ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdn05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 35 0.047
2GLUQ_BORBR (Q7WDN0) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-)... 30 2.0
3ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effe... 29 3.4
4ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contain... 29 3.4
5GBPA_VIBVY (Q7MEW9) GlcNac-binding protein A precursor 28 5.8
6GBPA_VIBVU (Q8D7V4) GlcNac-binding protein A precursor 28 5.8
7MIAA_MYCPA (Q73W20) tRNA delta(2)-isopentenylpyrophosphate trans... 28 5.8
8ADA15_MOUSE (O88839) ADAM 15 precursor (EC 3.4.24.-) (A disinteg... 28 5.8
9SOX5_MOUSE (P35710) Transcription factor SOX-5 28 7.6
10LIPH_RAT (P07867) Hepatic triacylglycerol lipase precursor (EC 3... 27 9.9
11GLUQ_BORPA (Q7W2N4) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-)... 27 9.9
12SALL4_HUMAN (Q9UJQ4) Sal-like protein 4 (Zinc finger protein SALL4) 27 9.9

>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 35.0 bits (79), Expect = 0.047
 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 221 QVRITQGNH--GSTIITCVTTVKPGSSNVLY 307
           QV +TQGNH     II+ VT VKPGS  V Y
Sbjct: 62  QVHVTQGNHEGNGVIISWVTPVKPGSKTVQY 92



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>GLUQ_BORBR (Q7WDN0) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 319

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 60  PGRCGPPLLAGRAPRSWRGLSSPGIE 137
           PG C   L AGR  R+WR    PG+E
Sbjct: 140 PGTCREGLPAGRQARAWRVRVPPGVE 165



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>ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effect factor)|
          Length = 361

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +3

Query: 60  PGRCGP--PLLAGRAPRSWR 113
           PG C P  P  AGR PRSWR
Sbjct: 111 PGSCQPRSPARAGRPPRSWR 130



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>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 877

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 232 HTRQPWQYNNHMCD-NSQTWIK 294
           HT  PWQ+NN   D N+ TW++
Sbjct: 636 HTTVPWQWNNRTPDWNNMTWLE 657



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>GBPA_VIBVY (Q7MEW9) GlcNac-binding protein A precursor|
          Length = 485

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 110 PRPWSSPCEQWRPTST-WKXFTPPHW 36
           P P+S  C QW PT+T ++  T  HW
Sbjct: 453 PFPYSGYCVQWTPTATQYQPGTGSHW 478



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>GBPA_VIBVU (Q8D7V4) GlcNac-binding protein A precursor|
          Length = 485

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 110 PRPWSSPCEQWRPTST-WKXFTPPHW 36
           P P+S  C QW PT+T ++  T  HW
Sbjct: 453 PFPYSGYCVQWTPTATQYQPGTGSHW 478



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>MIAA_MYCPA (Q73W20) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 314

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 39  VRWCEXLPGRCGPPLLAGRAPRSWRGLS 122
           VRW +   G C PP LA  A  +WR +S
Sbjct: 289 VRWLDA--GACSPPRLADAALEAWRHVS 314



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>ADA15_MOUSE (O88839) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 15) (Metalloproteinase-like,
           disintegrin-like, and cysteine-rich protein 15) (MDC-15)
           (Metalloprotease RGD disintegrin protein) (Metargidin)
           (AD56)
          Length = 864

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = -3

Query: 127 GELKPRHDLGALPASNGGPHLPGRXSHHRTGSLHLVCPSAVA 2
           G  KP      LPA+  G H PG       GSL LV PS  A
Sbjct: 812 GPTKPPPPRKPLPANPQGQHPPGDLPGPGDGSLPLVVPSRPA 853



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>SOX5_MOUSE (P35710) Transcription factor SOX-5|
          Length = 763

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 118 KPRHDLGALPASNGGPHLPGRXSHHRTGSLHLVCPSAVA 2
           KP+   G  PAS   PH+P    +   G L    P+A+A
Sbjct: 400 KPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALA 438



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>LIPH_RAT (P07867) Hepatic triacylglycerol lipase precursor (EC 3.1.1.3)|
           (Hepatic lipase) (HL)
          Length = 494

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 7   QRTGTQDEGIQCGGVXSFQVDVGLHCSQGELQGRG 111
           Q +  Q+ G QC  + SF   + L+C +G     G
Sbjct: 292 QHSNLQNTGFQCSNMDSFSQGLCLNCKKGRCNSLG 326



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>GLUQ_BORPA (Q7W2N4) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 319

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 60  PGRCGPPLLAGRAPRSWRGLSSPGIE 137
           PG C   L A R  R+WR    PG+E
Sbjct: 140 PGTCREGLPASRQARAWRVRVPPGVE 165



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>SALL4_HUMAN (Q9UJQ4) Sal-like protein 4 (Zinc finger protein SALL4)|
          Length = 1053

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 130 PGELKPRHDLGALPASNGGPHLPG 59
           PG+L+P    G  P S GGP LPG
Sbjct: 504 PGDLQP----GPSPESEGGPTLPG 523


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,488,305
Number of Sequences: 219361
Number of extensions: 839506
Number of successful extensions: 2297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2297
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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