Clone Name
basdp23
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AY106037.1| Zea mays PCO097164 mRNA sequence
222
8e-55
2 gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome...
155
2e-34
3 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
155
2e-34
4 dbj|AK120040.1| Oryza sativa (japonica cultivar-group) cDNA clon...
155
2e-34
5 dbj|AK101774.1| Oryza sativa (japonica cultivar-group) cDNA clon...
155
2e-34
6 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
155
2e-34
7 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
100
8e-18
8 dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D...
100
8e-18
9 dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic D...
100
8e-18
10 ref|XM_479291.1| Oryza sativa (japonica cultivar-group), mRNA
94
5e-16
11 gb|AC126780.18| Medicago truncatula clone mth2-10n4, complete se...
66
1e-07
12 ref|NM_124317.2| Arabidopsis thaliana nucleic acid binding AT5G4...
58
3e-05
13 gb|BT011657.1| Arabidopsis thaliana At5g49400 mRNA, complete cds
58
3e-05
14 gb|BT010944.1| Arabidopsis thaliana At5g49400 gene, complete cds
58
3e-05
15 dbj|AB023034.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
58
3e-05
16 emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on ch...
48
0.026
17 gb|AC129321.5| Mus musculus BAC clone RP24-160I20 from 8, comple...
46
0.10
18 emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 o...
44
0.41
19 gb|AC165446.16| Medicago truncatula clone mth2-61p21, complete s...
44
0.41
20 gb|AC109195.27| Mus musculus chromosome 15, clone RP24-212B11, c...
42
1.6
21 gb|AC133286.15| Mus musculus chromosome 1, clone RP24-358J4, com...
42
1.6
22 gb|AC101684.13| Mus musculus chromosome 1, clone RP23-187I13, co...
42
1.6
23 gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, com...
42
1.6
24 gb|AC163015.4| Mus musculus chromosome 3, clone RP23-149I5, comp...
42
1.6
25 gb|AC139847.3| Mus musculus BAC clone RP23-387P21 from chromosom...
42
1.6
26 gb|AC161442.5| Mus musculus chromosome 5, clone RP23-384P12, com...
42
1.6
27 gb|AC131684.4| Mus musculus BAC clone RP23-371K6 from chromosome...
42
1.6
28 emb|AL512663.4| Human DNA sequence from clone RP11-356H7 on chro...
42
1.6
29 gb|AC124926.7| Rattus norvegicus X BAC CH230-155H3 (Children's H...
42
1.6
30 emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete se...
42
1.6
31 emb|AL663097.14| Mouse DNA sequence from clone RP23-75I15 on chr...
42
1.6
32 gb|AC104072.3| Homo sapiens BAC clone RP11-320H14 from 4, comple...
42
1.6
33 ref|XM_695983.1| PREDICTED: Danio rerio similar to RNA binding m...
42
1.6
34 ref|XM_627576.1| Cryptosporidium parvum Iowa II Fun12p GTpase; t...
42
1.6
35 gb|DQ350710.1| Ajellomyces capsulatus nitrosative stress induced...
42
1.6
36 gb|AC093745.3| Homo sapiens BAC clone RP11-25B15 from 4, complet...
42
1.6
37 gb|AC117390.3| Homo sapiens 3 BAC RP11-35D21 (Roswell Park Cance...
42
1.6
38 ref|XM_238346.3| PREDICTED: Rattus norvegicus coiled-coil-helix-...
42
1.6
39 gb|AC132216.7| Homo sapiens chromosome 11, clone RP13-786C16, co...
42
1.6
40 gb|U88346.1|HSU88346 Human chromosome 19 nuclear matrix attachme...
42
1.6
41 gb|AC162280.4| Mus musculus chromosome 3, clone RP24-240C19, com...
42
1.6
42 gb|AC144767.4| Mus musculus BAC clone RP23-82F8 from chromosome ...
40
6.4
43 ref|XM_523209.1| PREDICTED: Pan troglodytes similar to golgin-li...
40
6.4
44 gb|AC116146.14| Mus musculus chromosome 7, clone RP24-168I21, co...
40
6.4
45 gb|AF411059.1| Homo sapiens clone BAC_22608 inducible T-cell co-...
40
6.4
46 gb|AC115818.9| Mus musculus chromosome 1, clone RP23-433A12, com...
40
6.4
47 gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, co...
40
6.4
48 ref|XM_416590.1| PREDICTED: Gallus gallus similar to basic leuci...
40
6.4
49 ref|NM_001038640.1| Homo sapiens golgi autoantigen, golgin subfa...
40
6.4
50 gb|AC026891.3| Mus musculus strain C57BL6/J chromosome 6 clone R...
40
6.4
51 gb|AC140420.4| Mus musculus BAC clone RP24-440F22 from chromosom...
40
6.4
52 gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl...
40
6.4
53 gb|AC164536.5| Mus musculus chromosome 18, clone RP23-425H1, com...
40
6.4
54 gb|AC113262.29| Mus musculus strain 129/Sv clone ct7-518k21 map ...
40
6.4
55 gb|AC183388.3| Pan troglodytes BAC clone CH251-53D20 from chromo...
40
6.4
56 gb|AC124738.5| Mus musculus BAC clone RP23-344C15 from chromosom...
40
6.4
57 gb|AC132244.3| Mus musculus BAC clone RP24-419I10 from chromosom...
40
6.4
58 gb|AC116570.3| Mus musculus BAC clone RP23-93O1 from chromosome ...
40
6.4
59 gb|AC002288.1|HUAC002288 Homo sapiens Chromosome 16 BAC clone CI...
40
6.4
60 gb|AC130451.2| Homo sapiens chromosome 16 clone CTA-249B10, comp...
40
6.4
61 gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome...
40
6.4
62 gb|AC068910.45| Mus musculus strain C57BL/6J chromosome 9 clone ...
40
6.4
63 gb|AC095025.2| Sus scrofa clone RP44-93L12, complete sequence
40
6.4
64 gb|AC116325.5| Mus musculus BAC clone RP23-295K3 from 10, comple...
40
6.4
65 gb|AC123957.4| Mus musculus BAC clone RP23-302N2 from 12, comple...
40
6.4
66 gb|AC099612.6| Mus musculus chromosome 14, clone RP23-381M16, co...
40
6.4
67 ref|XM_662546.1| Cryptosporidium hominis TU502 translation initi...
40
6.4
68 emb|Z93096.1|HS390B3 Human DNA sequence from clone CTA-390B3 on ...
40
6.4
69 emb|AL391358.14| Human DNA sequence from clone RP11-197B12 on ch...
40
6.4
70 emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chr...
40
6.4
71 emb|AL160399.13| Human DNA sequence from clone RP11-161N21 on ch...
40
6.4
72 emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K...
40
6.4
73 emb|AL078600.15|HSJ193N13 Human DNA sequence from clone RP1-193N...
40
6.4
74 gb|AC157787.6| Mus musculus chromosome 1, clone RP23-158A6, comp...
40
6.4
75 gb|AC093176.6| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP...
40
6.4
76 gb|AC131391.2| Homo sapiens chromosome 16 clone RP11-552C15, com...
40
6.4
77 gb|AC163627.4| Mus musculus BAC clone RP23-341E13 from chromosom...
40
6.4
78 gb|AC121799.5| Mus musculus BAC clone RP23-429M22 from chromosom...
40
6.4
79 gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosom...
40
6.4
80 emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ...
40
6.4
81 emb|BX640427.1| Bordetella parapertussis strain 12822, complete ...
40
6.4
82 emb|BX640418.1| Bordetella pertussis strain Tohama I, complete g...
40
6.4
83 gb|AC160113.2| Mus musculus BAC clone RP24-84O12 from chromosome...
40
6.4
84 gb|AC130458.2| Homo sapiens chromosome 16 clone CTA-388D4, compl...
40
6.4
85 emb|BX537142.10| Zebrafish DNA sequence from clone CH211-271D10 ...
40
6.4
86 gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, compl...
40
6.4
87 gb|BC091977.1| Danio rerio cytoskeleton associated protein 5, mR...
40
6.4
88 gb|AC109492.2| Homo sapiens chromosome 5 clone RP11-72L22, compl...
40
6.4
89 ref|XM_937045.1| PREDICTED: Homo sapiens similar to Golgi autoan...
40
6.4
90 ref|XM_930496.1| PREDICTED: Homo sapiens similar to Golgi autoan...
40
6.4
91 ref|XM_934956.1| PREDICTED: Homo sapiens similar to Golgi autoan...
40
6.4
92 ref|XM_370876.3| PREDICTED: Homo sapiens similar to Golgi autoan...
40
6.4
93 ref|XM_934954.1| PREDICTED: Homo sapiens similar to Golgi autoan...
40
6.4
94 ref|XM_496076.2| PREDICTED: Homo sapiens similar to Golgi autoan...
40
6.4
95 ref|XM_934846.1| PREDICTED: Homo sapiens similar to Golgi autoan...
40
6.4
96 gb|AC154817.2| Mus musculus BAC clone RP23-72G6 from chromosome ...
40
6.4
97 dbj|AK046103.1| Mus musculus adult male corpora quadrigemina cDN...
40
6.4
98 emb|BX929848.2| Gallus gallus finished cDNA, clone ChEST334o24
40
6.4
99 gb|AC010437.7|AC010437 Homo sapiens chromosome 5 clone CTD-2217J...
40
6.4
100 gb|AC103831.4| Homo sapiens chromosome 8, clone RP11-1023P17, co...
40
6.4
101 dbj|AP006504.1| Mus musculus genomic DNA, chromosome 4, clone: R...
40
6.4
102 gb|AF263742.1|AF263742 Homo sapiens golgin-like protein (GLP) mR...
40
6.4
103 gb|AC134550.5| Mus musculus BAC clone RP24-272L6 from chromosome...
40
6.4
104 gb|AC009965.9| Homo sapiens BAC clone RP11-388A17 from 2, comple...
40
6.4
105 gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, c...
40
6.4
106 gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone ...
40
6.4
107 gb|AF508798.1| Homo sapiens lactoferrin gene, exons 1 through 6 ...
40
6.4
108 gb|AY156717.1| Homo sapiens lactoferrin gene, exon 1a and partia...
40
6.4
109 gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N1...
40
6.4
110 gb|AC102544.14| Mus musculus chromosome 8, clone RP23-118B13, co...
40
6.4
111 dbj|BS000028.1| Pan troglodytes chromosome 22 clone:PTB-087F19, ...
40
6.4
112 ref|XM_321465.2| Anopheles gambiae str. PEST ENSANGP00000008568 ...
40
6.4
113 gb|U95737.1|HUU95737 Human Chromosome 16 BAC clone CIT987SK-A-38...
40
6.4
114 gb|U84762.1|HSU84762 Human delta lactoferrin gene, 5' non-coding...
40
6.4
115 gb|AY608634.1| Nyctotherus ovalis from Blaberus sp. var. Amsterd...
40
6.4
116 gb|AY608632.1| Nyctotherus ovalis from Blaberus sp. var. Amsterd...
40
6.4
117 gb|AC006238.1|AC006238 Homo sapiens chromosome 18, clone hRPK.47...
40
6.4
118 dbj|AP001667.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
40
6.4
119 gb|AC102562.13| Mus musculus chromosome 18, clone RP23-205H1, co...
40
6.4
120 gb|AC119855.16| Mus musculus chromosome 3, clone RP23-243H19, co...
40
6.4
121 gb|AC102576.7| Mus musculus chromosome 18, clone RP23-243N2, com...
40
6.4
122 gb|AC140454.4| Mus musculus BAC clone RP24-163I14 from 1, comple...
40
6.4
123 gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, comple...
40
6.4
124 emb|AL672103.10| Mouse DNA sequence from clone RP23-375G11 on ch...
40
6.4
125 emb|AL390798.3|CNS06C7P Human chromosome 14 DNA sequence BAC R-2...
40
6.4
126 emb|AL606973.29| Mouse DNA sequence from clone RP23-173D8 on chr...
40
6.4
127 emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chro...
40
6.4
128 gb|AC093305.3| Homo sapiens chromosome 5 clone RP11-711G10, comp...
40
6.4
129 dbj|AP000962.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21...
40
6.4
>gb| AY106037.1 | Zea mays PCO097164 mRNA sequence
Length = 642
Score = 222 bits (112), Expect = 8e-55
Identities = 151/164 (92%)
Strand = Plus / Plus
Query: 4 gctaagggattgagcagggctcaagctgaacgtgcagcggaagctgccgctcgcaatgtc 63
||||||||||| |||||||||||||||||||| || ||| ||||| || ||||||||
Sbjct: 235 gctaagggattaagcagggctcaagctgaacgggctgcgactgctgctgcccgcaatgtg 294
Query: 64 aatgcctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatgcctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaag 354
Query: 124 aggcagatgtatctgatgagtaccgagaaggctgtgaggctggg 167
|| |||||||||||||||||||| |||||||||| || ||||||
Sbjct: 355 agacagatgtatctgatgagtacagagaaggctgcgaagctggg 398
Score = 77.8 bits (39), Expect = 3e-11
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 217 cagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagtctatata 276
|||||||| ||||||| ||| ||||||||||| |||||||| ||||| || || || |||
Sbjct: 454 cagaagtgtttccagcatggtcactggacatatgagtgcaaaaatgagcgggtgtacata 513
Query: 277 tcgcggccctcgaggacggaccagcttaaggacccaaggctgaagaa 323
|| |||||||| || ||| | ||||||||| |||| | |||||||||
Sbjct: 514 tcacggccctcaagaacgcagcagcttaagaaccccaagctgaagaa 560
>gb| AC139170.2 | Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0058P12, complete sequence
Length = 173073
Score = 155 bits (78), Expect = 2e-34
Identities = 153/178 (85%)
Strand = Plus / Plus
Query: 7 aagggattgagcagggctcaagctgaacgtgcagcggaagctgccgctcgcaatgtcaat 66
|||||||||||||| ||||||| || || || || | ||| || || ||||||||||||
Sbjct: 32553 aagggattgagcagaactcaagccgagcgagctgctgcagccgctgcccgcaatgtcaat 32612
Query: 67 gcctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagagg 126
|| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 32613 gcttatgggcagaaagaagagggaccttcgcgctggcaggagaggaaggaggccaagaga 32672
Query: 127 cagatgtatctgatgagtaccgagaaggctgtgaggctgggtgtgagaccaaatgctg 184
|||||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||||
Sbjct: 32673 cagatgtatctgatgagtacagagaaggctgtgatactgggagtgaaaccaaaagctg 32730
Score = 139 bits (70), Expect = 9e-30
Identities = 184/220 (83%), Gaps = 4/220 (1%)
Strand = Plus / Plus
Query: 217 cagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagtctatata 276
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 32772 cagaagtgttttcagcctgggcactggacatacgagtgcaagaacgaacgggtctacatt 32831
Query: 277 tcgcggccctcgaggacggaccagcttaaggacccaaggctgaagaaggcgtggctg--c 334
||||||||||||||||| | ||||| ||| |||| | |||||||||| | ||||| |
Sbjct: 32832 tcgcggccctcgaggacacagcagctcaagaaccccaagctgaagaagac--ggctgctc 32889
Query: 335 cggctccctcccagttcgtgaaccctgatctggagaaggagatggaggaagaaaggaagc 394
| | | ||| |||||| ||| |||||||| |||||||| | ||| || ||||||||||
Sbjct: 32890 ctgtttcctatcagttccagaatcctgatcttgagaaggaaaaggaagaggaaaggaagc 32949
Query: 395 tgacgagagaaaagctgaagaaggagaagtctcagaaaag 434
||| || || |||| ||||||||||||||||| |||||||
Sbjct: 32950 tgatgaaagcaaagttgaagaaggagaagtctgagaaaag 32989
>dbj| AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 155 bits (78), Expect = 2e-34
Identities = 153/178 (85%)
Strand = Plus / Minus
Query: 7 aagggattgagcagggctcaagctgaacgtgcagcggaagctgccgctcgcaatgtcaat 66
|||||||||||||| ||||||| || || || || | ||| || || ||||||||||||
Sbjct: 4962340 aagggattgagcagaactcaagccgagcgagctgctgcagccgctgcccgcaatgtcaat 4962281
Query: 67 gcctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagagg 126
|| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 4962280 gcttatgggcagaaagaagagggaccttcgcgctggcaggagaggaaggaggccaagaga 4962221
Query: 127 cagatgtatctgatgagtaccgagaaggctgtgaggctgggtgtgagaccaaatgctg 184
|||||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||||
Sbjct: 4962220 cagatgtatctgatgagtacagagaaggctgtgatactgggagtgaaaccaaaagctg 4962163
Score = 139 bits (70), Expect = 9e-30
Identities = 184/220 (83%), Gaps = 4/220 (1%)
Strand = Plus / Minus
Query: 217 cagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagtctatata 276
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 4962121 cagaagtgttttcagcctgggcactggacatacgagtgcaagaacgaacgggtctacatt 4962062
Query: 277 tcgcggccctcgaggacggaccagcttaaggacccaaggctgaagaaggcgtggctg--c 334
||||||||||||||||| | ||||| ||| |||| | |||||||||| | ||||| |
Sbjct: 4962061 tcgcggccctcgaggacacagcagctcaagaaccccaagctgaagaagac--ggctgctc 4962004
Query: 335 cggctccctcccagttcgtgaaccctgatctggagaaggagatggaggaagaaaggaagc 394
| | | ||| |||||| ||| |||||||| |||||||| | ||| || ||||||||||
Sbjct: 4962003 ctgtttcctatcagttccagaatcctgatcttgagaaggaaaaggaagaggaaaggaagc 4961944
Query: 395 tgacgagagaaaagctgaagaaggagaagtctcagaaaag 434
||| || || |||| ||||||||||||||||| |||||||
Sbjct: 4961943 tgatgaaagcaaagttgaagaaggagaagtctgagaaaag 4961904
>dbj| AK120040.1 | Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E09, full
insert sequence
Length = 1292
Score = 155 bits (78), Expect = 2e-34
Identities = 153/178 (85%)
Strand = Plus / Plus
Query: 7 aagggattgagcagggctcaagctgaacgtgcagcggaagctgccgctcgcaatgtcaat 66
|||||||||||||| ||||||| || || || || | ||| || || ||||||||||||
Sbjct: 225 aagggattgagcagaactcaagccgagcgagctgctgcagccgctgcccgcaatgtcaat 284
Query: 67 gcctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagagg 126
|| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 285 gcttatgggcagaaagaagagggaccttcgcgctggcaggagaggaaggaggccaagaga 344
Query: 127 cagatgtatctgatgagtaccgagaaggctgtgaggctgggtgtgagaccaaatgctg 184
|||||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||||
Sbjct: 345 cagatgtatctgatgagtacagagaaggctgtgatactgggagtgaaaccaaaagctg 402
Score = 139 bits (70), Expect = 9e-30
Identities = 184/220 (83%), Gaps = 4/220 (1%)
Strand = Plus / Plus
Query: 217 cagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagtctatata 276
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 444 cagaagtgttttcagcctgggcactggacatacgagtgcaagaacgaacgggtctacatt 503
Query: 277 tcgcggccctcgaggacggaccagcttaaggacccaaggctgaagaaggcgtggctg--c 334
||||||||||||||||| | ||||| ||| |||| | |||||||||| | ||||| |
Sbjct: 504 tcgcggccctcgaggacacagcagctcaagaaccccaagctgaagaagac--ggctgctc 561
Query: 335 cggctccctcccagttcgtgaaccctgatctggagaaggagatggaggaagaaaggaagc 394
| | | ||| |||||| ||| |||||||| |||||||| | ||| || ||||||||||
Sbjct: 562 ctgtttcctatcagttccagaatcctgatcttgagaaggaaaaggaagaggaaaggaagc 621
Query: 395 tgacgagagaaaagctgaagaaggagaagtctcagaaaag 434
||| || || |||| ||||||||||||||||| |||||||
Sbjct: 622 tgatgaaagcaaagttgaagaaggagaagtctgagaaaag 661
>dbj| AK101774.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033064L23, full
insert sequence
Length = 1347
Score = 155 bits (78), Expect = 2e-34
Identities = 153/178 (85%)
Strand = Plus / Plus
Query: 7 aagggattgagcagggctcaagctgaacgtgcagcggaagctgccgctcgcaatgtcaat 66
|||||||||||||| ||||||| || || || || | ||| || || ||||||||||||
Sbjct: 226 aagggattgagcagaactcaagccgagcgagctgctgcagccgctgcccgcaatgtcaat 285
Query: 67 gcctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagagg 126
|| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 286 gcttatgggcagaaagaagagggaccttcgcgctggcaggagaggaaggaggccaagaga 345
Query: 127 cagatgtatctgatgagtaccgagaaggctgtgaggctgggtgtgagaccaaatgctg 184
|||||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||||
Sbjct: 346 cagatgtatctgatgagtacagagaaggctgtgatactgggagtgaaaccaaaagctg 403
Score = 139 bits (70), Expect = 9e-30
Identities = 184/220 (83%), Gaps = 4/220 (1%)
Strand = Plus / Plus
Query: 217 cagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagtctatata 276
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 445 cagaagtgttttcagcctgggcactggacatacgagtgcaagaacgaacgggtctacatt 504
Query: 277 tcgcggccctcgaggacggaccagcttaaggacccaaggctgaagaaggcgtggctg--c 334
||||||||||||||||| | ||||| ||| |||| | |||||||||| | ||||| |
Sbjct: 505 tcgcggccctcgaggacacagcagctcaagaaccccaagctgaagaagac--ggctgctc 562
Query: 335 cggctccctcccagttcgtgaaccctgatctggagaaggagatggaggaagaaaggaagc 394
| | | ||| |||||| ||| |||||||| |||||||| | ||| || ||||||||||
Sbjct: 563 ctgtttcctatcagttccagaatcctgatcttgagaaggaaaaggaagaggaaaggaagc 622
Query: 395 tgacgagagaaaagctgaagaaggagaagtctcagaaaag 434
||| || || |||| ||||||||||||||||| |||||||
Sbjct: 623 tgatgaaagcaaagttgaagaaggagaagtctgagaaaag 662
>gb| DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 155 bits (78), Expect = 2e-34
Identities = 153/178 (85%)
Strand = Plus / Minus
Query: 7 aagggattgagcagggctcaagctgaacgtgcagcggaagctgccgctcgcaatgtcaat 66
|||||||||||||| ||||||| || || || || | ||| || || ||||||||||||
Sbjct: 4981124 aagggattgagcagaactcaagccgagcgagctgctgcagccgctgcccgcaatgtcaat 4981065
Query: 67 gcctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagagg 126
|| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 4981064 gcttatgggcagaaagaagagggaccttcgcgctggcaggagaggaaggaggccaagaga 4981005
Query: 127 cagatgtatctgatgagtaccgagaaggctgtgaggctgggtgtgagaccaaatgctg 184
|||||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||||
Sbjct: 4981004 cagatgtatctgatgagtacagagaaggctgtgatactgggagtgaaaccaaaagctg 4980947
Score = 139 bits (70), Expect = 9e-30
Identities = 184/220 (83%), Gaps = 4/220 (1%)
Strand = Plus / Minus
Query: 217 cagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagtctatata 276
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 4980905 cagaagtgttttcagcctgggcactggacatacgagtgcaagaacgaacgggtctacatt 4980846
Query: 277 tcgcggccctcgaggacggaccagcttaaggacccaaggctgaagaaggcgtggctg--c 334
||||||||||||||||| | ||||| ||| |||| | |||||||||| | ||||| |
Sbjct: 4980845 tcgcggccctcgaggacacagcagctcaagaaccccaagctgaagaagac--ggctgctc 4980788
Query: 335 cggctccctcccagttcgtgaaccctgatctggagaaggagatggaggaagaaaggaagc 394
| | | ||| |||||| ||| |||||||| |||||||| | ||| || ||||||||||
Sbjct: 4980787 ctgtttcctatcagttccagaatcctgatcttgagaaggaaaaggaagaggaaaggaagc 4980728
Query: 395 tgacgagagaaaagctgaagaaggagaagtctcagaaaag 434
||| || || |||| ||||||||||||||||| |||||||
Sbjct: 4980727 tgatgaaagcaaagttgaagaaggagaagtctgagaaaag 4980688
>dbj| AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 99.6 bits (50), Expect = 8e-18
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 68 cctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagaggc 127
||||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct: 26607690 cctatgggcagaaggaagagggaccaagccgctggcaggagaggaagaaggctaagtgag 26607749
Query: 128 agatgtatctgatgagtaccgagaaggctg 157
||||||| ||||| ||||| ||||| ||||
Sbjct: 26607750 agatgtacctgattagtacagagaaagctg 26607779
Score = 77.8 bits (39), Expect = 3e-11
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 210 ccaatttcagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagt 269
||||| ||||||||||||||||||||| || ||||||||| ||||||||||||| | ||
Sbjct: 26607835 ccaatgtcagaagtgcttccagcctggtcattggacatactagtgcaagaatgacggggt 26607894
Query: 270 ctatatatcgcggccctcgagga 292
||| |||| |||||||| ||||
Sbjct: 26607895 ctacgtatcccggccctcaagga 26607917
>dbj| AP005292.5 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1340_C08
Length = 192167
Score = 99.6 bits (50), Expect = 8e-18
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 68 cctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagaggc 127
||||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct: 152961 cctatgggcagaaggaagagggaccaagccgctggcaggagaggaagaaggctaagtgag 153020
Query: 128 agatgtatctgatgagtaccgagaaggctg 157
||||||| ||||| ||||| ||||| ||||
Sbjct: 153021 agatgtacctgattagtacagagaaagctg 153050
Score = 77.8 bits (39), Expect = 3e-11
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 210 ccaatttcagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagt 269
||||| ||||||||||||||||||||| || ||||||||| ||||||||||||| | ||
Sbjct: 153106 ccaatgtcagaagtgcttccagcctggtcattggacatactagtgcaagaatgacggggt 153165
Query: 270 ctatatatcgcggccctcgagga 292
||| |||| |||||||| ||||
Sbjct: 153166 ctacgtatcccggccctcaagga 153188
>dbj| AP004671.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0524G08
Length = 146690
Score = 99.6 bits (50), Expect = 8e-18
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 68 cctatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagaggc 127
||||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct: 25294 cctatgggcagaaggaagagggaccaagccgctggcaggagaggaagaaggctaagtgag 25353
Query: 128 agatgtatctgatgagtaccgagaaggctg 157
||||||| ||||| ||||| ||||| ||||
Sbjct: 25354 agatgtacctgattagtacagagaaagctg 25383
Score = 77.8 bits (39), Expect = 3e-11
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 210 ccaatttcagaagtgcttccagcctgggcactggacatacgagtgcaagaatgaacgagt 269
||||| ||||||||||||||||||||| || ||||||||| ||||||||||||| | ||
Sbjct: 25439 ccaatgtcagaagtgcttccagcctggtcattggacatactagtgcaagaatgacggggt 25498
Query: 270 ctatatatcgcggccctcgagga 292
||| |||| |||||||| ||||
Sbjct: 25499 ctacgtatcccggccctcaagga 25521
>ref| XM_479291.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 516
Score = 93.7 bits (47), Expect = 5e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 68 cctatgggcagaaggaagagggaccaagccgctggcaggagaggaag 114
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cctatgggcagaaggaagagggaccaagccgctggcaggagaggaag 173
>gb| AC126780.18 | Medicago truncatula clone mth2-10n4, complete sequence
Length = 139213
Score = 65.9 bits (33), Expect = 1e-07
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 70 tatgggcagaaggaagagggaccaagccgctggcaggagaggaaggaagccaagaggcag 129
||||| ||||||||||| || || ||| | |||||||||| | ||| || |||||||||
Sbjct: 67125 tatggtcagaaggaagaagggcctagcagatggcaggagaaaagggaggcgaagaggcag 67066
Query: 130 atgtatctgatgagtaccgagaaggctgt 158
|||||| |||||||||| ||||| |||||
Sbjct: 67065 atgtatttgatgagtactgagaaagctgt 67037
>ref| NM_124317.2 | Arabidopsis thaliana nucleic acid binding AT5G49400 mRNA, complete
cds
Length = 1100
Score = 58.0 bits (29), Expect = 3e-05
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 121 aagaggcagatgtatctgatgagtaccgagaaggctgtgaggctgggtg 169
||||||||||||||| |||||||||| ||||| ||||| ||||| ||||
Sbjct: 274 aagaggcagatgtatttgatgagtactgagaaagctgtcaggcttggtg 322
>gb| BT011657.1 | Arabidopsis thaliana At5g49400 mRNA, complete cds
Length = 828
Score = 58.0 bits (29), Expect = 3e-05
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 121 aagaggcagatgtatctgatgagtaccgagaaggctgtgaggctgggtg 169
||||||||||||||| |||||||||| ||||| ||||| ||||| ||||
Sbjct: 187 aagaggcagatgtatttgatgagtactgagaaagctgtcaggcttggtg 235
>gb| BT010944.1 | Arabidopsis thaliana At5g49400 gene, complete cds
Length = 992
Score = 58.0 bits (29), Expect = 3e-05
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 121 aagaggcagatgtatctgatgagtaccgagaaggctgtgaggctgggtg 169
||||||||||||||| |||||||||| ||||| ||||| ||||| ||||
Sbjct: 262 aagaggcagatgtatttgatgagtactgagaaagctgtcaggcttggtg 310
>dbj| AB023034.1 | Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7J8
Length = 56963
Score = 58.0 bits (29), Expect = 3e-05
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 121 aagaggcagatgtatctgatgagtaccgagaaggctgtgaggctgggtg 169
||||||||||||||| |||||||||| ||||| ||||| ||||| ||||
Sbjct: 23448 aagaggcagatgtatttgatgagtactgagaaagctgtcaggcttggtg 23496
>emb| CT025692.15 | Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete
sequence
Length = 177741
Score = 48.1 bits (24), Expect = 0.026
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 365 tggagaaggagatggaggaagaaa 388
||||||||||||||||||||||||
Sbjct: 65814 tggagaaggagatggaggaagaaa 65837
>gb| AC129321.5 | Mus musculus BAC clone RP24-160I20 from 8, complete sequence
Length = 198439
Score = 46.1 bits (23), Expect = 0.10
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 369 gaaggagatggaggaagaaagga 391
|||||||||||||||||||||||
Sbjct: 95009 gaaggagatggaggaagaaagga 95031
>emb| AL008720.1 |HS343C1 Human DNA sequence from clone CTA-343C1 on chromosome 22, complete
sequence
Length = 198570
Score = 44.1 bits (22), Expect = 0.41
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 372 ggagatggaggaagaaaggaag 393
||||||||||||||||||||||
Sbjct: 173193 ggagatggaggaagaaaggaag 173214
>gb| AC165446.16 | Medicago truncatula clone mth2-61p21, complete sequence
Length = 135557
Score = 44.1 bits (22), Expect = 0.41
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 105 ggagaggaaggaagccaagagg 126
||||||||||||||||||||||
Sbjct: 126338 ggagaggaaggaagccaagagg 126317
>gb| AC109195.27 | Mus musculus chromosome 15, clone RP24-212B11, complete sequence
Length = 168270
Score = 42.1 bits (21), Expect = 1.6
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaagg 390
||||||||||| |||||||||||||
Sbjct: 98604 ggagaaggagagggaggaagaaagg 98580
>gb| AC133286.15 | Mus musculus chromosome 1, clone RP24-358J4, complete sequence
Length = 169772
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 aatgcctatgggcagaaggaa 84
|||||||||||||||||||||
Sbjct: 24773 aatgcctatgggcagaaggaa 24793
>gb| AC101684.13 | Mus musculus chromosome 1, clone RP23-187I13, complete sequence
Length = 227440
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 aatgcctatgggcagaaggaa 84
|||||||||||||||||||||
Sbjct: 126559 aatgcctatgggcagaaggaa 126579
>gb| AC120867.10 | Mus musculus chromosome 5, clone RP23-91O14, complete sequence
Length = 202878
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggaggaa 384
|||||||||||||||||||||
Sbjct: 1893 ctggagaaggagatggaggaa 1913
>gb| AC163015.4 | Mus musculus chromosome 3, clone RP23-149I5, complete sequence
Length = 200423
Score = 42.1 bits (21), Expect = 1.6
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaagg 390
||||||||||| |||||||||||||
Sbjct: 85901 ggagaaggagaaggaggaagaaagg 85877
>gb| AC139847.3 | Mus musculus BAC clone RP23-387P21 from chromosome 3, complete sequence
Length = 203824
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaaga 386
|||||||||||||||||||||
Sbjct: 109203 ggagaaggagatggaggaaga 109183
>gb| AC161442.5 | Mus musculus chromosome 5, clone RP23-384P12, complete sequence
Length = 174557
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggaggaa 384
|||||||||||||||||||||
Sbjct: 174207 ctggagaaggagatggaggaa 174227
>gb| AC131684.4 | Mus musculus BAC clone RP23-371K6 from chromosome 10, complete sequence
Length = 190874
Score = 42.1 bits (21), Expect = 1.6
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 369 gaaggagatggaggaagaaaggaag 393
|||||||| ||||||||||||||||
Sbjct: 180638 gaaggagagggaggaagaaaggaag 180614
>emb| AL512663.4 | Human DNA sequence from clone RP11-356H7 on chromosome 1, complete
sequence
Length = 75171
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 369 gaaggagatggaggaagaaag 389
|||||||||||||||||||||
Sbjct: 24903 gaaggagatggaggaagaaag 24883
>gb| AC124926.7 | Rattus norvegicus X BAC CH230-155H3 (Children's Hospital Oakland
Research Institute) complete sequence
Length = 217309
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 371 aggagatggaggaagaaagga 391
|||||||||||||||||||||
Sbjct: 20504 aggagatggaggaagaaagga 20524
>emb| BX538351.1 | Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4
Length = 307050
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 gaagaaggagaagtctcagaa 431
|||||||||||||||||||||
Sbjct: 87784 gaagaaggagaagtctcagaa 87804
>emb| AL663097.14 | Mouse DNA sequence from clone RP23-75I15 on chromosome 11 Contains a CpG
island, complete sequence
Length = 107243
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 194 ctgcaactgctgggggccaat 214
|||||||||||||||||||||
Sbjct: 103980 ctgcaactgctgggggccaat 103960
>gb| AC104072.3 | Homo sapiens BAC clone RP11-320H14 from 4, complete sequence
Length = 112494
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 412 aagaaggagaagtctcagaaa 432
|||||||||||||||||||||
Sbjct: 96611 aagaaggagaagtctcagaaa 96631
>ref| XM_695983.1 | PREDICTED: Danio rerio similar to RNA binding motif protein 16
(LOC572283), mRNA
Length = 2584
Score = 42.1 bits (21), Expect = 1.6
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 182 ctgaaccagcttctgcaactgctgg 206
||||||||||| |||||||||||||
Sbjct: 528 ctgaaccagctgctgcaactgctgg 504
>ref| XM_627576.1 | Cryptosporidium parvum Iowa II Fun12p GTpase; translation initiation
factor IF2 (cgd6_2180), partial mRNA
Length = 2691
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 gaagaaggagaagtctcagaa 431
|||||||||||||||||||||
Sbjct: 2268 gaagaaggagaagtctcagaa 2288
>gb| DQ350710.1 | Ajellomyces capsulatus nitrosative stress induced transcription 58
(NIT58) gene, partial sequence
Length = 1723
Score = 42.1 bits (21), Expect = 1.6
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 365 tggagaaggagatggaggaagaaaggaag 393
||||||| ||||||||||||||||||||
Sbjct: 1253 tggagaaaaagatggaggaagaaaggaag 1281
>gb| AC093745.3 | Homo sapiens BAC clone RP11-25B15 from 4, complete sequence
Length = 166191
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 412 aagaaggagaagtctcagaaa 432
|||||||||||||||||||||
Sbjct: 87392 aagaaggagaagtctcagaaa 87412
>gb| AC117390.3 | Homo sapiens 3 BAC RP11-35D21 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 168987
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 221 agtgcttccagcctgggcact 241
|||||||||||||||||||||
Sbjct: 37965 agtgcttccagcctgggcact 37985
>ref| XM_238346.3 | PREDICTED: Rattus norvegicus coiled-coil-helix-coiled-coil-helix
domain containing 3 (predicted) (Chchd3_predicted), mRNA
Length = 1754
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggctgtgaggctgggtgtgag 173
|||||||||||||||||||||
Sbjct: 1503 ggctgtgaggctgggtgtgag 1523
>gb| AC132216.7 | Homo sapiens chromosome 11, clone RP13-786C16, complete sequence
Length = 174373
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 aggctgtgaggctgggtgtga 172
|||||||||||||||||||||
Sbjct: 101511 aggctgtgaggctgggtgtga 101531
>gb| U88346.1 |HSU88346 Human chromosome 19 nuclear matrix attachment region M2H5
Length = 437
Score = 42.1 bits (21), Expect = 1.6
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 369 gaaggagatggaggaagaaaggaag 393
|||||||| ||||||||||||||||
Sbjct: 209 gaaggagaaggaggaagaaaggaag 185
>gb| AC162280.4 | Mus musculus chromosome 3, clone RP24-240C19, complete sequence
Length = 165299
Score = 42.1 bits (21), Expect = 1.6
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 153 ggctgtgaggctgggtgtgagacca 177
||||||||||||||| |||||||||
Sbjct: 119227 ggctgtgaggctgggggtgagacca 119251
>gb| AC144767.4 | Mus musculus BAC clone RP23-82F8 from chromosome 6, complete sequence
Length = 229027
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 367 gagaaggagatggaggaaga 386
||||||||||||||||||||
Sbjct: 53896 gagaaggagatggaggaaga 53877
>ref| XM_523209.1 | PREDICTED: Pan troglodytes similar to golgin-like protein
(LOC467814), mRNA
Length = 1953
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 1295 ctggagaaggagatggagga 1314
>gb| AC116146.14 | Mus musculus chromosome 7, clone RP24-168I21, complete sequence
Length = 130931
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaag 389
||||||||||| ||||||||||||
Sbjct: 48999 ggagaaggagaaggaggaagaaag 48976
>gb| AF411059.1 | Homo sapiens clone BAC_22608 inducible T-cell co-stimulator (ICOS) gene,
complete cds; and endogenous virus HERV-H, complete
sequence
Length = 147538
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 366 ggagaaggagatggaggaagaaag 389
||||||||||| ||||||||||||
Sbjct: 140840 ggagaaggagaaggaggaagaaag 140863
>gb| AC115818.9 | Mus musculus chromosome 1, clone RP23-433A12, complete sequence
Length = 186895
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 366 ggagaaggagatggaggaagaaag 389
||||||||||| ||||||||||||
Sbjct: 155341 ggagaaggagaaggaggaagaaag 155364
>gb| AC121297.20 | Mus musculus chromosome 1, clone RP23-326H11, complete sequence
Length = 207496
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaag 389
||||||||||| ||||||||||||
Sbjct: 188373 ggagaaggagaaggaggaagaaag 188350
>ref| XM_416590.1 | PREDICTED: Gallus gallus similar to basic leucine zipper nuclear
factor 1 (LOC418371), mRNA
Length = 2535
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 411 gaagaaggagaagtctcagaaaaggaag 438
||||| ||||||||||||||||| ||||
Sbjct: 1215 gaagagggagaagtctcagaaaaagaag 1188
>ref| NM_001038640.1 | Homo sapiens golgi autoantigen, golgin subfamily a, 6 (GOLGA6), mRNA
Length = 3176
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 1534 ctggagaaggagatggagga 1553
>gb| AC026891.3 | Mus musculus strain C57BL6/J chromosome 6 clone RP23-56M2, complete
sequence
Length = 232327
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 369 gaaggagatggaggaagaaa 388
||||||||||||||||||||
Sbjct: 161915 gaaggagatggaggaagaaa 161896
>gb| AC140420.4 | Mus musculus BAC clone RP24-440F22 from chromosome 5, complete sequence
Length = 157377
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 372 ggagatggaggaagaaagga 391
||||||||||||||||||||
Sbjct: 75615 ggagatggaggaagaaagga 75596
>gb| AE016853.1 | Pseudomonas syringae pv. tomato str. DC3000 complete genome
Length = 6397126
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 aaccagcttctgcaactgct 204
||||||||||||||||||||
Sbjct: 2020958 aaccagcttctgcaactgct 2020939
>gb| AC164536.5 | Mus musculus chromosome 18, clone RP23-425H1, complete sequence
Length = 188835
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 223 tgcttccagcctgggcactg 242
||||||||||||||||||||
Sbjct: 36528 tgcttccagcctgggcactg 36547
>gb| AC113262.29 | Mus musculus strain 129/Sv clone ct7-518k21 map 5, complete sequence
Length = 180394
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 372 ggagatggaggaagaaagga 391
||||||||||||||||||||
Sbjct: 170349 ggagatggaggaagaaagga 170368
>gb| AC183388.3 | Pan troglodytes BAC clone CH251-53D20 from chromosome 16, complete
sequence
Length = 161327
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 374 agatggaggaagaaaggaag 393
||||||||||||||||||||
Sbjct: 127843 agatggaggaagaaaggaag 127824
>gb| AC124738.5 | Mus musculus BAC clone RP23-344C15 from chromosome 14, complete sequence
Length = 204590
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 382 gaagaaaggaagctgacgagagaa 405
|||||||||||| |||||||||||
Sbjct: 180462 gaagaaaggaagatgacgagagaa 180439
>gb| AC132244.3 | Mus musculus BAC clone RP24-419I10 from chromosome 14, complete sequence
Length = 185581
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 382 gaagaaaggaagctgacgagagaa 405
|||||||||||| |||||||||||
Sbjct: 136632 gaagaaaggaagatgacgagagaa 136655
>gb| AC116570.3 | Mus musculus BAC clone RP23-93O1 from chromosome 1, complete sequence
Length = 213410
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaag 389
||||||||||| ||||||||||||
Sbjct: 55918 ggagaaggagaaggaggaagaaag 55895
>gb| AC002288.1 |HUAC002288 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-249B10, complete sequence
Length = 213633
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 374 agatggaggaagaaaggaag 393
||||||||||||||||||||
Sbjct: 155292 agatggaggaagaaaggaag 155273
>gb| AC130451.2 | Homo sapiens chromosome 16 clone CTA-249B10, complete sequence
Length = 215866
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 374 agatggaggaagaaaggaag 393
||||||||||||||||||||
Sbjct: 57399 agatggaggaagaaaggaag 57418
>gb| AC124486.4 | Mus musculus BAC clone RP23-451E1 from chromosome 12, complete sequence
Length = 183140
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 ggagcaagtcaaagagcaag 462
||||||||||||||||||||
Sbjct: 181330 ggagcaagtcaaagagcaag 181349
>gb| AC068910.45 | Mus musculus strain C57BL/6J chromosome 9 clone rp23-9g9, complete
sequence
Length = 169984
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 194 ctgcaactgctgggggccaatttc 217
|||||||||||||||| |||||||
Sbjct: 935 ctgcaactgctgggggtcaatttc 958
>gb| AC095025.2 | Sus scrofa clone RP44-93L12, complete sequence
Length = 176757
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 224 gcttccagcctgggcactgg 243
||||||||||||||||||||
Sbjct: 125422 gcttccagcctgggcactgg 125441
>gb| AC116325.5 | Mus musculus BAC clone RP23-295K3 from 10, complete sequence
Length = 196265
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aaggagatggaggaagaaag 389
||||||||||||||||||||
Sbjct: 191273 aaggagatggaggaagaaag 191292
>gb| AC123957.4 | Mus musculus BAC clone RP23-302N2 from 12, complete sequence
Length = 206661
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 ggagcaagtcaaagagcaag 462
||||||||||||||||||||
Sbjct: 26088 ggagcaagtcaaagagcaag 26107
>gb| AC099612.6 | Mus musculus chromosome 14, clone RP23-381M16, complete sequence
Length = 229545
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 373 gagatggaggaagaaaggaa 392
||||||||||||||||||||
Sbjct: 175873 gagatggaggaagaaaggaa 175892
>ref| XM_662546.1 | Cryptosporidium hominis TU502 translation initiation factor if-2,
73082-68138 (Chro.60256) partial mRNA
Length = 1986
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 412 aagaaggagaagtctcagaa 431
||||||||||||||||||||
Sbjct: 1564 aagaaggagaagtctcagaa 1583
>emb| Z93096.1 |HS390B3 Human DNA sequence from clone CTA-390B3 on chromosome 22q12-13,
complete sequence
Length = 92510
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 427 cagaaaaggaaggcaaggagcaag 450
||||| ||||||||||||||||||
Sbjct: 72225 cagaagaggaaggcaaggagcaag 72248
>emb| AL391358.14 | Human DNA sequence from clone RP11-197B12 on chromosome Xq23-24,
complete sequence
Length = 104309
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 365 tggagaaggagatggaggaagaaaggaa 392
|||| ||||||| |||||||||||||||
Sbjct: 24799 tggataaggagaaggaggaagaaaggaa 24826
>emb| AL354692.23 | Human DNA sequence from clone RP11-361M4 on chromosome 9 Contains a novel
pseudogene, complete sequence
Length = 110443
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaaggaag 393
||||||||||| ||||||||| ||||||
Sbjct: 105978 ggagaaggagaaggaggaagagaggaag 105951
>emb| AL160399.13 | Human DNA sequence from clone RP11-161N21 on chromosome 6, complete
sequence
Length = 126595
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 430 aaaaggaaggcaaggagcaa 449
||||||||||||||||||||
Sbjct: 49267 aaaaggaaggcaaggagcaa 49248
>emb| AL049820.23 |HSDJ137K2 Human DNA sequence from clone RP1-137K2 on chromosome 6q25.1-25.3
Contains part of the gene for BRG1-binding protein ELD/OSA1
(p250R KIAA1235) (FLJ00253 FLJ22292), a novel gene and two
CpG islands, complete sequence
Length = 187507
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 411 gaagaaggagaagtctcaga 430
||||||||||||||||||||
Sbjct: 162343 gaagaaggagaagtctcaga 162362
>emb| AL078600.15 |HSJ193N13 Human DNA sequence from clone RP1-193N13 on chromosome 6q21-22.31
Contains the 5' end of the MAN1A1 gene for mannosidase,
alpha, class 1A, member 1 (Man9-mannosidase (MAN9),
HUMM9). Contains a CpG island, complete sequence
Length = 122961
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 374 agatggaggaagaaaggaag 393
||||||||||||||||||||
Sbjct: 14605 agatggaggaagaaaggaag 14624
>gb| AC157787.6 | Mus musculus chromosome 1, clone RP23-158A6, complete sequence
Length = 199981
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaag 389
||||||||||| ||||||||||||
Sbjct: 2734 ggagaaggagaaggaggaagaaag 2711
>gb| AC093176.6 | Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109H11, Complete
Sequence, complete sequence
Length = 192227
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 367 gagaaggagatggaggaaga 386
||||||||||||||||||||
Sbjct: 92130 gagaaggagatggaggaaga 92149
>gb| AC131391.2 | Homo sapiens chromosome 16 clone RP11-552C15, complete sequence
Length = 41511
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 32881 ggaaggcaaggagcaagtca 32900
>gb| AC163627.4 | Mus musculus BAC clone RP23-341E13 from chromosome 6, complete sequence
Length = 191467
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 367 gagaaggagatggaggaaga 386
||||||||||||||||||||
Sbjct: 10109 gagaaggagatggaggaaga 10128
>gb| AC121799.5 | Mus musculus BAC clone RP23-429M22 from chromosome 1, complete sequence
Length = 212595
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 366 ggagaaggagatggaggaagaaaggaag 393
|||||||| |||| ||||||||||||||
Sbjct: 95861 ggagaaggggatgaaggaagaaaggaag 95888
>gb| AC155168.3 | Mus musculus BAC clone RP23-208M17 from chromosome 10, complete
sequence
Length = 174112
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aaggagatggaggaagaaag 389
||||||||||||||||||||
Sbjct: 72531 aaggagatggaggaagaaag 72550
>emb| BX640444.1 | Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
Length = 349008
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 tcaagctgaacgtgcagcgg 43
||||||||||||||||||||
Sbjct: 81439 tcaagctgaacgtgcagcgg 81458
>emb| BX640427.1 | Bordetella parapertussis strain 12822, complete genome; segment 5/14
Length = 348997
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 tcaagctgaacgtgcagcgg 43
||||||||||||||||||||
Sbjct: 4484 tcaagctgaacgtgcagcgg 4503
>emb| BX640418.1 | Bordetella pertussis strain Tohama I, complete genome; segment 8/12
Length = 349346
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 tcaagctgaacgtgcagcgg 43
||||||||||||||||||||
Sbjct: 313340 tcaagctgaacgtgcagcgg 313321
>gb| AC160113.2 | Mus musculus BAC clone RP24-84O12 from chromosome 9, complete sequence
Length = 223852
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 368 agaaggagatggaggaagaa 387
||||||||||||||||||||
Sbjct: 202104 agaaggagatggaggaagaa 202085
>gb| AC130458.2 | Homo sapiens chromosome 16 clone CTA-388D4, complete sequence
Length = 93519
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 82646 ggaaggcaaggagcaagtca 82665
>emb| BX537142.10 | Zebrafish DNA sequence from clone CH211-271D10 in linkage group 16,
complete sequence
Length = 176055
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 444 gagcaagtcaaagagcaaga 463
||||||||||||||||||||
Sbjct: 172542 gagcaagtcaaagagcaaga 172523
>gb| AC098613.2 | Homo sapiens chromosome 3 clone RP11-24F11, complete sequence
Length = 185437
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 101 ggcaggagaggaaggaagcc 120
||||||||||||||||||||
Sbjct: 120249 ggcaggagaggaaggaagcc 120230
>gb| BC091977.1 | Danio rerio cytoskeleton associated protein 5, mRNA (cDNA clone
IMAGE:7143385), partial cds
Length = 1780
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 tggcaggagaggaaggaagc 119
||||||||||||||||||||
Sbjct: 957 tggcaggagaggaaggaagc 976
>gb| AC109492.2 | Homo sapiens chromosome 5 clone RP11-72L22, complete sequence
Length = 131782
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 20669 ggaaggcaaggagcaagtca 20688
>ref| XM_937045.1 | PREDICTED: Homo sapiens similar to Golgi autoantigen, golgin
subfamily A member 6 (Golgin linked to PML) (Golgin-like
protein) (LOC647988), mRNA
Length = 2181
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 1325 ctggagaaggagatggagga 1344
>ref| XM_930496.1 | PREDICTED: Homo sapiens similar to Golgi autoantigen, golgin
subfamily A member 6 (Golgin linked to PML) (Golgin-like
protein), transcript variant 1 (LOC645752), mRNA
Length = 3165
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 1528 ctggagaaggagatggagga 1547
>ref| XM_934956.1 | PREDICTED: Homo sapiens similar to Golgi autoantigen, golgin
subfamily A member 6 (Golgin linked to PML) (Golgin-like
protein), transcript variant 2 (LOC653643), mRNA
Length = 1116
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 260 ctggagaaggagatggagga 279
>ref| XM_370876.3 | PREDICTED: Homo sapiens similar to Golgi autoantigen, golgin
subfamily A member 6 (Golgin linked to PML) (Golgin-like
protein), transcript variant 1 (LOC653643), mRNA
Length = 3166
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 1528 ctggagaaggagatggagga 1547
>ref| XM_934954.1 | PREDICTED: Homo sapiens similar to Golgi autoantigen, golgin
subfamily A member 6 (Golgin linked to PML) (Golgin-like
protein), transcript variant 2 (LOC653641), mRNA
Length = 1113
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 260 ctggagaaggagatggagga 279
>ref| XM_496076.2 | PREDICTED: Homo sapiens similar to Golgi autoantigen, golgin
subfamily A member 6 (Golgin linked to PML) (Golgin-like
protein), transcript variant 1 (LOC653641), mRNA
Length = 3161
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 1528 ctggagaaggagatggagga 1547
>ref| XM_934846.1 | PREDICTED: Homo sapiens similar to Golgi autoantigen, golgin
subfamily A member 6 (Golgin linked to PML) (Golgin-like
protein), transcript variant 2 (LOC653625), mRNA
Length = 1116
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 260 ctggagaaggagatggagga 279
>gb| AC154817.2 | Mus musculus BAC clone RP23-72G6 from chromosome 13, complete sequence
Length = 143739
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 73 gggcagaaggaagagggacc 92
||||||||||||||||||||
Sbjct: 67675 gggcagaaggaagagggacc 67656
>dbj| AK046103.1 | Mus musculus adult male corpora quadrigemina cDNA, RIKEN
full-length enriched library, clone:B230341P19
product:unclassifiable, full insert sequence
Length = 3719
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 382 gaagaaaggaagctgacgagagaa 405
|||||||||||| |||||||||||
Sbjct: 79 gaagaaaggaagatgacgagagaa 102
>emb| BX929848.2 | Gallus gallus finished cDNA, clone ChEST334o24
Length = 2161
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 411 gaagaaggagaagtctcagaaaaggaag 438
||||| ||||||||||||||||| ||||
Sbjct: 840 gaagagggagaagtctcagaaaaagaag 813
>gb| AC010437.7 |AC010437 Homo sapiens chromosome 5 clone CTD-2217J21, complete sequence
Length = 103696
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 441 aaggagcaagtcaaagagcaagaggaaa 468
|||||| ||||||||||||| |||||||
Sbjct: 66131 aaggagtaagtcaaagagcatgaggaaa 66104
>gb| AC103831.4 | Homo sapiens chromosome 8, clone RP11-1023P17, complete sequence
Length = 206357
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 379 gaggaagaaaggaagctgac 398
||||||||||||||||||||
Sbjct: 143025 gaggaagaaaggaagctgac 143006
>dbj| AP006504.1 | Mus musculus genomic DNA, chromosome 4, clone: RP23-100M2, complete
sequence
Length = 209271
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 423 gtctcagaaaaggaaggcaaggag 446
||||||||||||||||| ||||||
Sbjct: 131050 gtctcagaaaaggaagggaaggag 131073
>gb| AF263742.1 |AF263742 Homo sapiens golgin-like protein (GLP) mRNA, complete cds
Length = 3178
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 1534 ctggagaaggagatggagga 1553
>gb| AC134550.5 | Mus musculus BAC clone RP24-272L6 from chromosome 3, complete sequence
Length = 164204
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaaggaag 393
||||||||||| |||||||| |||||||
Sbjct: 35344 ggagaaggagagggaggaaggaaggaag 35317
>gb| AC009965.9 | Homo sapiens BAC clone RP11-388A17 from 2, complete sequence
Length = 181700
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaag 389
||||||||||| ||||||||||||
Sbjct: 103582 ggagaaggagaaggaggaagaaag 103559
>gb| AC091043.12 | Homo sapiens chromosome 18, clone RP11-595B24, complete sequence
Length = 208310
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 385 gaaaggaagctgacgagagaaaag 408
|||||||||||||| |||||||||
Sbjct: 72326 gaaaggaagctgactagagaaaag 72349
>gb| AC068904.44 | Mus musculus strain C57BL/6J chromosome 9 clone rp23-221i11, complete
sequence
Length = 186063
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 194 ctgcaactgctgggggccaatttc 217
|||||||||||||||| |||||||
Sbjct: 53030 ctgcaactgctgggggtcaatttc 53053
>gb| AF508798.1 | Homo sapiens lactoferrin gene, exons 1 through 6 and partial cds
Length = 19899
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 101 ggcaggagaggaaggaagcc 120
||||||||||||||||||||
Sbjct: 10482 ggcaggagaggaaggaagcc 10501
>gb| AY156717.1 | Homo sapiens lactoferrin gene, exon 1a and partial cds; delta
lactoferrin gene, exon 1b and 5' UTR, partial sequence
Length = 1457
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 101 ggcaggagaggaaggaagcc 120
||||||||||||||||||||
Sbjct: 1183 ggcaggagaggaaggaagcc 1202
>gb| AC008394.3 |AC008394 Homo sapiens chromosome 5 clone CTC_242N15, complete sequence
Length = 171545
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 114399 ggaaggcaaggagcaagtca 114418
>gb| AC102544.14 | Mus musculus chromosome 8, clone RP23-118B13, complete sequence
Length = 224946
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 atgggcagaaggaagaggga 90
||||||||||||||||||||
Sbjct: 118957 atgggcagaaggaagaggga 118938
>dbj| BS000028.1 | Pan troglodytes chromosome 22 clone:PTB-087F19, map 22, complete
sequences
Length = 223409
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 15569 ggaaggcaaggagcaagtca 15550
>ref| XM_321465.2 | Anopheles gambiae str. PEST ENSANGP00000008568 (ENSANGG00000006459),
partial mRNA
Length = 1200
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 ctggagaaggagatggagga 383
||||||||||||||||||||
Sbjct: 1126 ctggagaaggagatggagga 1145
>gb| U95737.1 |HUU95737 Human Chromosome 16 BAC clone CIT987SK-A-388D4, complete sequence
Length = 93431
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 82558 ggaaggcaaggagcaagtca 82577
>gb| U84762.1 |HSU84762 Human delta lactoferrin gene, 5' non-coding region
Length = 463
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 101 ggcaggagaggaaggaagcc 120
||||||||||||||||||||
Sbjct: 186 ggcaggagaggaaggaagcc 205
>gb| AY608634.1 | Nyctotherus ovalis from Blaberus sp. var. Amsterdam hydrogenosomal
NADH dehydrogenase 51 kDa subunit mRNA, partial cds;
nuclear gene for hydrogenosomal product
Length = 331
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 175 ccaaatgctgaaccagcttc 194
||||||||||||||||||||
Sbjct: 231 ccaaatgctgaaccagcttc 212
>gb| AY608632.1 | Nyctotherus ovalis from Blaberus sp. var. Amsterdam hydrogenosomal
NADH dehydrogenase 51 kDa subunit gene, complete cds;
nuclear gene for hydrogenosomal product
Length = 1643
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 175 ccaaatgctgaaccagcttc 194
||||||||||||||||||||
Sbjct: 1184 ccaaatgctgaaccagcttc 1165
>gb| AC006238.1 |AC006238 Homo sapiens chromosome 18, clone hRPK.474_N_24, complete sequence
Length = 211945
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 132978 ggaaggcaaggagcaagtca 132959
>dbj| AP001667.1 | Homo sapiens genomic DNA, chromosome 21q, section 11/105
Length = 340000
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 111750 ggaaggcaaggagcaagtca 111731
>gb| AC102562.13 | Mus musculus chromosome 18, clone RP23-205H1, complete sequence
Length = 210975
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 223 tgcttccagcctgggcactg 242
||||||||||||||||||||
Sbjct: 8700 tgcttccagcctgggcactg 8681
>gb| AC119855.16 | Mus musculus chromosome 3, clone RP23-243H19, complete sequence
Length = 196477
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 366 ggagaaggagatggaggaagaaaggaag 393
||||||||||| |||||||| |||||||
Sbjct: 17412 ggagaaggagagggaggaaggaaggaag 17439
>gb| AC102576.7 | Mus musculus chromosome 18, clone RP23-243N2, complete sequence
Length = 162186
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 368 agaaggagatggaggaagaa 387
||||||||||||||||||||
Sbjct: 49924 agaaggagatggaggaagaa 49943
>gb| AC140454.4 | Mus musculus BAC clone RP24-163I14 from 1, complete sequence
Length = 171533
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 375 gatggaggaagaaaggaagc 394
||||||||||||||||||||
Sbjct: 87035 gatggaggaagaaaggaagc 87016
>gb| AC122293.3 | Mus musculus BAC clone RP23-257O9 from 10, complete sequence
Length = 209942
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 375 gatggaggaagaaaggaagc 394
||||||||||||||||||||
Sbjct: 121838 gatggaggaagaaaggaagc 121819
>emb| AL672103.10 | Mouse DNA sequence from clone RP23-375G11 on chromosome X, complete
sequence
Length = 196568
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 426 tcagaaaaggaaggcaagga 445
||||||||||||||||||||
Sbjct: 61660 tcagaaaaggaaggcaagga 61679
>emb| AL390798.3 |CNS06C7P Human chromosome 14 DNA sequence BAC R-21O19 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 154140
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 366 ggagaaggagatggaggaagaaaggaag 393
||||||||||| |||||||| |||||||
Sbjct: 42697 ggagaaggagaaggaggaaggaaggaag 42670
>emb| AL606973.29 | Mouse DNA sequence from clone RP23-173D8 on chromosome 4, complete
sequence
Length = 243369
Score = 40.1 bits (20), Expect = 6.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 423 gtctcagaaaaggaaggcaaggag 446
||||||||||||||||| ||||||
Sbjct: 71454 gtctcagaaaaggaagggaaggag 71477
>emb| AL928575.7 | Mouse DNA sequence from clone RP23-37A11 on chromosome 2, complete
sequence
Length = 167375
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 399 gagagaaaagctgaagaagg 418
||||||||||||||||||||
Sbjct: 84266 gagagaaaagctgaagaagg 84247
>gb| AC093305.3 | Homo sapiens chromosome 5 clone RP11-711G10, complete sequence
Length = 171196
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 441 aaggagcaagtcaaagagcaagaggaaa 468
|||||| ||||||||||||| |||||||
Sbjct: 26673 aaggagtaagtcaaagagcatgaggaaa 26646
>dbj| AP000962.2 | Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B821P16,
LL56-APP region, complete sequence
Length = 185300
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 434 ggaaggcaaggagcaagtca 453
||||||||||||||||||||
Sbjct: 43294 ggaaggcaaggagcaagtca 43275
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,482,189
Number of Sequences: 3902068
Number of extensions: 6482189
Number of successful extensions: 172866
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 172375
Number of HSP's gapped (non-prelim): 486
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)