ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdj01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_470331.1| Oryza sativa (japonica cultivar-group), mRNA 240 3e-60
2ref|XM_470330.1| Oryza sativa (japonica cultivar-group), mRNA 240 3e-60
3dbj|AK105896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
4dbj|AK061773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
5dbj|AK098986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 8e-58
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 168 1e-38
7gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom... 168 1e-38
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
9dbj|AK064539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
10gb|BT018571.1| Zea mays clone EL01N0442H06.d mRNA sequence 167 4e-38
11gb|AY107426.1| Zea mays PCO089573 mRNA sequence 105 1e-19
12gb|AC139758.3| Mus musculus BAC clone RP23-367E7 from chromosome... 42 1.6
13gb|AC126243.3| Mus musculus BAC clone RP24-260I19 from chromosom... 42 1.6
14emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-1... 42 1.6
15emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chr... 40 6.2
16gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.2
17gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.2
18gb|AC117530.2| Homo sapiens chromosome 5 clone RP11-294P1, compl... 40 6.2
19dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 6.2
20gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Canc... 40 6.2
21gb|AC153905.5| Mus musculus 6 BAC RP23-215A7 (Roswell Park Cance... 40 6.2
22gb|AC153601.6| Mus musculus 6 BAC RP23-405O6 (Roswell Park Cance... 40 6.2
23gb|CP000231.1| Rhodospirillum rubrum ATCC 11170 plasmid, complet... 40 6.2
24emb|AL691453.7| Mouse DNA sequence from clone RP23-17K2 on chrom... 40 6.2

>ref|XM_470331.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1375

 Score =  240 bits (121), Expect = 3e-60
 Identities = 256/302 (84%)
 Strand = Plus / Plus

                                                                       
Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 405 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 464

                                                                       
Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220
           || || || |  || ||||| ||| |||||||||| ||||| ||||| || || || |||
Sbjct: 465 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 524

                                                                       
Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 525 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 584

                                                                       
Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 585 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 644

                                                                       
Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400
           || ||||| |||||||| || |||  ||| ||||||||||| ||||  ||||||||||||
Sbjct: 645 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 704

             
Query: 401 tc 402
           ||
Sbjct: 705 tc 706



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 17  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 222 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 268



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>ref|XM_470330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score =  240 bits (121), Expect = 3e-60
 Identities = 256/302 (84%)
 Strand = Plus / Plus

                                                                       
Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 420 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 479

                                                                       
Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220
           || || || |  || ||||| ||| |||||||||| ||||| ||||| || || || |||
Sbjct: 480 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 539

                                                                       
Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 540 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 599

                                                                       
Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 600 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 659

                                                                       
Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400
           || ||||| |||||||| || |||  ||| ||||||||||| ||||  ||||||||||||
Sbjct: 660 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 719

             
Query: 401 tc 402
           ||
Sbjct: 720 tc 721



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 17  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 237 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 283



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>dbj|AK105896.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F02, full
           insert sequence
          Length = 1368

 Score =  240 bits (121), Expect = 3e-60
 Identities = 256/302 (84%)
 Strand = Plus / Plus

                                                                       
Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 444 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 503

                                                                       
Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220
           || || || |  || ||||| ||| |||||||||| ||||| ||||| || || || |||
Sbjct: 504 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 563

                                                                       
Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 564 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 623

                                                                       
Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 624 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 683

                                                                       
Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400
           || ||||| |||||||| || |||  ||| ||||||||||| ||||  ||||||||||||
Sbjct: 684 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 743

             
Query: 401 tc 402
           ||
Sbjct: 744 tc 745



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 17  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 261 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 307



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>dbj|AK061773.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D01, full
           insert sequence
          Length = 1368

 Score =  240 bits (121), Expect = 3e-60
 Identities = 256/302 (84%)
 Strand = Plus / Plus

                                                                       
Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 444 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 503

                                                                       
Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220
           || || || |  || ||||| ||| |||||||||| ||||| ||||| || || || |||
Sbjct: 504 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 563

                                                                       
Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 564 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 623

                                                                       
Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 624 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 683

                                                                       
Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400
           || ||||| |||||||| || |||  ||| ||||||||||| ||||  ||||||||||||
Sbjct: 684 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 743

             
Query: 401 tc 402
           ||
Sbjct: 744 tc 745



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 17  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 261 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 307



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>dbj|AK098986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P06, full
           insert sequence
          Length = 1320

 Score =  232 bits (117), Expect = 8e-58
 Identities = 255/302 (84%)
 Strand = Plus / Plus

                                                                       
Query: 101 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 160
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 432 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 491

                                                                       
Query: 161 ctgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcg 220
           || || || |  || ||||| ||| |||||||||| ||||| ||||| || || || |||
Sbjct: 492 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 551

                                                                       
Query: 221 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 280
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 552 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 611

                                                                       
Query: 281 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 340
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 612 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 671

                                                                       
Query: 341 tgcactgtacgatataccggggagtctccttgtatgatgagtattanatcaacatcattt 400
           || ||||| |||||||| || |||  ||| ||||||||| | ||||  ||||||||||||
Sbjct: 672 tgtactgtgcgatatactggagaggatccatgtatgatgggcattaggtcaacatcattt 731

             
Query: 401 tc 402
           ||
Sbjct: 732 tc 733



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 17  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 249 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 295



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  168 bits (85), Expect = 1e-38
 Identities = 182/215 (84%)
 Strand = Plus / Plus

                                                                            
Query: 102      aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 161
                ||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 34797258 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 34797317

                                                                            
Query: 162      tgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcgt 221
                | || || |  || ||||| ||| |||||||||| ||||| ||||| || || || ||||
Sbjct: 34797318 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 34797377

                                                                            
Query: 222      tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 281
                |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct: 34797378 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 34797437

                                                   
Query: 282      tcactgccatatctgaaccatgggtctttgtgagg 316
                ||||| | |||||||| ||| | ||||||||||||
Sbjct: 34797438 tcacttcaatatctgagccacgagtctttgtgagg 34797472



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                            
Query: 314      aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 373
                ||||| ||||||||||||||||| || || ||||| |||||||| || |||  ||| |||
Sbjct: 34798087 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 34798146

                                             
Query: 374      atgatgagtattanatcaacatcattttc 402
                |||||||| ||||  ||||||||||||||
Sbjct: 34798147 atgatgagcattaggtcaacatcattttc 34798175



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 17       gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
                |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 34796918 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 34796964



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>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
             sequence
          Length = 164352

 Score =  168 bits (85), Expect = 1e-38
 Identities = 182/215 (84%)
 Strand = Plus / Minus

                                                                         
Query: 102   aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 161
             ||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 65392 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 65333

                                                                         
Query: 162   tgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcgt 221
             | || || |  || ||||| ||| |||||||||| ||||| ||||| || || || ||||
Sbjct: 65332 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 65273

                                                                         
Query: 222   tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 281
             |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct: 65272 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 65213

                                                
Query: 282   tcactgccatatctgaaccatgggtctttgtgagg 316
             ||||| | |||||||| ||| | ||||||||||||
Sbjct: 65212 tcacttcaatatctgagccacgagtctttgtgagg 65178



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                         
Query: 314   aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 373
             ||||| ||||||||||||||||| || || ||||| |||||||| || |||  ||| |||
Sbjct: 64563 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 64504

                                          
Query: 374   atgatgagtattanatcaacatcattttc 402
             |||||||| ||||  ||||||||||||||
Sbjct: 64503 atgatgagcattaggtcaacatcattttc 64475



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 17    gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
             |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 65732 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 65686



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  168 bits (85), Expect = 1e-38
 Identities = 182/215 (84%)
 Strand = Plus / Plus

                                                                            
Query: 102      aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 161
                ||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 34887330 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 34887389

                                                                            
Query: 162      tgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcgt 221
                | || || |  || ||||| ||| |||||||||| ||||| ||||| || || || ||||
Sbjct: 34887390 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 34887449

                                                                            
Query: 222      tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 281
                |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct: 34887450 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 34887509

                                                   
Query: 282      tcactgccatatctgaaccatgggtctttgtgagg 316
                ||||| | |||||||| ||| | ||||||||||||
Sbjct: 34887510 tcacttcaatatctgagccacgagtctttgtgagg 34887544



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                            
Query: 314      aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 373
                ||||| ||||||||||||||||| || || ||||| |||||||| || |||  ||| |||
Sbjct: 34888159 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 34888218

                                             
Query: 374      atgatgagtattanatcaacatcattttc 402
                |||||||| ||||  ||||||||||||||
Sbjct: 34888219 atgatgagcattaggtcaacatcattttc 34888247



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 17       gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
                |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 34886990 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 34887036



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>dbj|AK064539.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A02, full
           insert sequence
          Length = 1585

 Score =  168 bits (85), Expect = 1e-38
 Identities = 182/215 (84%)
 Strand = Plus / Minus

                                                                       
Query: 102 aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 161
           ||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 549 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 490

                                                                       
Query: 162 tgctccgctncgtgcagcagaaangtggatactctcatgtgatagcctcgtcgacgtcgt 221
           | || || |  || ||||| ||| |||||||||| ||||| ||||| || || || ||||
Sbjct: 489 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 430

                                                                       
Query: 222 tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 281
           |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct: 429 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 370

                                              
Query: 282 tcactgccatatctgaaccatgggtctttgtgagg 316
           ||||| | |||||||| ||| | ||||||||||||
Sbjct: 369 tcacttcaatatctgagccacgagtctttgtgagg 335



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 17  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 889 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 843



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>gb|BT018571.1| Zea mays clone EL01N0442H06.d mRNA sequence
          Length = 1324

 Score =  167 bits (84), Expect = 4e-38
 Identities = 240/293 (81%)
 Strand = Plus / Minus

                                                                        
Query: 131  gcgcatcctttagccgagccttgggccgagctgctccgctncgtgcagcagaaangtgga 190
            ||||||||| | || || || ||||||||||| ||||| | ||| ||||||||| | || 
Sbjct: 1021 gcgcatcctctggctgaaccctgggccgagctactccgttccgttcagcagaaaggaggc 962

                                                                        
Query: 191  tactctcatgtgatagcctcgtcgacgtcgttcgggaagaatttgcttccacgcgccgcg 250
            ||||||||||| ||||| || || || || ||||||||||||||||||||||| || |||
Sbjct: 961  tactctcatgtcatagcttcatccacatcattcgggaagaatttgcttccacgtgctgcg 902

                                                                        
Query: 251  gctcttctagatgtctcccctgtcacggacgtcactgccatatctgaaccatgggtcttt 310
            ||||| || ||||| |||||||| || || ||||| ||  ||   || |||   ||||||
Sbjct: 901  gctctccttgatgtgtcccctgttactgatgtcaccgctgtaaaggagccacacgtcttt 842

                                                                        
Query: 311  gtgaggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctcct 370
            ||||||||||||||||||||||||||||| || |||||   |||||| || |||   |||
Sbjct: 841  gtgaggccaatttatgctggaaatgcactttgtactgtgaaatatactggagaggggcct 782

                                                                 
Query: 371  tgtatgatgagtattanatcaacatcattttctctagctaccgagtctatgtc 423
            || ||||||||||||| |||||| |||||||| | |||||| ||| |||||||
Sbjct: 781  tgcatgatgagtattagatcaacttcattttccccagctactgaggctatgtc 729



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 15   tcgtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
            |||||||||| ||  || |||||||||||||||||||| |||| |||||
Sbjct: 1233 tcgtgagcacgctcgtcgtagcggagcacgaaggcgggttcgtcaagcc 1185



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>gb|AY107426.1| Zea mays PCO089573 mRNA sequence
          Length = 686

 Score =  105 bits (53), Expect = 1e-19
 Identities = 120/143 (83%)
 Strand = Plus / Plus

                                                                       
Query: 131 gcgcatcctttagccgagccttgggccgagctgctccgctncgtgcagcagaaangtgga 190
           ||||||||| | || || || ||||||||||| ||||| | ||| ||||||||| | || 
Sbjct: 378 gcgcatcctctggctgaaccctgggccgagctactccgttccgttcagcagaaaggaggc 437

                                                                       
Query: 191 tactctcatgtgatagcctcgtcgacgtcgttcgggaagaatttgcttccacgcgccgcg 250
           ||||||||||| ||||| || || || || ||||||||||||||||||||||| || |||
Sbjct: 438 tactctcatgtcatagcttcatccacatcattcgggaagaatttgcttccacgtgctgcg 497

                                  
Query: 251 gctcttctagatgtctcccctgt 273
           ||||| || ||||| ||||||||
Sbjct: 498 gctctccttgatgtgtcccctgt 520



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 15  tcgtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 63
           |||||||||| ||  || |||||||||||||||||||| |||| |||||
Sbjct: 166 tcgtgagcacgctcgtcgtagcggagcacgaaggcgggttcgtcaagcc 214



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>gb|AC139758.3| Mus musculus BAC clone RP23-367E7 from chromosome 14, complete sequence
          Length = 210969

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     gtctagccacccattggtcaa 99
              |||||||||||||||||||||
Sbjct: 149289 gtctagccacccattggtcaa 149309



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>gb|AC126243.3| Mus musculus BAC clone RP24-260I19 from chromosome 14, complete sequence
          Length = 180553

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 79     gtctagccacccattggtcaa 99
              |||||||||||||||||||||
Sbjct: 143462 gtctagccacccattggtcaa 143442



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>emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-14J7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162209

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   gggaagaatttgcttccacgc 244
             |||||||||||||||||||||
Sbjct: 99478 gggaagaatttgcttccacgc 99458



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>emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chromosome 12, complete
             sequence
          Length = 219782

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   tgcactctgcactgtacgat 353
             ||||||||||||||||||||
Sbjct: 99479 tgcactctgcactgtacgat 99498



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     tgatagcctcgtcgacgtcg 220
               ||||||||||||||||||||
Sbjct: 2594499 tgatagcctcgtcgacgtcg 2594480



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>gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-40I5, complete
              sequence
          Length = 241886

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tcaatgaggttcttgttgcg 115
              ||||||||||||||||||||
Sbjct: 193147 tcaatgaggttcttgttgcg 193166



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>gb|AC117530.2| Homo sapiens chromosome 5 clone RP11-294P1, complete sequence
          Length = 172442

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    gggaagaatttgcttccacg 243
              ||||||||||||||||||||
Sbjct: 129898 gggaagaatttgcttccacg 129917



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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     tggatactctcatgtgatag 206
               ||||||||||||||||||||
Sbjct: 1935761 tggatactctcatgtgatag 1935742



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>gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 231946

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tcaatgaggttcttgttgcg 115
              ||||||||||||||||||||
Sbjct: 133390 tcaatgaggttcttgttgcg 133409



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>gb|AC153905.5| Mus musculus 6 BAC RP23-215A7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215955

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    gagtctccttgtatgatgag 381
              ||||||||||||||||||||
Sbjct: 214964 gagtctccttgtatgatgag 214945



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>gb|AC153601.6| Mus musculus 6 BAC RP23-405O6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201911

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gagtctccttgtatgatgag 381
             ||||||||||||||||||||
Sbjct: 46299 gagtctccttgtatgatgag 46280



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>gb|CP000231.1| Rhodospirillum rubrum ATCC 11170 plasmid, complete sequence
          Length = 53732

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ccaatttatgctggaaatgc 336
             ||||||||||||||||||||
Sbjct: 49961 ccaatttatgctggaaatgc 49980



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>emb|AL691453.7| Mouse DNA sequence from clone RP23-17K2 on chromosome 4, complete
             sequence
          Length = 94498

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   tccttgtatgatgagtatta 386
             ||||||||||||||||||||
Sbjct: 72381 tccttgtatgatgagtatta 72362


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,458,393
Number of Sequences: 3902068
Number of extensions: 2458393
Number of successful extensions: 36478
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36383
Number of HSP's gapped (non-prelim): 94
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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