ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdn01 |
|---|---|
| Clone Library Name | barley_pub |
>PALI1_KLULA (Q6CXZ7) pH-response regulator palI/RIM9 homolog 1| Length = 220 Score = 36.6 bits (83), Expect = 0.015 Identities = 27/107 (25%), Positives = 51/107 (47%) Frame = +3 Query: 57 VYAPRKAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLS 236 ++ P AK +K+ LL+++ F + V LFA ++ + W+ SV +F S Sbjct: 76 LHLPNHAKYALSKL-LLVHVLSFVCVLVFWLFAI-----LICIKWLNTSKSVLLFAVGWS 129 Query: 237 IIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNIL 377 ++ T V + F + + + S + W + +L+ +VAL IL Sbjct: 130 MV-----TFMVSLLGFLIDVLMFASHVTWSSWLMLVSAFFVALSGIL 171
>GP158_HUMAN (Q5T848) Probable G-protein coupled receptor 158 precursor| Length = 1215 Score = 33.9 bits (76), Expect = 0.098 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Frame = +3 Query: 39 YIIMYLVYAPRKAKIFTAKIVLLLNIAGFG---LIFVLTLFAFHGET-RVVSLGWI-CVG 203 ++ M +VY RKAK A ++LL FG L F + + F T R + L W +G Sbjct: 432 FVSMLVVYHFRKAKSIRASGLILLETILFGSLLLYFPVVILYFEPSTFRCILLRWARLLG 491 Query: 204 FSVCVFVAPLSI--IGRVIKTKSVEYMPFSLS------LTLTLSAIVWFLYG 335 F+ L + + +V +++ + +P+ L + L + WFL G Sbjct: 492 FATVYGTVTLKLHRVLKVFLSRTAQRIPYMTGGRVMRMLAVILLVVFWFLIG 543
>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor| Length = 1200 Score = 32.7 bits (73), Expect = 0.22 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Frame = +3 Query: 39 YIIMYLVYAPRKAKIFTAKIVLLLNIAGFG---LIFVLTLFAFHGET-RVVSLGWI-CVG 203 ++ M +VY RKAK A ++LL FG L F + + F T R + L W +G Sbjct: 432 FVSMLVVYHFRKAKSIRASGLILLETILFGSLLLYFPVVILYFEPSTFRCILLRWARLLG 491 Query: 204 FSVCVFVAPLSI--IGRVIKTKSVEYMPFSLS------LTLTLSAIVWFLYG 335 F+ L + + +V +++ + +P+ L + + + WFL G Sbjct: 492 FATVYGTVTLKLHRVLKVFLSRTAQRIPYMTGGRVMRMLAVIVLVVFWFLVG 543
>O2T27_HUMAN (Q8NH04) Olfactory receptor 2T27 (Olfactory receptor OR1-67)| Length = 317 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Frame = +3 Query: 222 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNIL 377 + P ++ +V+ +++ + + L LTL+ +FL GL+ D+YVA+ N L Sbjct: 77 IVPKMLVDQVMSQRAISFAGCTAQHFLYLTLAGAEFFLLGLMSYDRYVAICNPL 130
>Y048_UREPA (Q9PR97) Hypothetical protein UU048| Length = 496 Score = 30.0 bits (66), Expect = 1.4 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Frame = +3 Query: 36 VYIIMYLVYAPRKAKIFTAKIVLLLNIAGFGLIFVLTLF--AFHGETRVVSLGWICVGFS 209 + +I+Y+V+ +K + + LLN+ I L+LF VVSL + + + Sbjct: 332 IILILYMVFTLKKRLSVKSSLNTLLNLVVTQTILSLSLFLVTLFNSKSVVSLINVFITIT 391 Query: 210 VCVFVAPLSII-GRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKY 356 V + V + I + I TK + + + L + +AIV F Y LL D + Sbjct: 392 VQMSVFGIYIFQNKNISTKLLVLLKVIMILIILTAAIVGFDY-LLTSDHH 440
>Y112B_HAEIN (O86233) Hypothetical protein HI1126.1| Length = 371 Score = 29.6 bits (65), Expect = 1.9 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 13/81 (16%) Frame = +3 Query: 18 GCVIETVYII-------MYLV-----YAPR-KAKIFTAKIVLLLNIAGFGLIFVLTLFAF 158 G +IE +++I Y V Y P K KI+ ++ LLNIAG G IF L A Sbjct: 24 GKIIEKIFVINPKRQTPAYQVNDGVDYMPMSKTKIW---LIQLLNIAGTGPIFGPILGAL 80 Query: 159 HGETRVVSLGWICVGFSVCVF 221 +G V++ WI +G C+F Sbjct: 81 YGP---VAMLWIVIG---CIF 95
>NU2M_ASTPE (Q33819) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 354 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 13/91 (14%) Frame = +3 Query: 63 APRKAKIFTAKIVLLLNIAGFGLIFVLT-------------LFAFHGETRVVSLGWICVG 203 AP ++ + + + +A G++ VL +FAF + + +GWIC Sbjct: 137 APFAVLVYVVESLNISLLASLGVLSVLVGGWGGLNQTQMRKIFAF---SSIAHIGWICST 193 Query: 204 FSVCVFVAPLSIIGRVIKTKSVEYMPFSLSL 296 V VA + ++ +I SV +M S L Sbjct: 194 VGYSVSVACVMLVAYIIINSSVFFMANSFDL 224
>DSBD_PASMU (Q9CP40) Thiol:disulfide interchange protein dsbD precursor (EC| 1.8.1.8) (Protein-disulfide reductase) (Disulfide reductase) Length = 576 Score = 29.3 bits (64), Expect = 2.4 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Frame = +3 Query: 54 LVYAPRKAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICV---GFSVCVFV 224 L+Y + +FT I L L G GL + + F S W+ F + Sbjct: 324 LLYVAQSGDLFTGAITLYLLALGMGLPLIF-ITVFGNNILPKSGNWMIQVKNAFGFVLLA 382 Query: 225 APLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLY 332 P+ +I RV +E MP SL S +W LY Sbjct: 383 LPIFLISRVF--PEIE-MPLWFSLAFAFS--LWLLY 413
>PUS3_YEAST (P31115) tRNA pseudouridine synthase 3 (EC 5.4.99.-) (tRNA-uridine| isomerase 3) (tRNA pseudouridylate synthase 3) (Depressed growth-rate protein DEG1) Length = 442 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -2 Query: 256 LITRPMMLRGATKTHTEKPTQIQPSETTRVSPWKAKRVRTKMSPK 122 LI R L A K H+EK I+ ++ ++S + R + K +PK Sbjct: 38 LIRRITELENANKPHSEKFQHIEDNKKRKISQEEVTRSKAKKAPK 82
>Y3374_BACAN (Q81N43) UPF0078 membrane protein BA3374/GBAA3374/BAS3128| Length = 190 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = +3 Query: 192 ICVGFSVCVFVAPLSI-IGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALP 368 + V +F++PL + +G V+ ++ + + +SL+ L+ I F+Y L+ +DK + Sbjct: 104 VATATGVFLFLSPLGVLVGFVVFVLTLLFTKY-VSLSSMLAGIALFIYSLIFEDKVIIAL 162 Query: 369 NIL 377 ++L Sbjct: 163 SLL 165
>CYB_TRYBB (P00164) Cytochrome b| Length = 363 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Frame = +3 Query: 84 FTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTK 263 FT+ + LLL I F I ++ LF H L W +GF + VF+ ++ IG V+ Sbjct: 77 FTSLLYLLLYIHIFKSITLIILFDTH------ILVWF-IGFILFVFIIIIAFIGYVLPCT 129 Query: 264 SVEYMPFSL--SLTLTLSAI-VWFLY 332 + Y ++ ++ T+ + +W Y Sbjct: 130 MMSYWGLTVFSNIIATVPILGIWLCY 155
>Y110_METJA (Q57574) Hypothetical protein MJ0110| Length = 93 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +3 Query: 225 APLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNIL 377 A L + + +K K + + + +T T +W +YG+L D + + NIL Sbjct: 23 ASLPQLIKSLKEKDMSNISLAFVITFTTGLTLWLIYGILRNDYPIIVFNIL 73
>CYB_LEITA (P14548) Cytochrome b| Length = 371 Score = 28.9 bits (63), Expect = 3.2 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Frame = +3 Query: 84 FTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTK 263 FT+ + LL + F I ++ LF H L W VGF + +F+ + IG V+ Sbjct: 85 FTSLLFFLLYVHIFKCIVLIILFDTH------ILVW-AVGFIIYIFIVVIGFIGYVLPCT 137 Query: 264 SVEYMPFSL--SLTLTLSAI-VWFLY 332 + Y ++ ++ T+ I W Y Sbjct: 138 MMSYWGLTVFSNILATVPVIGTWLCY 163
>ALLC_MACFA (Q4R964) Probable allantoicase (EC 3.5.3.4) (Allantoate| amidinohydrolase) Length = 410 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 159 HGETRVVSLGWICVGFSVCVFVAPLSIIG 245 H + ++ G +CVGFS F P +IIG Sbjct: 214 HADLVAIAFGGVCVGFSSAKFGHPNNIIG 242
>OR2T2_HUMAN (Q6IF00) Olfactory receptor 2T2 (Olfactory receptor OR1-43)| Length = 324 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Frame = +3 Query: 210 VCVFVAPLSIIGRVIKTKSVEYMPFSLSLTLTLSAI--VWFLYGLLIKDKYVALPNIL 377 +C+ V P + + K K++ ++ ++ + L L+ I +FL GL+ D+YVA+ N L Sbjct: 75 ICITV-PKMLQDLLSKDKTISFLGCAVQIFLYLTLIGGEFFLLGLMAYDRYVAVCNPL 131
>MNHA_STAAU (Q9ZNG6) Na(+)/H(+) antiporter subunit A (Mnh complex subunit A)| Length = 801 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 129 LIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIK----TKSVEYMP-FSLS 293 LIF L + + + + LGW + + +F+ L++I + K++ +MP F ++ Sbjct: 12 LIFALIIPILYRFFKRIHLGWFVLSVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMN 71 Query: 294 LTLTLSAIVWFLYGLLI 344 L L + L+ LLI Sbjct: 72 FDLYLDGL-GLLFSLLI 87
>OR2T1_HUMAN (O43869) Olfactory receptor 2T1 (Olfactory receptor 1-25) (OR1-25)| (Olfactory receptor OR1-61) Length = 311 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +3 Query: 222 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNIL 377 + P ++ ++ +++ ++ + L LTL +FL GL+ D+YVA+ N L Sbjct: 76 IVPKMLVNYLLDQRTISFVGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICNPL 129
>YFRD_SCHPO (Q9UT43) Putative phospholipid-transporting ATPase C821.13c (EC| 3.6.3.1) Length = 1562 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/47 (23%), Positives = 25/47 (53%) Frame = +3 Query: 216 VFVAPLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKY 356 +F A + I+ + ++Y+ + L L+++ WFL+ + I + Y Sbjct: 1422 IFTAAIFIMNFKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHY 1468
>Y129_CHLPN (Q9JRX2) Hypothetical protein| CPn_0129/CPn_0130/CP0642/CPj0130/CpB0131 Length = 394 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Frame = -2 Query: 268 TLLVLITRPMMLRG-----ATKTHTEKPTQIQPSETTRVSPWKAKRVRTKMSPKPAMLRR 104 +++VL T +L G + + +KP I P ET + PW ++ K+ +L Sbjct: 65 SIIVLSTGISLLIGTQCSKSVQKDEQKPKSIFPKETPSLDPWLLNPLKNKIQSSETLLLD 124 Query: 103 RTILAVK 83 T + +K Sbjct: 125 PTSINLK 131
>GRID1_RAT (Q62640) Glutamate receptor delta-1 subunit precursor (GluR| delta-1) Length = 1009 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/53 (20%), Positives = 25/53 (47%) Frame = +3 Query: 189 WICVGFSVCVFVAPLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIK 347 W C+ ++ V + ++ R+ +S S + TL + +W +YG ++ Sbjct: 566 WACIAAAIPVVGVLIFVLNRIQAVRSQSATQPRPSASATLHSAIWIVYGAFVQ 618
>GRID1_MOUSE (Q61627) Glutamate receptor delta-1 subunit precursor (GluR| delta-1) Length = 1009 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/53 (20%), Positives = 25/53 (47%) Frame = +3 Query: 189 WICVGFSVCVFVAPLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIK 347 W C+ ++ V + ++ R+ +S S + TL + +W +YG ++ Sbjct: 566 WACIAAAIPVVGVLIFVLNRIQAVRSQSATQPRPSASATLHSAIWIVYGAFVQ 618
>BOX5_NOTVI (P53771) Homeobox protein box-5 (NVHBOX-5) (Fragment)| Length = 258 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +2 Query: 293 PHAHPQRHRLVPLRPAHQGQ 352 PH HPQ H P P HQGQ Sbjct: 76 PHGHPQ-HHASPYLPYHQGQ 94
>NU2M_SYLME (Q2TQ18) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 347 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Frame = +3 Query: 45 IMYLVYAPRKAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFV 224 ++Y +YA + +L + I G+G + L + + +GW+ + + Sbjct: 141 LLYQIYASLNTNLLMLMSLLSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMIAIMTYNPNL 200 Query: 225 APLSIIGRVIKTKSVEYMPFSLSLTLTLS-AIVW 323 + L++I ++ T S+ + S T TLS ++ W Sbjct: 201 SLLNLIIYILMTTSMFLLLLFNSTTSTLSLSLTW 234
>VK02_SWPVK (Q08520) G-protein coupled receptor homolog K2| Length = 370 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = +3 Query: 72 KAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSII 242 K I I+L L + G IFV++L AF + + + + S C+FV + I Sbjct: 59 KYHIIVIHIILFL-LGSIGNIFVVSLIAFKRNKSITDIYILNLSMSDCIFVFQIPFI 114
>SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7)| Length = 380 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +2 Query: 287 PLPHAHPQRHRLVPLRPAHQGQIRXAPKHP 376 P ++H H L P AH GQ+ P+HP Sbjct: 273 PAYYSHATYHPLHPNLQAHLGQLSPPPEHP 302
>LCR40_ARATH (P82755) Putative low-molecular-weight cysteine-rich protein LCR40| precursor Length = 74 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Frame = +3 Query: 129 LIFVLTLFAF---HGETRVVSLGWICVGFSVC 215 +I VL F F GE + S GW CVG C Sbjct: 6 IILVLVFFFFISSSGEAKTCSDGWTCVGEDKC 37
>OTC_ARCFU (O29013) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 307 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = +3 Query: 138 VLTLFAFHGETRVVSLGWICVGFSVC---VFVAPLSIIGRVIKT 260 +LT++ + G+ + V+L W+ G +VC + A L+ + VI T Sbjct: 137 LLTIYEYRGDFKDVTLAWVGDGNNVCNSMILAAALTGMKMVIST 180
>OR59B_DROME (Q9W1P8) Putative odorant receptor 59b| Length = 398 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = +3 Query: 162 GETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLL 341 G R V L W CV F+ VF P+ I ++ E+ F+ LT + +YG Sbjct: 40 GVLRYVYLFWTCVPFAFGVFYLPVGFIISYVQ----EFKNFTPGEFLTSLQVCINVYGAS 95 Query: 342 IK 347 +K Sbjct: 96 VK 97
>MNHA_STAAW (Q8NXF6) Na(+)/H(+) antiporter subunit A (Mnh complex subunit A)| Length = 801 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 129 LIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIK----TKSVEYMP-FSLS 293 LIF L + + + + LGW + + +F+ L++I + K++ +MP F ++ Sbjct: 12 LIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMN 71 Query: 294 LTLTLSAIVWFLYGLLI 344 L L + L+ LLI Sbjct: 72 FDLYLDGL-GLLFSLLI 87
>MNHA_STAAS (Q6GAX4) Na(+)/H(+) antiporter subunit A (Mnh complex subunit A)| Length = 801 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 129 LIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIK----TKSVEYMP-FSLS 293 LIF L + + + + LGW + + +F+ L++I + K++ +MP F ++ Sbjct: 12 LIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMN 71 Query: 294 LTLTLSAIVWFLYGLLI 344 L L + L+ LLI Sbjct: 72 FDLYLDGL-GLLFSLLI 87
>MNHA_STAAR (Q6GID6) Na(+)/H(+) antiporter subunit A (Mnh complex subunit A)| Length = 801 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 129 LIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIK----TKSVEYMP-FSLS 293 LIF L + + + + LGW + + +F+ L++I + K++ +MP F ++ Sbjct: 12 LIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMN 71 Query: 294 LTLTLSAIVWFLYGLLI 344 L L + L+ LLI Sbjct: 72 FDLYLDGL-GLLFSLLI 87
>MNHA_STAAN (P60675) Na(+)/H(+) antiporter subunit A (Mnh complex subunit A)| Length = 801 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 129 LIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIK----TKSVEYMP-FSLS 293 LIF L + + + + LGW + + +F+ L++I + K++ +MP F ++ Sbjct: 12 LIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMN 71 Query: 294 LTLTLSAIVWFLYGLLI 344 L L + L+ LLI Sbjct: 72 FDLYLDGL-GLLFSLLI 87
>MNHA_STAAM (P60674) Na(+)/H(+) antiporter subunit A (Mnh complex subunit A)| Length = 801 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 129 LIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIK----TKSVEYMP-FSLS 293 LIF L + + + + LGW + + +F+ L++I + K++ +MP F ++ Sbjct: 12 LIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMN 71 Query: 294 LTLTLSAIVWFLYGLLI 344 L L + L+ LLI Sbjct: 72 FDLYLDGL-GLLFSLLI 87
>MNHA_STAAC (Q5HHD3) Na(+)/H(+) antiporter subunit A (Mnh complex subunit A)| Length = 801 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 129 LIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIK----TKSVEYMP-FSLS 293 LIF L + + + + LGW + + +F+ L++I + K++ +MP F ++ Sbjct: 12 LIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMN 71 Query: 294 LTLTLSAIVWFLYGLLI 344 L L + L+ LLI Sbjct: 72 FDLYLDGL-GLLFSLLI 87
>POL2_TORVR (P25247) RNA2 polyprotein (P2) [Contains: X3 protein; X4 protein;| Movement protein (MP); Coat protein (CP)] Length = 1882 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/54 (22%), Positives = 24/54 (44%) Frame = -2 Query: 244 PMMLRGATKTHTEKPTQIQPSETTRVSPWKAKRVRTKMSPKPAMLRRRTILAVK 83 P+ + A +T T + E +PW + + + P P + +R+ A+K Sbjct: 109 PLAVPSAKQTSTAMEVVLSAEEAAITAPWLLRPCKGEAPPPPPLTQRQQFAALK 162
>O2T35_HUMAN (Q8NGX2) Olfactory receptor 2T35 (Olfactory receptor OR1-66)| Length = 323 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = +3 Query: 210 VCVFVAPLSIIGRVIKTKSVEYMPFSLSLT-LTLSAIVWFLYGLLIKDKYVALPNIL 377 +C+ V P + + K K++ ++ ++ + LTL +FL GL+ D+YVA+ N L Sbjct: 75 ICITV-PKMLQDLLSKDKTISFLGCAVQIFYLTLIGGEFFLLGLMAYDRYVAVCNPL 130
>NMDZ1_CANFA (Q5R1P0) Glutamate [NMDA] receptor subunit zeta 1 precursor| (N-methyl-D-aspartate receptor subunit NR1) (NMD-R1) (N-methyl-D-aspartate receptor 1) Length = 943 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 189 WICVGFSVCVFVAPLSIIGRV-----IKTKSVEYMPFSLSLTLTLSAIVWFLYGLLI 344 W+ VG SV V L ++ R K S E +L TLS+ +WF +G+L+ Sbjct: 584 WLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDAL----TLSSAMWFSWGVLL 636
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 187 PSETTRVSPWKAKRVRTKMSPKPAMLRRRTILAVKILAFLGA 62 P ++ RVSP+ AKR R + KP +L+ ++ FLG+ Sbjct: 1550 PRDSARVSPFPAKR-RERPPRKPELLQEESLPPPHSSGFLGS 1590
>NMDZ1_RAT (P35439) Glutamate [NMDA] receptor subunit zeta 1 precursor| (N-methyl-D-aspartate receptor subunit NR1) (NMD-R1) (N-methyl-D-aspartate receptor) Length = 938 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 189 WICVGFSVCVFVAPLSIIGRV-----IKTKSVEYMPFSLSLTLTLSAIVWFLYGLLI 344 W+ VG SV V L ++ R K S E +L TLS+ +WF +G+L+ Sbjct: 563 WLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDAL----TLSSAMWFSWGVLL 615
>NMDZ1_MOUSE (P35438) Glutamate [NMDA] receptor subunit zeta 1 precursor| (N-methyl-D-aspartate receptor subunit NR1) Length = 938 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 189 WICVGFSVCVFVAPLSIIGRV-----IKTKSVEYMPFSLSLTLTLSAIVWFLYGLLI 344 W+ VG SV V L ++ R K S E +L TLS+ +WF +G+L+ Sbjct: 563 WLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDAL----TLSSAMWFSWGVLL 615
>NMDZ1_HUMAN (Q05586) Glutamate [NMDA] receptor subunit zeta 1 precursor| (N-methyl-D-aspartate receptor subunit NR1) Length = 938 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 189 WICVGFSVCVFVAPLSIIGRV-----IKTKSVEYMPFSLSLTLTLSAIVWFLYGLLI 344 W+ VG SV V L ++ R K S E +L TLS+ +WF +G+L+ Sbjct: 563 WLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDAL----TLSSAMWFSWGVLL 615
>CYK2_YEAST (Q05080) Cytokinesis 2 protein| Length = 669 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = -2 Query: 271 STLLVLITRPMMLRGATKTHTEKPTQIQPSETTRVSPWKAKRVRTKMSPKP 119 ST +L P+ +RG ++ HT + + I + + + R + S KP Sbjct: 517 STSTILFKPPVAVRGTSRGHTHRQSMIMQDSSNPIEDALYEMERIQSSSKP 567 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,247,900 Number of Sequences: 219361 Number of extensions: 481462 Number of successful extensions: 2042 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 1996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2040 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
