattgatgttattgctgg-catctgttttggcgttgtaatcctggc 946 Query: 82 attctggttggttgtccatgatcatgttgatgcctttgtcgtctctggccaaaacgttac 141 ||||||||||| ||||||| ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct: 947 attctggttggctgtccataatcatgtcgatgcttttgttgtctccggtcaaaatgttac 1006 Query: 142 attcttctgggcaagccttgccctagtgctctgctttgcatatccaaagccagagttccc 201 | ||||||||| |||||| | || |||| ||||| ||||||||||| ||||| ||||| Sbjct: 1007 aaccttctgggcgagcctttctctgttgctgtgcttcgcatatccaaaaccagaattccc 1066 Query: 202 aactcctagctttgaattccacacagcattcaacggggtcgctttcggaattgtctatgg 261 ||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 1067 aactcctagctttgaataccacacagcattcaatggggtggcttttggaattgtctatgg 1126 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 343 cgggagggtcctggtgggcatcccgaccatcctagccgtgaagtcctgcagcaaggcgct 402 ||||||||| || ||||| ||||| |||||||||| ||||| | |||||| || || || Sbjct: 1208 cgggagggttctcgtggggatcccaaccatcctagttgtgaaattctgcagtaaagctct 1267 Query: 403 ctcgaaatggctcctgccggtcatgtgcagcaccctggg 441 |||||||||||| || ||||| ||||||| ||||||||| Sbjct: 1268 ctcgaaatggcttctaccggtgatgtgcaacaccctggg 1306
>dbj|AK060174.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H07, full insert sequence Length = 936 Score = 208 bits (105), Expect = 1e-50 Identities = 207/240 (86%), Gaps = 1/240 (0%) Strand = Plus / Plus Query: 22 ggcatgcacagcttgaccgatgttatcgctgggnatctcttttggcatcgtgatccttgc 81 |||||||||||||||| |||||||| ||||| |||| ||||||| | || ||||| || Sbjct: 24 ggcatgcacagcttgattgatgttattgctgg-catctgttttggcgttgtaatcctggc 82 Query: 82 attctggttggttgtccatgatcatgttgatgcctttgtcgtctctggccaaaacgttac 141 ||||||||||| ||||||| ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct: 83 attctggttggctgtccataatcatgtcgatgcttttgttgtctccggtcaaaatgttac 142 Query: 142 attcttctgggcaagccttgccctagtgctctgctttgcatatccaaagccagagttccc 201 | ||||||||| |||||| | || |||| ||||| ||||||||||| ||||| ||||| Sbjct: 143 aaccttctgggcgagcctttctctgttgctgtgcttcgcatatccaaaaccagaattccc 202 Query: 202 aactcctagctttgaattccacacagcattcaacggggtcgctttcggaattgtctatgg 261 ||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 203 aactcctagctttgaataccacacagcattcaatggggtggcttttggaattgtctatgg 262 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 343 cgggagggtcctggtgggcatcccgaccatcctagccgtgaagtcctgcagcaaggcgct 402 ||||||||| || ||||| ||||| |||||||||| ||||| | |||||| || || || Sbjct: 344 cgggagggttctcgtggggatcccaaccatcctagttgtgaaattctgcagtaaagctct 403 Query: 403 ctcgaaatggctcctgccggtcatgtgcagcaccctggg 441 |||||||||||| || ||||| ||||||| ||||||||| Sbjct: 404 ctcgaaatggcttctaccggtgatgtgcaacaccctggg 442
>gb|BT016586.1| Zea mays clone Contig419 mRNA sequence Length = 1548 Score = 190 bits (96), Expect = 3e-45 Identities = 252/303 (83%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 1 ggcattgcgngggtatacctaggcatgcacagcttgaccgatgttatcgctgggnatctc 60 ||||||||| || |||| || || ||||||||||||||||| ||| | |||||| || Sbjct: 542 ggcattgcgaggatatatctgggtatgcacagcttgaccgacgttgttgctggg-attgg 600 Query: 61 ttttggcatcgtgatccttgcattctggttggttgtccatgatcatgttgatgcctttgt 120 ||| |||| ||| ||||| ||||||||| ||| ||| ||||| ||||| || |||||||| Sbjct: 601 tttcggcaccgtcatcctcgcattctggctggctgttcatgaccatgtcgacgcctttgt 660 Query: 121 cgtctctggccaaaacgttacattcttctgggcaagccttgccctagtgctctgctttgc 180 ||||| || ||||||||| || |||||||||| ||||||| ||| || | |||||||| Sbjct: 661 tgtctccgggcaaaacgttgcaaccttctgggcaggccttgcgctactgatgtgctttgc 720 Query: 181 atatccaaagccagagttcccaactcctagctttgaattccacacagcattcaacggggt 240 ||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 721 gtatcccaagccagaattccctaccccgagctttgaattccacacagcattcaacggggt 780 Query: 241 cgctttcggaattgtctatggcgtccagcagacatacacccgtttccacggccccgacgc 300 |||||||||||| || || ||| ||||||| || ||| || ||||||| ||| ||||| Sbjct: 781 cgctttcggaatcgtgtacggcatccagcaaacctacttccacttccacgccccggacgc 840 Query: 301 gcc 303 ||| Sbjct: 841 gcc 843 Score = 125 bits (63), Expect = 2e-25 Identities = 120/139 (86%) Strand = Plus / Plus Query: 330 tcctcgcgtacgccgggagggtcctggtgggcatcccgaccatcctagccgtgaagtcct 389 ||||||||| ||| ||| | ||||| || || |||||||||||||| |||||||| || | Sbjct: 870 tcctcgcgttcgcggggcgcgtcctcgtcgggatcccgaccatcctggccgtgaaatcgt 929 Query: 390 gcagcaaggcgctctcgaaatggctcctgccggtcatgtgcagcaccctggggatcccga 449 |||||||||||||||| | ||||| ||||| || ||||||||||||||||| ||||| | Sbjct: 930 gcagcaaggcgctctccaggtggctgctgcccgtgatgtgcagcaccctgggcatcccca 989 Query: 450 tcgtctcgtcctgctacgt 468 |||| |||||||||||||| Sbjct: 990 tcgtgtcgtcctgctacgt 1008
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 117 bits (59), Expect = 4e-23 Identities = 98/111 (88%) Strand = Plus / Minus Query: 145 cttctgggcaagccttgccctagtgctctgctttgcatatccaaagccagagttcccaac 204 ||||||||| |||||| | || |||| ||||| ||||||||||| ||||| |||||||| Sbjct: 33324506 cttctgggcgagcctttctctgttgctgtgcttcgcatatccaaaaccagaattcccaac 33324447 Query: 205 tcctagctttgaattccacacagcattcaacggggtcgctttcggaattgt 255 |||||||||||||| ||||||||||||||| ||||| ||||| |||||||| Sbjct: 33324446 tcctagctttgaataccacacagcattcaatggggtggcttttggaattgt 33324396 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/114 (85%), Gaps = 1/114 (0%) Strand = Plus / Minus Query: 22 ggcatgcacagcttgaccgatgttatcgctgggnatctcttttggcatcgtgatccttgc 81 |||||||||||||||| |||||||| ||||| |||| ||||||| | || ||||| || Sbjct: 33324711 ggcatgcacagcttgattgatgttattgctgg-catctgttttggcgttgtaatcctggc 33324653 Query: 82 attctggttggttgtccatgatcatgttgatgcctttgtcgtctctggccaaaa 135 ||||||||||| ||||||| ||||||| ||||| ||||| ||||| || ||||| Sbjct: 33324652 attctggttggctgtccataatcatgtcgatgcttttgttgtctccggtcaaaa 33324599 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Minus Query: 343 cgggagggtcctggtgggcatcccgaccatcctagccgtgaagtcctgcagcaaggcgct 402 ||||||||| || ||||| ||||| |||||||||| ||||| | |||||| || || || Sbjct: 33324082 cgggagggttctcgtggggatcccaaccatcctagttgtgaaattctgcagtaaagctct 33324023 Query: 403 ctcgaaatggctcctgccggtcatgtgcagcaccctggg 441 |||||||||||| || ||||| ||||||| ||||||||| Sbjct: 33324022 ctcgaaatggcttctaccggtgatgtgcaacaccctggg 33323984
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 117 bits (59), Expect = 4e-23 Identities = 98/111 (88%) Strand = Plus / Minus Query: 145 cttctgggcaagccttgccctagtgctctgctttgcatatccaaagccagagttcccaac 204 ||||||||| |||||| | || |||| ||||| ||||||||||| ||||| |||||||| Sbjct: 81022 cttctgggcgagcctttctctgttgctgtgcttcgcatatccaaaaccagaattcccaac 80963 Query: 205 tcctagctttgaattccacacagcattcaacggggtcgctttcggaattgt 255 |||||||||||||| ||||||||||||||| ||||| ||||| |||||||| Sbjct: 80962 tcctagctttgaataccacacagcattcaatggggtggcttttggaattgt 80912 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/114 (85%), Gaps = 1/114 (0%) Strand = Plus / Minus Query: 22 ggcatgcacagcttgaccgatgttatcgctgggnatctcttttggcatcgtgatccttgc 81 |||||||||||||||| |||||||| ||||| |||| ||||||| | || ||||| || Sbjct: 81227 ggcatgcacagcttgattgatgttattgctgg-catctgttttggcgttgtaatcctggc 81169 Query: 82 attctggttggttgtccatgatcatgttgatgcctttgtcgtctctggccaaaa 135 ||||||||||| ||||||| ||||||| ||||| ||||| ||||| || ||||| Sbjct: 81168 attctggttggctgtccataatcatgtcgatgcttttgttgtctccggtcaaaa 81115 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Minus Query: 343 cgggagggtcctggtgggcatcccgaccatcctagccgtgaagtcctgcagcaaggcgct 402 ||||||||| || ||||| ||||| |||||||||| ||||| | |||||| || || || Sbjct: 80598 cgggagggttctcgtggggatcccaaccatcctagttgtgaaattctgcagtaaagctct 80539 Query: 403 ctcgaaatggctcctgccggtcatgtgcagcaccctggg 441 |||||||||||| || ||||| ||||||| ||||||||| Sbjct: 80538 ctcgaaatggcttctaccggtgatgtgcaacaccctggg 80500
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 117 bits (59), Expect = 4e-23 Identities = 98/111 (88%) Strand = Plus / Minus Query: 145 cttctgggcaagccttgccctagtgctctgctttgcatatccaaagccagagttcccaac 204 ||||||||| |||||| | || |||| ||||| ||||||||||| ||||| |||||||| Sbjct: 33415016 cttctgggcgagcctttctctgttgctgtgcttcgcatatccaaaaccagaattcccaac 33414957 Query: 205 tcctagctttgaattccacacagcattcaacggggtcgctttcggaattgt 255 |||||||||||||| ||||||||||||||| ||||| ||||| |||||||| Sbjct: 33414956 tcctagctttgaataccacacagcattcaatggggtggcttttggaattgt 33414906 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/114 (85%), Gaps = 1/114 (0%) Strand = Plus / Minus Query: 22 ggcatgcacagcttgaccgatgttatcgctgggnatctcttttggcatcgtgatccttgc 81 |||||||||||||||| |||||||| ||||| |||| ||||||| | || ||||| || Sbjct: 33415221 ggcatgcacagcttgattgatgttattgctgg-catctgttttggcgttgtaatcctggc 33415163 Query: 82 attctggttggttgtccatgatcatgttgatgcctttgtcgtctctggccaaaa 135 ||||||||||| ||||||| ||||||| ||||| ||||| ||||| || ||||| Sbjct: 33415162 attctggttggctgtccataatcatgtcgatgcttttgttgtctccggtcaaaa 33415109 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Minus Query: 343 cgggagggtcctggtgggcatcccgaccatcctagccgtgaagtcctgcagcaaggcgct 402 ||||||||| || ||||| ||||| |||||||||| ||||| | |||||| || || || Sbjct: 33414592 cgggagggttctcgtggggatcccaaccatcctagttgtgaaattctgcagtaaagctct 33414533 Query: 403 ctcgaaatggctcctgccggtcatgtgcagcaccctggg 441 |||||||||||| || ||||| ||||||| ||||||||| Sbjct: 33414532 ctcgaaatggcttctaccggtgatgtgcaacaccctggg 33414494
>ref|NM_115711.2| Arabidopsis thaliana phosphoric ester hydrolase AT3G58490 mRNA, complete cds Length = 1295 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 199 cccaactcctagctttgaattccacacagcattcaacggggt 240 |||||||||||||| || | ||||||||| ||||||||||| Sbjct: 783 cccaactcctagctacgagtaccacacagccttcaacggggt 824
>gb|AC142211.3| Mus musculus BAC clone RP24-501B23 from chromosome 8, complete sequence Length = 175636 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 426 tgtgcagcaccctggggatccc 447 |||||||||||||||||||||| Sbjct: 24906 tgtgcagcaccctggggatccc 24885
>emb|AL137082.1|ATF14P22 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22 Length = 94239 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 199 cccaactcctagctttgaattccacacagcattcaacggggt 240 |||||||||||||| || | ||||||||| ||||||||||| Sbjct: 27997 cccaactcctagctacgagtaccacacagccttcaacggggt 28038
>dbj|AB239190.1| Arabidopsis thaliana AtSPP1 mRNA for sphingosine-1-phosphate phosphatase, complete cds Length = 1251 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 199 cccaactcctagctttgaattccacacagcattcaacggggt 240 |||||||||||||| || | ||||||||| ||||||||||| Sbjct: 783 cccaactcctagctacgagtaccacacagccttcaacggggt 824
>gb|AC163288.4| Mus musculus BAC clone RP23-279M5 from chromosome 8, complete sequence Length = 222867 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 426 tgtgcagcaccctggggatccc 447 |||||||||||||||||||||| Sbjct: 129837 tgtgcagcaccctggggatccc 129816
>ref|XM_960869.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_1240) partial mRNA Length = 1803 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 tacattcttctgggcaagcct 159 ||||||||||||||||||||| Sbjct: 133 tacattcttctgggcaagcct 153
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 tacattcttctgggcaagcct 159 ||||||||||||||||||||| Sbjct: 149136 tacattcttctgggcaagcct 149156
>emb|AL596088.14| Mouse DNA sequence from clone RP23-157O10 on chromosome 11, complete sequence Length = 233204 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 gggagggtcctggtgggcatc 364 ||||||||||||||||||||| Sbjct: 121094 gggagggtcctggtgggcatc 121074
>ref|XM_465002.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1441 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 cggccccgacgcgcccctcattctgagc 316 |||||||||||||||| |||| |||||| Sbjct: 377 cggccccgacgcgcccgtcatcctgagc 404
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cgacgcgcccctcattctga 314 |||||||||||||||||||| Sbjct: 999769 cgacgcgcccctcattctga 999750
>ref|XM_505512.1| Yarrowia lipolytica CLIB122, YALI0F16896g predicted mRNA Length = 1497 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 gaagccgtcaaacagcagctcggg 501 ||||||| |||||||||||||||| Sbjct: 345 gaagccggcaaacagcagctcggg 322
>emb|AL732594.5| Mouse DNA sequence from clone RP24-189G18 on chromosome 4 Contains the Prpf4 gene for PRP4 pre-mRNA processing factor 4 homolog (yeast), three novel genes, the Bspry gene for B-box and SPRY domain containing protein, the Alad gene for delta aminolevulinate dehydratase, the Pole3 gene for polymerase (DNA directed) epsilon 3 (p17 subunit) and three CpG islands, complete sequence Length = 145776 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gatgcctttgtcgtctctgg 129 |||||||||||||||||||| Sbjct: 85217 gatgcctttgtcgtctctgg 85236
>gb|AC183494.1| Brassica oleracea Contig C, complete sequence Length = 285752 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ggcgacaagccggacgatgc 519 |||||||||||||||||||| Sbjct: 108159 ggcgacaagccggacgatgc 108178
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 289 cggccccgacgcgcccctcattctgagc 316 |||||||||||||||| |||| |||||| Sbjct: 10861584 cggccccgacgcgcccgtcatcctgagc 10861557
>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence Length = 158692 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ctttgaattccacacagcat 230 |||||||||||||||||||| Sbjct: 95736 ctttgaattccacacagcat 95717
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 289 cggccccgacgcgcccctcattctgagc 316 |||||||||||||||| |||| |||||| Sbjct: 67783 cggccccgacgcgcccgtcatcctgagc 67756
>dbj|AK109705.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G04, full insert sequence Length = 1441 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 cggccccgacgcgcccctcattctgagc 316 |||||||||||||||| |||| |||||| Sbjct: 377 cggccccgacgcgcccgtcatcctgagc 404
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 gaagccgtcaaacagcagctcggg 501 ||||||| |||||||||||||||| Sbjct: 2261914 gaagccggcaaacagcagctcggg 2261937 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,168,605 Number of Sequences: 3902068 Number of extensions: 3168605 Number of successful extensions: 54503 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54370 Number of HSP's gapped (non-prelim): 125 length of query: 541 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 518 effective length of database: 17,143,297,704 effective search space: 8880228210672 effective search space used: 8880228210672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)