ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basdj09 |
|---|---|
| Clone Library Name | barley_pub |
>F10A4_HUMAN (Q8IZP2) Protein FAM10A4| Length = 240 Score = 68.2 bits (165), Expect(2) = 2e-17 Identities = 31/55 (56%), Positives = 40/55 (72%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKIVEH 259 DSA+ YK RG A+ +LG WEEAA DL A DYD++ +A+LK+V+P A KI EH Sbjct: 176 DSAQPYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEVQPRAQKIAEH 230 Score = 38.1 bits (87), Expect(2) = 2e-17 Identities = 16/25 (64%), Positives = 22/25 (88%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEINP 93 +SVF+K++KP AAIRD + A+EINP Sbjct: 151 ASVFVKLQKPNAAIRDCDRAIEINP 175
>F10A1_RAT (P50503) Hsc70-interacting protein (Hip) (Protein ST13 homolog)| (Protein FAM10A1) Length = 368 Score = 69.3 bits (168), Expect = 2e-12 Identities = 31/55 (56%), Positives = 42/55 (76%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKIVEH 259 DSA+ YK RG A+ +LG WEEAARDL A +DYD++ +A+L++V+P A KI EH Sbjct: 179 DSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQPRAQKIAEH 233 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEINPGLCKGLQDPWNG*CH 138 +SVF+K++KP AAIRD + A+EINP + + W G H Sbjct: 154 ASVFVKLQKPNAAIRDCDRAIEINPDSAQPYK--WRGKAH 191
>F10A1_CHICK (Q5ZLF0) Hsc70-interacting protein (Hip) (Protein ST13 homolog)| (Protein FAM10A1) Length = 361 Score = 68.6 bits (166), Expect = 4e-12 Identities = 31/55 (56%), Positives = 41/55 (74%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKIVEH 259 DSA+ YK RG A+ +LG WEEAA DL A +DYD++ +A+LK+V+P A KI EH Sbjct: 178 DSAQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEH 232 Score = 38.1 bits (87), Expect = 0.006 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEINPGLCKGLQDPWNG*CH 138 +SVF+K++KP AAIRD + A++INP + + W G H Sbjct: 153 ASVFVKLQKPNAAIRDCDRAIKINPDSAQTYK--WRGKAH 190
>F10A1_PONPY (Q5RF31) Hsc70-interacting protein (Hip) (Protein ST13 homolog)| (Protein FAM10A1) Length = 369 Score = 68.6 bits (166), Expect = 4e-12 Identities = 31/55 (56%), Positives = 41/55 (74%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKIVEH 259 DSA+ YK RG A+ +LG WEEAA DL A +DYD++ +A+LK+V+P A KI EH Sbjct: 180 DSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPKAQKIAEH 234 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEINPGLCKGLQDPWNG*CH 138 +SVF+K++KP AAIRD + A+EINP + + W G H Sbjct: 155 ASVFVKLQKPNAAIRDCDRAIEINPDSAQPYK--WRGKAH 192
>F10A1_HUMAN (P50502) Hsc70-interacting protein (Hip) (Suppression of| tumorigenicity protein 13) (Putative tumor suppressor ST13) (Protein FAM10A1) (Progesterone receptor-associated p48 protein) (NY-REN-33 antigen) Length = 369 Score = 68.6 bits (166), Expect = 4e-12 Identities = 31/55 (56%), Positives = 41/55 (74%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKIVEH 259 DSA+ YK RG A+ +LG WEEAA DL A +DYD++ +A+LK+V+P A KI EH Sbjct: 180 DSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEH 234 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEINPGLCKGLQDPWNG*CH 138 +SVF+K++KP AAIRD + A+EINP + + W G H Sbjct: 155 ASVFVKLQKPNAAIRDCDRAIEINPDSAQPYK--WRGKAH 192
>F10A5_HUMAN (Q8NFI4) Protein FAM10A5| Length = 369 Score = 68.2 bits (165), Expect = 5e-12 Identities = 31/55 (56%), Positives = 41/55 (74%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKIVEH 259 DSA+ YK RG A+ +LG WEEAA DL A +DYD++ +A+LK+V+P A KI EH Sbjct: 180 DSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQPRAQKIAEH 234 Score = 38.1 bits (87), Expect = 0.006 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEINPGLCKGLQDPWNG*CH 138 +SVF+K++KP AAI+D + A+EINP + + W G H Sbjct: 155 ASVFVKLQKPNAAIQDCDRAIEINPDSAQPYK--WRGKAH 192
>F10A1_MOUSE (Q99L47) Hsc70-interacting protein (Hip) (Protein ST13 homolog)| (Protein FAM10A1) Length = 371 Score = 67.4 bits (163), Expect = 9e-12 Identities = 30/55 (54%), Positives = 41/55 (74%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKIVEH 259 DSA+ YK RG A+ +LG WEEAA DL A +DYD++ +A+L++V+P A KI EH Sbjct: 179 DSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQPRAQKIAEH 233 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEINPGLCKGLQDPWNG*CH 138 +SVF+K++KP AAIRD + A+EINP + + W G H Sbjct: 154 ASVFVKLQKPNAAIRDCDRAIEINPDSAQPYK--WRGKAH 191
>HRP_PLABE (Q08168) 58 kDa phosphoprotein (Heat shock-related protein) (HRP)| Length = 423 Score = 43.9 bits (102), Expect(2) = 5e-07 Identities = 22/54 (40%), Positives = 28/54 (51%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKIVE 256 DSA YK R A LGKWE A D+ IDYD+ + + K ++ KI E Sbjct: 179 DSANAYKIRAKAYRYLGKWEFAHADMEQGQKIDYDENLWDMQKLIQEKYKKIYE 232 Score = 27.3 bits (59), Expect(2) = 5e-07 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEIN 90 +S+ + +K+P A IRD AL +N Sbjct: 154 ASILLNLKRPKACIRDCTEALNLN 177
>PPID_GIBZE (Q4HXF6) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase| D) (Rotamase D) Length = 372 Score = 31.2 bits (69), Expect = 0.68 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDD-----EINAVLKKVEPNAHK 247 D AK + RG+AN L E A RDL A+ + +D E+N V K A K Sbjct: 307 DRAKAFYRRGLANIHLKDEEAAVRDLTEANKLAPNDSAITRELNGVKTKAAARAAK 362
>GLYA1_RALSO (Q8Y1G1) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 415 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +2 Query: 107 GYKTRGMANAMLGKW-EEAARDLHAASNIDYDDEINAVLKKVEP 235 G+ T GMA M GKW + L+A +IDY D + A+ ++ +P Sbjct: 126 GHLTHGMALNMSGKWFNVVSYGLNAQEDIDY-DALEALAQEKKP 168
>GLYA1_RALEJ (Q474L3) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 415 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 107 GYKTRGMANAMLGKW-EEAARDLHAASNIDYD 199 G+ T GMA M GKW + L+A +IDYD Sbjct: 126 GHLTHGMALNMSGKWFNVVSYGLNAQEDIDYD 157
>SYV_HELPJ (Q9ZK61) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 872 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/52 (28%), Positives = 30/52 (57%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKI 250 ++ K + +G+ NA G++E R L A + + NA+L+K+E + H++ Sbjct: 295 ETIKIFDEKGILNAHCGEFENLER-LEARDKVVAALKENALLEKIEEHVHQV 345
>STI1_YEAST (P15705) Heat shock protein STI1| Length = 589 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 19 SSVFIKMKKPAAAIRDANAALEINPGLCKG 108 S+ + +KK + A+ DAN ++INP KG Sbjct: 47 SACYTSLKKFSDALNDANECVKINPSWSKG 76
>SYV_HELPY (P56000) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 874 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/52 (28%), Positives = 30/52 (57%) Frame = +2 Query: 95 DSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKI 250 ++ K + +G+ NA G++E R L A + + NA+L+K+E + H++ Sbjct: 297 ETIKIFDEKGILNAHCGEFENLER-LEARDKVVERLKENALLEKIEEHTHQV 347
>SGT2_YEAST (Q12118) Small glutamine-rich tetratricopeptide repeat-containing| protein 2 (Viral protein U-binding protein) (SGT/UBP) Length = 346 Score = 23.9 bits (50), Expect(2) = 9.8 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +2 Query: 104 KGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKVEPNAHKI 250 +GY G A GK EEA +I+ D+ A+ + E K+ Sbjct: 171 RGYSRLGFAKYAQGKPEEALEAYKKVLDIEGDNATEAMKRDYESAKKKV 219 Score = 21.9 bits (45), Expect(2) = 9.8 Identities = 8/24 (33%), Positives = 16/24 (66%) Frame = +1 Query: 37 MKKPAAAIRDANAALEINPGLCKG 108 +K+ A++DA +A+ I+P +G Sbjct: 149 LKEYDQAVKDAESAISIDPSYFRG 172
>VO01_VACCV (Q80HX1) Protein O1| Length = 666 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 83 RSTQDSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKV 229 R T S KT+ M ++ W+ A L A I D IN VL K+ Sbjct: 387 RRTMLSDIDIKTKIMVLKIVKDWKSCALTLSAIKGIMVTDTINTVLSKI 435
>VO01_VACCC (P21093) Protein O1| Length = 666 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 83 RSTQDSAKGYKTRGMANAMLGKWEEAARDLHAASNIDYDDEINAVLKKV 229 R T S KT+ M ++ W+ A L A I D IN VL K+ Sbjct: 387 RRTMLSDIDIKTKIMVLKIVKDWKSCALTLSAIKGIMVTDTINTVLSKI 435 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,400,211 Number of Sequences: 219361 Number of extensions: 644245 Number of successful extensions: 1543 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1517 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1543 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
