ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdl06 |
|---|---|
| Clone Library Name | barley_pub |
>SMT2_ARATH (Q39227) 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143)| (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) Length = 361 Score = 34.7 bits (78), Expect = 0.15 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Frame = +3 Query: 300 HMKPSLQIAQYK--SNLFSQLSVE------GKNILELGVGTGPNLKYYASADGVNVIGVD 455 H PS+ +K + L +++V+ G+ IL++G G G ++ AS NV+G+ Sbjct: 94 HFSPSIPGKSHKDATRLHEEMAVDLIQVKPGQKILDVGCGVGGPMRAIASHSRANVVGIT 153 Query: 456 PNMYMEEYSRAAATSAG 506 N Y +R AG Sbjct: 154 INEYQVNRARLHNKKAG 170
>ERG6_MAGGR (Q5EN22) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 390 Score = 34.7 bits (78), Expect = 0.15 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 321 IAQYKSNLFSQLSVE-GKNILELGVGTGPNLKYYASADGVNVIGVDPNMYMEEYSRAAAT 497 I +Y+ L ++ ++ G +L++G G G + A G N+ G+ N Y E +R A Sbjct: 119 ITRYEHTLAHRIGIKKGMKVLDIGCGVGGPARQIAKFTGANITGITINEYQVERARRYAE 178 Query: 498 SAG 506 G Sbjct: 179 MEG 181
>Y912_HAEIN (P44074) Hypothetical protein HI0912| Length = 254 Score = 34.3 bits (77), Expect = 0.20 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +3 Query: 357 SVEGKNILELGVGTGPNLKYYASADGVNVIGVDPNMYMEEYSRAAATSAG 506 +++GK +L+LG GTG +L+ Y VIG D + M E + G Sbjct: 42 NLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQAEKDLQKCG 91
>SMT2_ORYSA (O82427) 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143)| (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) Length = 363 Score = 33.5 bits (75), Expect = 0.34 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 366 GKNILELGVGTGPNLKYYASADGVNVIGVDPNMYMEEYSRAAATSAG 506 G +L++G G G ++ A+ G NV+G+ N Y +RA AG Sbjct: 129 GHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAG 175
>Y928_METJA (Q58338) Hypothetical protein MJ0928 (M.MjaHemkP)| Length = 197 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 354 LSVEGKNILELGVGTGPNLKYYASADGVNVIGVDPNMYMEEYSRAAA 494 + V+ K++LE+GVGTG A ++GVD N Y + ++ A Sbjct: 31 VDVKNKDVLEIGVGTGLISIACAKKGAKKIVGVDINPYAVKLAKENA 77
>ABD1_YEAST (P32783) mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56)| Length = 436 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Frame = +3 Query: 288 RAWCHMKPSLQIAQY----KSNLFSQLSVEGKNILELGVGTGPNLKYYASADGVNVIGVD 455 RA ++ P +++ + K L + + G +LELG G G +L+ Y +A IG+D Sbjct: 135 RAKRNLSPIIKLRNFNNAIKYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGID 194
>UVH3_ARATH (Q9ATY5) DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive| protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog) (AtUVH3) (AtXPG) (AtRAD2) Length = 1479 Score = 30.0 bits (66), Expect = 3.7 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +2 Query: 392 WNRPQLKVLRKC*WGKCNW 448 W +P L VLRK W K NW Sbjct: 1139 WGKPDLSVLRKLCWEKFNW 1157
>ERG6_YARLI (Q6C2D9) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 381 Score = 29.3 bits (64), Expect = 6.4 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 324 AQYKSNLFSQLSVE-GKNILELGVGTGPNLKYYASADGVNVIGVDPNMYMEE 476 A+++ L ++ ++ G +L++G G G + A G N++G++ N Y E Sbjct: 114 ARHEHYLAYKMGIQPGMKVLDVGCGVGGPAREIARFTGANIVGLNNNDYQVE 165
>SERA_METJA (Q58424) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 524 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 312 SLQIAQYKSNLFSQLSVEGKNILELGVGT-GPNLKYYASADGVNVIGVDP 458 SL+ ++ F + + GK + +G+G G + A A G+N+IG DP Sbjct: 121 SLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDP 170
>LEU1_COREF (Q8FU05) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 581 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/55 (29%), Positives = 31/55 (56%) Frame = +3 Query: 336 SNLFSQLSVEGKNILELGVGTGPNLKYYASADGVNVIGVDPNMYMEEYSRAAATS 500 + + ++L V+G+N G G GP Y + + +N+ ++ ++EYS+ A TS Sbjct: 476 ATITAELVVDGENQTVSGRGNGPLAAYANALESLNI-----DVEIQEYSQHARTS 525
>ASA1_ENTFA (P17953) Aggregation substance precursor| Length = 1296 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = +3 Query: 306 KPSLQIAQYKSNLF------SQLSVEGKNILELGVGTGPNLKYYASADGVNVIGVDP 458 K +++ +YK+N+ +++ KNI +L V G +L+Y + D + VDP Sbjct: 561 KATIEFNRYKANVVPVLVPNKEVTDGQKNINDLNVKRGDSLQYIVTGDTTELAKVDP 617
>HEMH_MYCAV (O07401) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 335 Score = 28.9 bits (63), Expect = 8.3 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Frame = +1 Query: 223 ASAGAPSEAGLVRE----ALRDGHGQGHGVI*SRACR 321 A+AG P A L+R+ ALR HG+GH ACR Sbjct: 63 AAAGRPEPARLLRQPQLGALRRRHGEGHTRQRDSACR 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,533,930 Number of Sequences: 219361 Number of extensions: 1299756 Number of successful extensions: 4115 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4115 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
