Clone Name | basdo17 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 299 bits (151), Expect = 4e-78 Identities = 295/343 (86%) Strand = Plus / Plus Query: 4 atcaccggtagcggaatgccaggagcctgcaaccccgctggagttggtccgcctcctcgc 63 |||||||| || ||||||||||||||| | || || |||||||||||||| || |||||| Sbjct: 2802677 atcaccggcagtggaatgccaggagccagtaatccagctggagttggtccaccccctcgc 2802736 Query: 64 cttgatcatgttgccgtgagcctacccggagggagaattatgatatttggtggctctgta 123 ||||| ||||| || |||||||| || |||||||||||| ||||||||||||| || || Sbjct: 2802737 cttgaccatgtcgctgtgagccttcctggagggagaattttgatatttggtggatcagtg 2802796 Query: 124 gcaggtcttcattccgcctcacagctttacctcctggatccgaccgaagagaaacctacc 183 ||||||||||| ||||| ||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 2802797 gcaggtcttcactccgcttcaaagctttacctgctggatccgactgaagagaagcctacc 2802856 Query: 184 tggagaatactgaacgttccagggcgccctccaaggtttgcctggggacacagtacctgt 243 ||||| |||||||| ||||| || |||||||| | ||||||||||| |||||||||||| Sbjct: 2802857 tggaggatactgaatgttcctggccgccctccgcgatttgcctggggccacagtacctgt 2802916 Query: 244 gtcatggaaggatcaaaggcaatagttcttggaggacaaaccggagaggagtggacgctg 303 || ||| ||| ||||||| |||||||||||||||||||| |||||||||||||| || Sbjct: 2802917 gttgtgggaggtacaaaggcgatagttcttggaggacaaactggagaggagtggacacta 2802976 Query: 304 actgaaattcatgaactctctctggcgagctcattagtttgag 346 |||||| | ||||| || ||||||| ||||| ||||| |||| Sbjct: 2802977 actgaactgcatgagctttctctggtaagctctttagtctgag 2803019
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 299 bits (151), Expect = 4e-78 Identities = 295/343 (86%) Strand = Plus / Plus Query: 4 atcaccggtagcggaatgccaggagcctgcaaccccgctggagttggtccgcctcctcgc 63 |||||||| || ||||||||||||||| | || || |||||||||||||| || |||||| Sbjct: 70905 atcaccggcagtggaatgccaggagccagtaatccagctggagttggtccaccccctcgc 70964 Query: 64 cttgatcatgttgccgtgagcctacccggagggagaattatgatatttggtggctctgta 123 ||||| ||||| || |||||||| || |||||||||||| ||||||||||||| || || Sbjct: 70965 cttgaccatgtcgctgtgagccttcctggagggagaattttgatatttggtggatcagtg 71024 Query: 124 gcaggtcttcattccgcctcacagctttacctcctggatccgaccgaagagaaacctacc 183 ||||||||||| ||||| ||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 71025 gcaggtcttcactccgcttcaaagctttacctgctggatccgactgaagagaagcctacc 71084 Query: 184 tggagaatactgaacgttccagggcgccctccaaggtttgcctggggacacagtacctgt 243 ||||| |||||||| ||||| || |||||||| | ||||||||||| |||||||||||| Sbjct: 71085 tggaggatactgaatgttcctggccgccctccgcgatttgcctggggccacagtacctgt 71144 Query: 244 gtcatggaaggatcaaaggcaatagttcttggaggacaaaccggagaggagtggacgctg 303 || ||| ||| ||||||| |||||||||||||||||||| |||||||||||||| || Sbjct: 71145 gttgtgggaggtacaaaggcgatagttcttggaggacaaactggagaggagtggacacta 71204 Query: 304 actgaaattcatgaactctctctggcgagctcattagtttgag 346 |||||| | ||||| || ||||||| ||||| ||||| |||| Sbjct: 71205 actgaactgcatgagctttctctggtaagctctttagtctgag 71247
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 218 bits (110), Expect = 1e-53 Identities = 248/294 (84%) Strand = Plus / Minus Query: 5 tcaccggtagcggaatgccaggagcctgcaaccccgctggagttggtccgcctcctcgcc 64 |||||||||| |||||||| || || | || || || |||| |||||| |||||||||| Sbjct: 28586705 tcaccggtagtggaatgcctggggcaggaaatccagccggagctggtccacctcctcgcc 28586646 Query: 65 ttgatcatgttgccgtgagcctacccggagggagaattatgatatttggtggctctgtag 124 ||||||||||||| || ||| |||| || |||||| || ||||||||||||| || || | Sbjct: 28586645 ttgatcatgttgctgtcagcttacctggggggagagttttgatatttggtggatcagtgg 28586586 Query: 125 caggtcttcattccgcctcacagctttacctcctggatccgaccgaagagaaacctacct 184 ||||||||||||| || ||||||||||| ||| ||||||| || ||||| || ||||||| Sbjct: 28586585 caggtcttcattcagcgtcacagctttatctcttggatccaactgaagaaaagcctacct 28586526 Query: 185 ggagaatactgaacgttccagggcgccctccaaggtttgcctggggacacagtacctgtg 244 |||| |||||||| ||||| ||||| || ||| ||||||||||||| ||||| ||||||| Sbjct: 28586525 ggaggatactgaatgttcctgggcgacccccacggtttgcctggggccacagcacctgtg 28586466 Query: 245 tcatggaaggatcaaaggcaatagttcttggaggacaaaccggagaggagtgga 298 | | | |||| |||| |||||||| |||||||||||||| ||||| ||||||| Sbjct: 28586465 ttgttggaggaacaaaagcaatagtgcttggaggacaaactggagaagagtgga 28586412
>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0550B04 Length = 150131 Score = 218 bits (110), Expect = 1e-53 Identities = 248/294 (84%) Strand = Plus / Minus Query: 5 tcaccggtagcggaatgccaggagcctgcaaccccgctggagttggtccgcctcctcgcc 64 |||||||||| |||||||| || || | || || || |||| |||||| |||||||||| Sbjct: 78183 tcaccggtagtggaatgcctggggcaggaaatccagccggagctggtccacctcctcgcc 78124 Query: 65 ttgatcatgttgccgtgagcctacccggagggagaattatgatatttggtggctctgtag 124 ||||||||||||| || ||| |||| || |||||| || ||||||||||||| || || | Sbjct: 78123 ttgatcatgttgctgtcagcttacctggggggagagttttgatatttggtggatcagtgg 78064 Query: 125 caggtcttcattccgcctcacagctttacctcctggatccgaccgaagagaaacctacct 184 ||||||||||||| || ||||||||||| ||| ||||||| || ||||| || ||||||| Sbjct: 78063 caggtcttcattcagcgtcacagctttatctcttggatccaactgaagaaaagcctacct 78004 Query: 185 ggagaatactgaacgttccagggcgccctccaaggtttgcctggggacacagtacctgtg 244 |||| |||||||| ||||| ||||| || ||| ||||||||||||| ||||| ||||||| Sbjct: 78003 ggaggatactgaatgttcctgggcgacccccacggtttgcctggggccacagcacctgtg 77944 Query: 245 tcatggaaggatcaaaggcaatagttcttggaggacaaaccggagaggagtgga 298 | | | |||| |||| |||||||| |||||||||||||| ||||| ||||||| Sbjct: 77943 ttgttggaggaacaaaagcaatagtgcttggaggacaaactggagaagagtgga 77890
>dbj|AK111850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149B02, full insert sequence Length = 2560 Score = 218 bits (110), Expect = 1e-53 Identities = 248/294 (84%) Strand = Plus / Plus Query: 5 tcaccggtagcggaatgccaggagcctgcaaccccgctggagttggtccgcctcctcgcc 64 |||||||||| |||||||| || || | || || || |||| |||||| |||||||||| Sbjct: 1747 tcaccggtagtggaatgcctggggcaggaaatccagccggagctggtccacctcctcgcc 1806 Query: 65 ttgatcatgttgccgtgagcctacccggagggagaattatgatatttggtggctctgtag 124 ||||||||||||| || ||| |||| || |||||| || ||||||||||||| || || | Sbjct: 1807 ttgatcatgttgctgtcagcttacctggggggagagttttgatatttggtggatcagtgg 1866 Query: 125 caggtcttcattccgcctcacagctttacctcctggatccgaccgaagagaaacctacct 184 ||||||||||||| || ||||||||||| ||| ||||||| || ||||| || ||||||| Sbjct: 1867 caggtcttcattcagcgtcacagctttatctcttggatccaactgaagaaaagcctacct 1926 Query: 185 ggagaatactgaacgttccagggcgccctccaaggtttgcctggggacacagtacctgtg 244 |||| |||||||| ||||| ||||| || ||| ||||||||||||| ||||| ||||||| Sbjct: 1927 ggaggatactgaatgttcctgggcgacccccacggtttgcctggggccacagcacctgtg 1986 Query: 245 tcatggaaggatcaaaggcaatagttcttggaggacaaaccggagaggagtgga 298 | | | |||| |||| |||||||| |||||||||||||| ||||| ||||||| Sbjct: 1987 ttgttggaggaacaaaagcaatagtgcttggaggacaaactggagaagagtgga 2040
>gb|AY108178.1| Zea mays PCO103366 mRNA sequence Length = 935 Score = 198 bits (100), Expect = 1e-47 Identities = 238/284 (83%) Strand = Plus / Plus Query: 58 cctcgccttgatcatgttgccgtgagcctacccggagggagaattatgatatttggtggc 117 |||||||| || ||||||| ||||||||| || || |||||| || ||||||||||||| Sbjct: 73 cctcgcctcgaccatgttgtcgtgagccttcctggtgggagagttctgatatttggtggt 132 Query: 118 tctgtagcaggtcttcattccgcctcacagctttacctcctggatccgaccgaagagaaa 177 ||||| || |||||||| || || ||| | ||||||||||||||||| || ||||| || Sbjct: 133 tctgtggcgggtcttcactctgcttcaaaactttacctcctggatccaacggaagataag 192 Query: 178 cctacctggagaatactgaacgttccagggcgccctccaaggtttgcctggggacacagt 237 || |||||||| | ||||| |||||||||| |||||| |||| |||||||| |||||| Sbjct: 193 ccaacctggaggcttctgaatgttccagggcatcctccacggttcgcctggggccacagt 252 Query: 238 acctgtgtcatggaaggatcaaaggcaatagttcttggaggacaaaccggagaggagtgg 297 || ||||| | | ||| |||||||||||||||||||||||||||| ||||| |||||| Sbjct: 253 acttgtgttgtcggagggacaaaggcaatagttcttggaggacaaactggagaagagtgg 312 Query: 298 acgctgactgaaattcatgaactctctctggcgagctcattagt 341 ||||| |||||||| || || || ||||| || ||||||||||| Sbjct: 313 acgctaactgaaatacacgagctttctctagcaagctcattagt 356
>gb|BT017594.1| Zea mays clone EL01N0431A11.c mRNA sequence Length = 1052 Score = 149 bits (75), Expect = 1e-32 Identities = 216/263 (82%) Strand = Plus / Minus Query: 55 cctcctcgccttgatcatgttgccgtgagcctacccggagggagaattatgatatttggt 114 ||||||||||| ||||||||||| |||||||| || || || |||||| |||||||||| Sbjct: 625 cctcctcgcctcgatcatgttgctgtgagcctgccaggcggaagaattttgatatttggc 566 Query: 115 ggctctgtagcaggtcttcattccgcctcacagctttacctcctggatccgaccgaagag 174 ||||| || ||||||||||| || || ||||||||||| || ||||||| || ||||| Sbjct: 565 ggctcagtggcaggtcttcactcagcgtcacagctttatctgttggatccaactgaagaa 506 Query: 175 aaacctacctggagaatactgaacgttccagggcgccctccaaggtttgcctggggacac 234 || || |||||||||||| |||| |||| || || ||||| | || |||||||| ||| Sbjct: 505 aagccgacctggagaatattgaatattcctggtcgtcctccccgtttcgcctggggccac 446 Query: 235 agtacctgtgtcatggaaggatcaaaggcaatagttcttggaggacaaaccggagaggag 294 || |||||||| | | |||| ||||||| ||||| ||||| |||||||| ||||| ||| Sbjct: 445 agcacctgtgttgttggaggaacaaaggcgatagtgcttggtggacaaactggagaagag 386 Query: 295 tggacgctgactgaaattcatga 317 |||| ||| || ||||| ||||| Sbjct: 385 tggatgcttacagaaatacatga 363
>gb|AY104996.1| Zea mays PCO104926 mRNA sequence Length = 600 Score = 127 bits (64), Expect = 4e-26 Identities = 199/244 (81%) Strand = Plus / Plus Query: 55 cctcctcgccttgatcatgttgccgtgagcctacccggagggagaattatgatatttggt 114 ||||||||||| ||||||||||| |||||||| || || || |||||| |||||||||| Sbjct: 300 cctcctcgcctcgatcatgttgctgtgagcctgccaggcggaagaattttgatatttggc 359 Query: 115 ggctctgtagcaggtcttcattccgcctcacagctttacctcctggatccgaccgaagag 174 ||||| || ||||||||||| || || ||||||||||| || ||||||| || ||||| Sbjct: 360 ggctcagtggcaggtcttcactcagcgtcacagctttatctgttggatcccactgaagaa 419 Query: 175 aaacctacctggagaatactgaacgttccagggcgccctccaaggtttgcctggggacac 234 || || |||||||||||| |||| |||| || || ||||| | || ||||| || ||| Sbjct: 420 aagccgacctggagaatattgaatattcctggtcgtcctccccgtttcgcctgtggccac 479 Query: 235 agtacctgtgtcatggaaggatcaaaggcaatagttcttggaggacaaaccggagaggag 294 || |||||||| | | |||| || |||| ||||| ||||| |||||||| ||||| ||| Sbjct: 480 agcacctgtgttgttggaggaacataggcgatagtgcttggtggacaaactggagaagag 539 Query: 295 tgga 298 |||| Sbjct: 540 tgga 543
>gb|AY371290.1| Mesembryanthemum crystallinum ZEITLUPE (ZTL) mRNA, complete cds Length = 2561 Score = 67.9 bits (34), Expect = 3e-08 Identities = 145/182 (79%) Strand = Plus / Plus Query: 64 cttgatcatgttgccgtgagcctacccggagggagaattatgatatttggtggctctgta 123 ||||| |||||||| |||||||| || ||||| ||||| | | |||||||| ||||| Sbjct: 1909 cttgaccatgttgcagtgagcctcccaggaggtagaatcctagtgtttggtggatctgtg 1968 Query: 124 gcaggtcttcattccgcctcacagctttacctcctggatccgaccgaagagaaacctacc 183 || ||||||||||| || |||||||| || || || || || || || |||||||| || Sbjct: 1969 gctggtcttcattcagcttcacagctctatcttcttgacccaactgaggagaaaccaaca 2028 Query: 184 tggagaatactgaacgttccagggcgccctccaaggtttgcctggggacacagtacctgt 243 ||||||||| | || || || || || |||||||| ||||| ||||| || ||||| ||| Sbjct: 2029 tggagaatattaaatgtacctggtcggcctccaagttttgcttgggggcatagtacttgt 2088 Query: 244 gt 245 || Sbjct: 2089 gt 2090
>ref|NM_125119.2| Arabidopsis thaliana ZTL (ZEITLUPE); ubiquitin-protein ligase AT5G57360 (ZTL) mRNA, complete cds Length = 2295 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 1746 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 1805 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 1806 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 1861
>gb|AC156020.2| Mus musculus BAC clone RP23-343A9 from chromosome 16, complete sequence Length = 215559 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 218 ggtttgcctggggacacagtacct 241 |||||||||||||||||||||||| Sbjct: 3735 ggtttgcctggggacacagtacct 3712
>gb|AC138722.3| Mus musculus BAC clone RP23-113B10 from chromosome 16, complete sequence Length = 227299 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 218 ggtttgcctggggacacagtacct 241 |||||||||||||||||||||||| Sbjct: 27675 ggtttgcctggggacacagtacct 27698
>gb|BT008772.1| Arabidopsis thaliana At5g57360/MSF19_2 gene, complete cds Length = 1830 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 1576 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 1635 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 1636 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 1691
>gb|AY039902.1| Arabidopsis thaliana AT5g57360/MSF19_2 mRNA, complete cds Length = 2325 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 1746 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 1805 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 1806 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 1861
>gb|AF252294.1|AF252294 Arabidopsis thaliana Adagio 1 (ADO1) mRNA, complete cds Length = 2289 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 1699 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 1758 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 1759 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 1814
>emb|BX832536.1|CNS0A1M1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH79ZG10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2260 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 1710 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 1769 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 1770 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 1825
>gb|AF254413.1|AF254413 Arabidopsis thaliana clock-associated PAS protein ZTL mRNA, complete cds Length = 2273 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 1692 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 1751 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 1752 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 1807
>gb|AF216525.2|AF216525 Arabidopsis thaliana FKF1-like protein 2 mRNA, complete cds Length = 2303 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 1715 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 1774 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 1775 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 1830
>dbj|AB038796.1| Arabidopsis thaliana LKP1 mRNA for LOV kelch protein 1, complete cds Length = 2297 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 1710 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 1769 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 1770 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 1825
>dbj|AB016891.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSF19 Length = 34508 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 91 ggagggagaattatgatatttggtggctctgtagcaggtcttcattccgcctcacagctt 150 ||||| ||||| |||||||||| ||||| || ||||| ||||| || || || |||||| Sbjct: 9451 ggaggcagaatcttgatatttggcggctcagtggcagggcttcactcagcgtctcagctt 9510 Query: 151 tacctcctggatccgaccgaagagaaacctacctggagaatactgaacgttccagg 206 || || || || || || || || ||||| || ||||||||||| ||| ||||||| Sbjct: 9511 tatctacttgacccaacggaggacaaaccgacttggagaatactaaacattccagg 9566
>gb|AC131979.10| Mus musculus chromosome 16, clone RP24-156L5, complete sequence Length = 156267 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 218 ggtttgcctggggacacagtacct 241 |||||||||||||||||||||||| Sbjct: 18433 ggtttgcctggggacacagtacct 18410
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 146 agctttacctcctggatccgaccgaagagaaacct 180 |||||||||| ||||||||||| ||| |||||||| Sbjct: 15642771 agctttacctgctggatccgactgaacagaaacct 15642737
>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete sequence Length = 178748 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 146 agctttacctcctggatccgaccgaagagaaacct 180 |||||||||| ||||||||||| ||| |||||||| Sbjct: 52725 agctttacctgctggatccgactgaacagaaacct 52691
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 146 agctttacctcctggatccgaccgaagagaaacct 180 |||||||||| ||||||||||| ||| |||||||| Sbjct: 15637305 agctttacctgctggatccgactgaacagaaacct 15637271
>gb|AC175742.5| Mus musculus chromosome 7, clone wi1-437K4, complete sequence Length = 38181 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 atgccaggagcctgcaaccc 38 |||||||||||||||||||| Sbjct: 16760 atgccaggagcctgcaaccc 16779
>ref|XM_715638.1| Candida albicans SC5314 hypothetical protein (CaO19_11771), mRNA Length = 3054 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 gaaggatcaaaggcaatagttctt 273 |||||||||||||||||| ||||| Sbjct: 545 gaaggatcaaaggcaatacttctt 522
>gb|AC079155.7| Homo sapiens BAC clone RP11-372J17 from 7, complete sequence Length = 125372 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gagctcattagtttgagacc 349 |||||||||||||||||||| Sbjct: 100803 gagctcattagtttgagacc 100784
>emb|Z84485.1|HS524E15 Human DNA sequence from clone RP3-524E15 on chromosome 6p21 Contains the BRPF3 gene for bromodomain and PHD finger containing protein 3 and a CpG Island, complete sequence Length = 80908 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tgactgaaattcatgaactc 321 |||||||||||||||||||| Sbjct: 11243 tgactgaaattcatgaactc 11224
>gb|AC068898.8| Homo sapiens chromosome 10 clone RP11-534L6, complete sequence Length = 176188 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 gagctcattagtttgagacc 349 |||||||||||||||||||| Sbjct: 73248 gagctcattagtttgagacc 73267
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 Length = 1913118 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 gtagatgaaagctggctact 461 |||||||||||||||||||| Sbjct: 1379787 gtagatgaaagctggctact 1379806
>gb|AC089995.1|AC089995 Caenorhabditis briggsae cosmid CB035H18, complete sequence Length = 79459 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 300 gctgactgaaattcatgaactctctctg 327 ||||| |||||||||||||||| ||||| Sbjct: 6003 gctgaatgaaattcatgaactcactctg 6030
>emb|AL929552.10| Mouse DNA sequence from clone RP23-207J12 on chromosome 11, complete sequence Length = 84590 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 agtagatgaaagctggctac 460 |||||||||||||||||||| Sbjct: 7158 agtagatgaaagctggctac 7177 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,597,146 Number of Sequences: 3902068 Number of extensions: 3597146 Number of successful extensions: 54711 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 54591 Number of HSP's gapped (non-prelim): 123 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)