>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 192 HGEPRPAPRHGRGSLTTKARSGLDRSTPRSLPHCSLPMPKSNSTTIHPDRQISPLS 25
           H  P P  R+  G+  +  R+G+D S P+ +    +P+P   S+  H    + P+S
Sbjct: 520 HRNPSPGMRYMNGA--SNGRNGMDSSVPQGILPPIIPLPIDASSISHQKAPLLPIS 573

>OSBL5_HUMAN (Q9H0X9) Oxysterol-binding protein-related protein 5 (OSBP-related|
           protein 5) (ORP-5)
          Length = 879

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 135 RSGLDRSTPRSLPH--CSLPMPKSNSTTIHPDRQISPLSGSS*E 10
           R G   ++P + P   C LP     S T+HPD+ + PL+GSS E
Sbjct: 257 RDGEPGTSPDASPSSLCGLPA----SATVHPDQDLFPLNGSSLE 296

>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
 Frame = -1

Query: 198 CSHGEP-------RPAPRHGRGSLTTKARSGLDRSTPRSLPHCSLPMPKSNSTTIHPDRQ 40
           CSH +P       +P+P   R S  +      DR      PH S P   +N    HP  +
Sbjct: 310 CSHADPGAFYLDLQPSPAESRMSCESHHPENGDREEGCGCPHVSSPELDANCNAYHPHSE 369

Query: 39  ISP 31
             P
Sbjct: 370 PCP 372

>PFA4_USTMA (Q4PE27) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 4)
          Length = 604

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 121 SIHTTIPPSLLAPHAQ-IELHHDPSRSPNQPPKRVLMR 11
           S+H   PPSLL P     +  HDP   P   PKRV +R
Sbjct: 551 SLHLPHPPSLLDPLPHHFDPPHDPDTQPVNCPKRVSVR 588

>DNBI_TUHV2 (Q9WRL7) Major DNA-binding protein|
          Length = 1193

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 273 GKHMVCSLPSKLCGFAVCTSRRRHGCSHGEPRPAPRHGRG 154
           G+H++ S  +KLC  +VC  R        + RP PR G+G
Sbjct: 748 GRHVLLSTETKLCKLSVCMLR----TCRVKNRPIPRGGKG 783

>DACH2_HUMAN (Q96NX9) Dachshund homolog 2 (Dach2)|
          Length = 599

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 140 LVVNEPRPCRGAGRGSPWEHPCRRRDVQTAKPQS-LLGSEQTICFPQPEDM 289
           +V N      G GRG+   + CR  D+   K  S L+  ++ IC PQ  D+
Sbjct: 47  VVNNHSNSAGGGGRGNTNTNECRMVDMHGMKVASFLMDGQELICLPQVFDL 97

>FINC_MOUSE (P11276) Fibronectin precursor (FN)|
          Length = 2477

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +2

Query: 164 CRGAGRGSPWEHPCRRRDVQTAKPQSLLGSEQTICFPQPEDMIYAATSGLCVTSAG 331
           C G GRG   E  C R  +Q+A   S   ++      QP+     A  G CVT +G
Sbjct: 261 CTGNGRG---EWKCERHALQSASAGSGSFTDVRTAIYQPQTHPQPAPYGHCVTDSG 313

>YKR4_EBV (P30117) Hypothetical protein BKRF4|
          Length = 217

 Score = 24.6 bits (52), Expect(2) = 8.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 216 SRRRHGCSHGEPRPAPRHGRGSLTTKARSGLDRSTPRSLPH 94
           SR R       P PAP  GR S   +  + + +ST    PH
Sbjct: 131 SRPRTRAPPRPPAPAPVRGRASAPPRPPAPVQQSTKDKGPH 171



 Score = 22.7 bits (47), Expect(2) = 8.8
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 116 PHHDPSLTARSPCPNRTPPRS 54
           PH       R P P R PP S
Sbjct: 170 PHRPTRPVLRGPAPRRPPPPS 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,144,913
Number of Sequences: 219361
Number of extensions: 1668294
Number of successful extensions: 4870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4868
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)