Clone Name | basdo07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D11, full insert sequence Length = 1364 Score = 371 bits (187), Expect = 2e-99 Identities = 373/435 (85%) Strand = Plus / Plus Query: 54 cctgttcctgagctaccagccggagcccggcgccaagatgctcgacccggaggtctaccc 113 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 741 cctgttcctcagctaccagccagagcccggcgccaagatgctcgacccggaggtctaccc 800 Query: 114 gcgccccacgggggaggtgtacatctgcggaatgagcaaggacgagcaagttccagatga 173 ||| ||||| |||||||||||||| || ||||||| |||||| ||| | || || ||||| Sbjct: 801 gcggcccaccggggaggtgtacatttgtggaatgaccaaggatgaggaggtgcccgatga 860 Query: 174 tccggcaacgattgccggggagcctgactccattgcaatgcttcataagattgctgggag 233 |||| ||||| |||| ||||| ||||| ||||| ||||| || ||||| || ||||| Sbjct: 861 cccggagacgatcaccggtgagccggactcaattgcgatgctgcacaagatcgccgggag 920 Query: 234 ggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgcta 293 ||| ||| ||||||| |||| ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct: 921 ggtttccggccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgcta 980 Query: 294 cctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaagggatg 353 ||| ||||||||||||||||| ||||||| || ||||| ||||| || |||||||| || Sbjct: 981 cctgccgtgcaccgatgacggtttgccggtgatcggggagatgcctggagtgaagggttg 1040 Query: 354 ctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgcagc 413 ||| || || ||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 1041 ctatgtcgccaccgggcacagctgctgggggatcctcaatgctccagccaccggtgccgc 1100 Query: 414 actcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagccc 473 ||||| |||||||||||||| || | ||||||||||| ||||| ||||| |||||||| Sbjct: 1101 tctcgcagagctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagccc 1160 Query: 474 ggcaagatttctcaa 488 ||||| |||||||| Sbjct: 1161 agcaaggtttctcaa 1175
>gb|AY105159.1| Zea mays PCO075778 mRNA sequence Length = 604 Score = 321 bits (162), Expect = 2e-84 Identities = 354/418 (84%) Strand = Plus / Minus Query: 71 agccggagcccggcgccaagatgctcgacccggaggtctacccgcgccccacgggggagg 130 ||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||| Sbjct: 599 agccggagcccggcgccaagatgctcgaccccgaggtgtacccgcggcccaccggggagg 540 Query: 131 tgtacatctgcggaatgagcaaggacgagcaagttccagatgatccggcaacgattgccg 190 ||||||| || || ||||||||||||||| | |||||||| || |||||||| | | Sbjct: 539 tgtacatatgtgggatgagcaaggacgagaacccgccagatgacccagcaacgatagtag 480 Query: 191 gggagcctgactccattgcaatgcttcataagattgctgggagggtgtccagccagctca 250 | ||||| ||||| ||||||||||| |||||||| || || | |||||||||||||| | Sbjct: 479 gcgagccagactcgattgcaatgctgcataagatcgcaggcaaagtgtccagccagctga 420 Query: 251 agacagaggagggcgcagaggtagtcgcggaacaggcctgctacctcccgtgcaccgatg 310 ||| ||||||||||| ||||| |||||||| ||||| |||||||| |||||||||| | Sbjct: 419 agaaggaggagggcgctgaggtggtcgcggagcaggcgtgctacctgccgtgcaccgccg 360 Query: 311 acgggctgccggtcattggggaaatgcccggggtgaagggatgctacgttgcaaccgggc 370 |||||||||||||||| ||||| || || || ||||| || ||||| || || || || | Sbjct: 359 acgggctgccggtcatcggggagataccaggcgtgaaagggtgctatgtggccacgggcc 300 Query: 371 acagctgctgggggatcctcaatgctccagttaccggtgcagcactcgccgagctcatcc 430 ||||||||||||| |||||||||| ||| | ||||| ||||| |||||||||||||||| Sbjct: 299 acagctgctggggtatcctcaatggtccggccaccggcgcagccctcgccgagctcatcc 240 Query: 431 tcgatgggcaggccaagatcgttgatcttgcgcccttcagcccggcaagatttctcaa 488 | || || || |||||||||||||||| | ||| |||||||||||||| |||||||| Sbjct: 239 tggacggcaagtccaagatcgttgatctcgagcctttcagcccggcaaggtttctcaa 182
>gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence Length = 711 Score = 305 bits (154), Expect = 1e-79 Identities = 397/477 (83%), Gaps = 1/477 (0%) Strand = Plus / Plus Query: 12 gtgctccggccgcgcaaccccgacaagnataacaccgcactgcctgttcctgagctacca 71 ||||||||||||||| | ||||| ||| | || ||||||||||| ||||| |||||||| Sbjct: 177 gtgctccggccgcgcgagcccgagaagg-tcacgccgcactgcctcttcctcagctacca 235 Query: 72 gccggagcccggcgccaagatgctcgacccggaggtctacccgcgccccacgggggaggt 131 |||||||||||||||||||||||||||||| ||||| |||||||| || |||||| Sbjct: 236 gccggagcccggcgccaagatgctcgaccccgaggtgtacccgcggccttttttggaggt 295 Query: 132 gtacatctgcggaatgagcaaggacgagcaagttccagatgatccggcaacgattgccgg 191 |||||| || || |||||| |||| ||| | |||||||| || |||||||| | || Sbjct: 296 gtacatatgtgggatgagctaggaggagaacccgccagatgacccagcaacgatagtagg 355 Query: 192 ggagcctgactccattgcaatgcttcataagattgctgggagggtgtccagccagctcaa 251 ||||| ||||| ||||||||||| |||||||| || || | |||||||||||||| || Sbjct: 356 cgagccagactcgattgcaatgctgcataagatcgcaggcaaagtgtccagccagctgaa 415 Query: 252 gacagaggagggcgcagaggtagtcgcggaacaggcctgctacctcccgtgcaccgatga 311 || ||||||||||| ||||| |||||||| ||||| |||||||| |||||||||| || Sbjct: 416 gaaggaggagggcgctgaggtggtcgcggagcaggcgtgctacctgccgtgcaccgccga 475 Query: 312 cgggctgccggtcattggggaaatgcccggggtgaagggatgctacgttgcaaccgggca 371 ||||||||||||||| ||||| || || || ||||| || ||||| || || || || || Sbjct: 476 cgggctgccggtcatcggggagataccaggcgtgaaagggtgctatgtggccacgggcca 535 Query: 372 cagctgctgggggatcctcaatgctccagttaccggtgcagcactcgccgagctcatcct 431 |||||||||||| |||||||||| ||| | ||||| ||||| ||||||||||||||||| Sbjct: 536 cagctgctggggtatcctcaatggtccggccaccggcgcagccctcgccgagctcatcct 595 Query: 432 cgatgggcaggccaagatcgttgatcttgcgcccttcagcccggcaagatttctcaa 488 || || || |||||||||||||||| | ||| |||||||||||||| |||||||| Sbjct: 596 ggacggcaagtccaagatcgttgatctcgagcctttcagcccggcaaggtttctcaa 652
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 264 bits (133), Expect = 3e-67 Identities = 307/365 (84%) Strand = Plus / Plus Query: 124 ggggaggtgtacatctgcggaatgagcaaggacgagcaagttccagatgatccggcaacg 183 |||||||||||||| || ||||||| |||||| ||| | || || ||||| |||| ||| Sbjct: 2978282 ggggaggtgtacatttgtggaatgaccaaggatgaggaggtgcccgatgacccggagacg 2978341 Query: 184 attgccggggagcctgactccattgcaatgcttcataagattgctgggagggtgtccagc 243 || |||| ||||| ||||| ||||| ||||| || ||||| || |||||||| ||| || Sbjct: 2978342 atcaccggtgagccggactcaattgcgatgctgcacaagatcgccgggagggtttccggc 2978401 Query: 244 cagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgctacctcccgtgc 303 ||||| |||| ||||| ||||| ||||| || ||||| ||||| |||||||| |||||| Sbjct: 2978402 cagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgctacctgccgtgc 2978461 Query: 304 accgatgacgggctgccggtcattggggaaatgcccggggtgaagggatgctacgttgca 363 ||||||||||| ||||||| || ||||| ||||| || |||||||| ||||| || || Sbjct: 2978462 accgatgacggtttgccggtgatcggggagatgcctggagtgaagggttgctatgtcgcc 2978521 Query: 364 accgggcacagctgctgggggatcctcaatgctccagttaccggtgcagcactcgccgag 423 ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||| Sbjct: 2978522 accgggcacagctgctgggggatcctcaatgctccagccaccggtgccgctctcgcagag 2978581 Query: 424 ctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagcccggcaagattt 483 ||||||||||| || | ||||||||||| ||||| ||||| |||||||| ||||| ||| Sbjct: 2978582 ctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagcccagcaaggttt 2978641 Query: 484 ctcaa 488 ||||| Sbjct: 2978642 ctcaa 2978646 Score = 113 bits (57), Expect = 8e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 54 cctgttcctgagctaccagccggagcccggcgccaagatgctcgacccggaggtctaccc 113 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2978119 cctgttcctcagctaccagccagagcccggcgccaagatgctcgacccggaggtctaccc 2978178 Query: 114 gcgccccac 122 ||| ||||| Sbjct: 2978179 gcggcccac 2978187
>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0024L18 Length = 150128 Score = 264 bits (133), Expect = 3e-67 Identities = 307/365 (84%) Strand = Plus / Plus Query: 124 ggggaggtgtacatctgcggaatgagcaaggacgagcaagttccagatgatccggcaacg 183 |||||||||||||| || ||||||| |||||| ||| | || || ||||| |||| ||| Sbjct: 24337 ggggaggtgtacatttgtggaatgaccaaggatgaggaggtgcccgatgacccggagacg 24396 Query: 184 attgccggggagcctgactccattgcaatgcttcataagattgctgggagggtgtccagc 243 || |||| ||||| ||||| ||||| ||||| || ||||| || |||||||| ||| || Sbjct: 24397 atcaccggtgagccggactcaattgcgatgctgcacaagatcgccgggagggtttccggc 24456 Query: 244 cagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgctacctcccgtgc 303 ||||| |||| ||||| ||||| ||||| || ||||| ||||| |||||||| |||||| Sbjct: 24457 cagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgctacctgccgtgc 24516 Query: 304 accgatgacgggctgccggtcattggggaaatgcccggggtgaagggatgctacgttgca 363 ||||||||||| ||||||| || ||||| ||||| || |||||||| ||||| || || Sbjct: 24517 accgatgacggtttgccggtgatcggggagatgcctggagtgaagggttgctatgtcgcc 24576 Query: 364 accgggcacagctgctgggggatcctcaatgctccagttaccggtgcagcactcgccgag 423 ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||| Sbjct: 24577 accgggcacagctgctgggggatcctcaatgctccagccaccggtgccgctctcgcagag 24636 Query: 424 ctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagcccggcaagattt 483 ||||||||||| || | ||||||||||| ||||| ||||| |||||||| ||||| ||| Sbjct: 24637 ctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagcccagcaaggttt 24696 Query: 484 ctcaa 488 ||||| Sbjct: 24697 ctcaa 24701 Score = 113 bits (57), Expect = 8e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 54 cctgttcctgagctaccagccggagcccggcgccaagatgctcgacccggaggtctaccc 113 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 24174 cctgttcctcagctaccagccagagcccggcgccaagatgctcgacccggaggtctaccc 24233 Query: 114 gcgccccac 122 ||| ||||| Sbjct: 24234 gcggcccac 24242
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 135 bits (68), Expect = 2e-28 Identities = 170/204 (83%) Strand = Plus / Minus Query: 229 gggagggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcc 288 |||||||||||||||||||| |||| ||||| ||||| ||||| || ||||| ||||| Sbjct: 23298257 gggagggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggct 23298198 Query: 289 tgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaag 348 |||||| | ||||||||| ||||||| ||||||| || || || ||||| ||||||||| Sbjct: 23298197 tgctacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaag 23298138 Query: 349 ggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggt 408 || |||||||| || ||||||||| || | ||||| |||||||| ||||| | ||||| Sbjct: 23298137 ggttgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggc 23298078 Query: 409 gcagcactcgccgagctcatcctc 432 || || ||||| |||||||||||| Sbjct: 23298077 gctgcgctcgcggagctcatcctc 23298054 Score = 101 bits (51), Expect = 3e-18 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 12 gtgctccggccgcgcaaccccgacaagnataacaccgcactgcctgttcctgagctacca 71 |||||||||||||| | ||||||||| || || |||||| |||||||| |||||||| Sbjct: 23298573 gtgctccggccgcgtgagcccgacaag-atgacgccgcacgcgctgttcctcagctacca 23298515 Query: 72 gccggagcccggcgccaagatgctcgacccggaggtctacccgcgccccac 122 ||||||||||||||||||||||||| ||||||| |||||||||| ||||| Sbjct: 23298514 accggagcccggcgccaagatgctcgccccggagatctacccgcggcccac 23298464
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 135 bits (68), Expect = 2e-28 Identities = 170/204 (83%) Strand = Plus / Minus Query: 229 gggagggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcc 288 |||||||||||||||||||| |||| ||||| ||||| ||||| || ||||| ||||| Sbjct: 23955 gggagggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggct 23896 Query: 289 tgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaag 348 |||||| | ||||||||| ||||||| ||||||| || || || ||||| ||||||||| Sbjct: 23895 tgctacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaag 23836 Query: 349 ggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggt 408 || |||||||| || ||||||||| || | ||||| |||||||| ||||| | ||||| Sbjct: 23835 ggttgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggc 23776 Query: 409 gcagcactcgccgagctcatcctc 432 || || ||||| |||||||||||| Sbjct: 23775 gctgcgctcgcggagctcatcctc 23752 Score = 101 bits (51), Expect = 3e-18 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 12 gtgctccggccgcgcaaccccgacaagnataacaccgcactgcctgttcctgagctacca 71 |||||||||||||| | ||||||||| || || |||||| |||||||| |||||||| Sbjct: 24271 gtgctccggccgcgtgagcccgacaag-atgacgccgcacgcgctgttcctcagctacca 24213 Query: 72 gccggagcccggcgccaagatgctcgacccggaggtctacccgcgccccac 122 ||||||||||||||||||||||||| ||||||| |||||||||| ||||| Sbjct: 24212 accggagcccggcgccaagatgctcgccccggagatctacccgcggcccac 24162
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 135 bits (68), Expect = 2e-28 Identities = 170/204 (83%) Strand = Plus / Minus Query: 229 gggagggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcc 288 |||||||||||||||||||| |||| ||||| ||||| ||||| || ||||| ||||| Sbjct: 84999 gggagggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggct 84940 Query: 289 tgctacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaag 348 |||||| | ||||||||| ||||||| ||||||| || || || ||||| ||||||||| Sbjct: 84939 tgctacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaag 84880 Query: 349 ggatgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggt 408 || |||||||| || ||||||||| || | ||||| |||||||| ||||| | ||||| Sbjct: 84879 ggttgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggc 84820 Query: 409 gcagcactcgccgagctcatcctc 432 || || ||||| |||||||||||| Sbjct: 84819 gctgcgctcgcggagctcatcctc 84796 Score = 101 bits (51), Expect = 3e-18 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 12 gtgctccggccgcgcaaccccgacaagnataacaccgcactgcctgttcctgagctacca 71 |||||||||||||| | ||||||||| || || |||||| |||||||| |||||||| Sbjct: 85315 gtgctccggccgcgtgagcccgacaag-atgacgccgcacgcgctgttcctcagctacca 85257 Query: 72 gccggagcccggcgccaagatgctcgacccggaggtctacccgcgccccac 122 ||||||||||||||||||||||||| ||||||| |||||||||| ||||| Sbjct: 85256 accggagcccggcgccaagatgctcgccccggagatctacccgcggcccac 85206
>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence Length = 230293 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 ggcacagctgctgggggatcctc 390 ||||||||||||||||||||||| Sbjct: 190398 ggcacagctgctgggggatcctc 190376
>dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688I9, complete sequence Length = 175562 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gctcaagacagaggagggcgc 266 ||||||||||||||||||||| Sbjct: 118017 gctcaagacagaggagggcgc 118037
>ref|XM_656096.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3584.2), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cactcgccgagctcatcctc 432 |||||||||||||||||||| Sbjct: 148 cactcgccgagctcatcctc 129
>gb|AC184077.2| Populus trichocarpa clone Pop1-53L15, complete sequence Length = 28233 Score = 40.1 bits (20), Expect = 9.2 Identities = 47/56 (83%) Strand = Plus / Plus Query: 328 ggggaaatgcccggggtgaagggatgctacgttgcaaccgggcacagctgctgggg 383 ||||| || |||||||||||||| || || ||||| || ||||||| ||| ||||| Sbjct: 16800 ggggagattcccggggtgaagggttgttatgttgccactgggcacaactgttgggg 16855
>emb|BX897741.9| Zebrafish DNA sequence from clone DKEY-273O13 in linkage group 5, complete sequence Length = 168673 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 atttctcaacaacaagaaga 499 |||||||||||||||||||| Sbjct: 22874 atttctcaacaacaagaaga 22893
>gb|AC104450.2| Homo sapiens chromosome 3 clone RP11-493K19, complete sequence Length = 217337 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gagggtgtccagccagctca 250 |||||||||||||||||||| Sbjct: 86915 gagggtgtccagccagctca 86896
>gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotease ANPC gene, complete cds Length = 4688 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cactcgccgagctcatcctc 432 |||||||||||||||||||| Sbjct: 3908 cactcgccgagctcatcctc 3889
>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence Length = 158692 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 agatttctcaacaacaagaa 497 |||||||||||||||||||| Sbjct: 68714 agatttctcaacaacaagaa 68733
>gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OABb-520P24, complete sequence Length = 142317 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 599 ggggacaccaaatcaaataatgta 622 |||||||| ||||||||||||||| Sbjct: 3496 ggggacacaaaatcaaataatgta 3519
>gb|AC004814.2|AC004814 Homo sapiens clone 3938P1, complete sequence Length = 83030 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gagggtgtccagccagctca 250 |||||||||||||||||||| Sbjct: 8156 gagggtgtccagccagctca 8137 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,590,508 Number of Sequences: 3902068 Number of extensions: 4590508 Number of successful extensions: 77407 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77306 Number of HSP's gapped (non-prelim): 96 length of query: 672 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 649 effective length of database: 17,143,297,704 effective search space: 11126000209896 effective search space used: 11126000209896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)