ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdi23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470008.1| Oryza sativa (japonica cultivar-group), mRNA 236 5e-59
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 236 5e-59
3gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 236 5e-59
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 236 5e-59
5dbj|AK066048.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 5e-59
6ref|XM_477035.1| Oryza sativa (japonica cultivar-group), mRNA 103 4e-19
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
8dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
9dbj|AK101736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
10gb|AC146760.13| Medicago truncatula clone mth2-174d3, complete s... 46 0.088
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
12dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
13dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
14emb|BX927317.12| Zebrafish DNA sequence from clone CH211-51I16 i... 42 1.4
15ref|XM_685298.1| PREDICTED: Danio rerio similar to Carbohydrate ... 42 1.4
16emb|BX248229.14| Zebrafish DNA sequence from clone CH211-126P4 i... 42 1.4
17emb|AL953878.19| Zebrafish DNA sequence from clone CH211-284P22 ... 42 1.4
18emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chr... 42 1.4
19gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.4
20gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 5.4
21ref|XM_752444.1| Ustilago maydis 521 hypothetical protein (UM013... 40 5.4
22ref|XM_388773.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 5.4
23gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete seq... 40 5.4
24gb|AY312168.1| Zea mays homeobox transcription factor GNARLY1 (g... 40 5.4
25emb|Z96074.4|HS399M14 Human DNA sequence from clone RP3-399M14 o... 40 5.4
26emb|BX247885.11| Human DNA sequence from clone RP4-669P10 on chr... 40 5.4
27ref|XM_501331.1| Yarrowia lipolytica CLIB122, YALI0C01463g predi... 40 5.4
28emb|AL356295.9| Human DNA sequence from clone RP11-768P11 on chr... 40 5.4
29gb|AC091617.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 5.4
30emb|BX069485.1|CNS09PS1 Single read from an extremity of a full-... 40 5.4
31emb|BX069484.1|CNS09PS0 Single read from an extremity of a full-... 40 5.4
32emb|BX068865.1|CNS09PAT Single read from an extremity of a full-... 40 5.4
33emb|BX026937.1|CNS08SY5 Single read from an extremity of a full-... 40 5.4
34emb|BX026936.1|CNS08SY4 Single read from an extremity of a full-... 40 5.4
35emb|BX025522.1|CNS08RUU Single read from an extremity of a full-... 40 5.4
36emb|BX025521.1|CNS08RUT Single read from an extremity of a full-... 40 5.4
37gb|DQ093358.1| Mus musculus tension induced/inhibited protein 3 ... 40 5.4
38gb|DQ093357.1| Mus musculus tension induced/inhibited protein 1 ... 40 5.4
39gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 5.4
40gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell ... 40 5.4
41gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell ... 40 5.4
42ref|NM_167335.1| Drosophila melanogaster Smrter CG4013-RC, trans... 40 5.4
43ref|NM_167334.1| Drosophila melanogaster Smrter CG4013-RB, trans... 40 5.4
44ref|NM_080536.2| Drosophila melanogaster Smrter CG4013-RA, trans... 40 5.4
45ref|NM_181492.1| Homo sapiens transcription factor 20 (AR1) (TCF... 40 5.4
46ref|NM_005650.1| Homo sapiens transcription factor 20 (AR1) (TCF... 40 5.4
47tpg|BK005744.1| TPA: TPA_exp: Drosophila melanogaster dosage com... 40 5.4
48dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
49gb|AF031418.3| Pseudomonas putida FliK (fliK), FliL, FliM (fliM)... 40 5.4
50ref|XM_347159.2| PREDICTED: Rattus norvegicus similar to uroplak... 40 5.4
51dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 5.4
52dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
53gb|AC004997.2|AC004997 Homo sapiens PAC clone RP1-130H16 from 22... 40 5.4
54gb|AF175223.1|AF175223 Drosophila melanogaster SANT domain prote... 40 5.4
55emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 5.4
56gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 ... 40 5.4
57gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.4
58emb|AL031346.8|HS597B2 Human DNA sequence from clone RP4-597B2 o... 40 5.4
59gb|AC005585.1|AC005585 Homo sapiens chromosome 22, clone hRPC.13... 40 5.4
60emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 5.4
61dbj|AB006630.1| Homo sapiens mRNA for KIAA0292 gene, partial cds 40 5.4 
>ref|XM_470008.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2457

 Score =  236 bits (119), Expect = 5e-59
 Identities = 151/162 (93%)
 Strand = Plus / Plus

                                                                       
Query: 147 ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 253

                                                                       
Query: 207 cgaggaatcggcgcccgcgactggtgctgctgctgcccctgttgccaaccaccanaactc 266
           ||||||||||||||||||||||||||||||| |  |||||||||| || ||||| |||||
Sbjct: 254 cgaggaatcggcgcccgcgactggtgctgctcccacccctgttgctaatcaccagaactc 313

                                                     
Query: 267 gcgtcccactcgcagctcttacgtccctcctcacctccgtgg 308
            || |||||||||||| | ||||| |||||||||||||||||
Sbjct: 314 acgccccactcgcagcgcatacgtgcctcctcacctccgtgg 355
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  236 bits (119), Expect = 5e-59
 Identities = 151/162 (93%)
 Strand = Plus / Minus

                                                                            
Query: 147      ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 206
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33312638 ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 33312579

                                                                            
Query: 207      cgaggaatcggcgcccgcgactggtgctgctgctgcccctgttgccaaccaccanaactc 266
                ||||||||||||||||||||||||||||||| |  |||||||||| || ||||| |||||
Sbjct: 33312578 cgaggaatcggcgcccgcgactggtgctgctcccacccctgttgctaatcaccagaactc 33312519

                                                          
Query: 267      gcgtcccactcgcagctcttacgtccctcctcacctccgtgg 308
                 || |||||||||||| | ||||| |||||||||||||||||
Sbjct: 33312518 acgccccactcgcagcgcatacgtgcctcctcacctccgtgg 33312477
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score =  236 bits (119), Expect = 5e-59
 Identities = 151/162 (93%)
 Strand = Plus / Minus

                                                                         
Query: 147   ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69154 ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 69095

                                                                         
Query: 207   cgaggaatcggcgcccgcgactggtgctgctgctgcccctgttgccaaccaccanaactc 266
             ||||||||||||||||||||||||||||||| |  |||||||||| || ||||| |||||
Sbjct: 69094 cgaggaatcggcgcccgcgactggtgctgctcccacccctgttgctaatcaccagaactc 69035

                                                       
Query: 267   gcgtcccactcgcagctcttacgtccctcctcacctccgtgg 308
              || |||||||||||| | ||||| |||||||||||||||||
Sbjct: 69034 acgccccactcgcagcgcatacgtgcctcctcacctccgtgg 68993
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  236 bits (119), Expect = 5e-59
 Identities = 151/162 (93%)
 Strand = Plus / Minus

                                                                            
Query: 147      ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 206
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33403148 ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 33403089

                                                                            
Query: 207      cgaggaatcggcgcccgcgactggtgctgctgctgcccctgttgccaaccaccanaactc 266
                ||||||||||||||||||||||||||||||| |  |||||||||| || ||||| |||||
Sbjct: 33403088 cgaggaatcggcgcccgcgactggtgctgctcccacccctgttgctaatcaccagaactc 33403029

                                                          
Query: 267      gcgtcccactcgcagctcttacgtccctcctcacctccgtgg 308
                 || |||||||||||| | ||||| |||||||||||||||||
Sbjct: 33403028 acgccccactcgcagcgcatacgtgcctcctcacctccgtgg 33402987
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>dbj|AK066048.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048C24, full
           insert sequence
          Length = 2458

 Score =  236 bits (119), Expect = 5e-59
 Identities = 151/162 (93%)
 Strand = Plus / Plus

                                                                       
Query: 147 ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgc 254

                                                                       
Query: 207 cgaggaatcggcgcccgcgactggtgctgctgctgcccctgttgccaaccaccanaactc 266
           ||||||||||||||||||||||||||||||| |  |||||||||| || ||||| |||||
Sbjct: 255 cgaggaatcggcgcccgcgactggtgctgctcccacccctgttgctaatcaccagaactc 314

                                                     
Query: 267 gcgtcccactcgcagctcttacgtccctcctcacctccgtgg 308
            || |||||||||||| | ||||| |||||||||||||||||
Sbjct: 315 acgccccactcgcagcgcatacgtgcctcctcacctccgtgg 356
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>ref|XM_477035.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2514

 Score =  103 bits (52), Expect = 4e-19
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                       
Query: 167 aaattatgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcga 226
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| 
Sbjct: 323 aaattatgcgatcttcatgggctgactcagctgcgaacgccgaggaatcggcgcccgcgg 382

                   
Query: 227 ctggtgct 234
           ||| ||||
Sbjct: 383 ctgctgct 390
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  103 bits (52), Expect = 4e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                           
Query: 167     aaattatgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcga 226
               ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| 
Sbjct: 5538147 aaattatgcgatcttcatgggctgactcagctgcgaacgccgaggaatcggcgcccgcgg 5538088

                       
Query: 227     ctggtgct 234
               ||| ||||
Sbjct: 5538087 ctgctgct 5538080
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0081K20
          Length = 117287

 Score =  103 bits (52), Expect = 4e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                         
Query: 167   aaattatgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcga 226
             ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| 
Sbjct: 51232 aaattatgcgatcttcatgggctgactcagctgcgaacgccgaggaatcggcgcccgcgg 51173

                     
Query: 227   ctggtgct 234
             ||| ||||
Sbjct: 51172 ctgctgct 51165
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>dbj|AK101736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061I19, full
           insert sequence
          Length = 2514

 Score =  103 bits (52), Expect = 4e-19
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                       
Query: 167 aaattatgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcga 226
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| 
Sbjct: 323 aaattatgcgatcttcatgggctgactcagctgcgaacgccgaggaatcggcgcccgcgg 382

                   
Query: 227 ctggtgct 234
           ||| ||||
Sbjct: 383 ctgctgct 390
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>gb|AC146760.13| Medicago truncatula clone mth2-174d3, complete sequence
          Length = 122316

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 171    tatgcgatcttcatgggctgatt 193
              |||||||||||||||||||||||
Sbjct: 115364 tatgcgatcttcatgggctgatt 115386
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 215      cggcgcccgcgactggtgctgctgctgccc 244
                ||||||||||||| | ||||||||||||||
Sbjct: 15901684 cggcgcccgcgacggctgctgctgctgccc 15901655
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>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0031P18
          Length = 156535

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 215   cggcgcccgcgactggtgctgctgctgccc 244
             ||||||||||||| | ||||||||||||||
Sbjct: 35133 cggcgcccgcgacggctgctgctgctgccc 35104
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>dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0026P23
          Length = 180188

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 215    cggcgcccgcgactggtgctgctgctgccc 244
              ||||||||||||| | ||||||||||||||
Sbjct: 114687 cggcgcccgcgacggctgctgctgctgccc 114658
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>emb|BX927317.12| Zebrafish DNA sequence from clone CH211-51I16 in linkage group 3,
             complete sequence
          Length = 131395

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93726 tgctgctgctgcccctgttgc 93746



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93666 tgctgctgctgcccctgttgc 93686



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93606 tgctgctgctgcccctgttgc 93626



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93576 tgctgctgctgcccctgttgc 93596



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93546 tgctgctgctgcccctgttgc 93566



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93516 tgctgctgctgcccctgttgc 93536



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93486 tgctgctgctgcccctgttgc 93506



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93453 tgctgctgctgcccctgttgc 93473



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   tgctgctgctgcccctgttgc 251
             |||||||||||||||||||||
Sbjct: 93423 tgctgctgctgcccctgttgc 93443
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>ref|XM_685298.1| PREDICTED: Danio rerio similar to Carbohydrate sulfotransferase 2
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-1) (Gn6st-1)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfotransferase 2) (GST-2) (LOC561896), mRNA
          Length = 2152

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 133 tccgccgtagcactttcatca 153
           |||||||||||||||||||||
Sbjct: 602 tccgccgtagcactttcatca 582
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>emb|BX248229.14| Zebrafish DNA sequence from clone CH211-126P4 in linkage group 2,
             complete sequence
          Length = 180233

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   tccgccgtagcactttcatca 153
             |||||||||||||||||||||
Sbjct: 81699 tccgccgtagcactttcatca 81679
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>emb|AL953878.19| Zebrafish DNA sequence from clone CH211-284P22 in linkage group 3,
              complete sequence
          Length = 158134

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 132080 tgctgctgctgcccctgttgc 132100



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 132020 tgctgctgctgcccctgttgc 132040



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 131990 tgctgctgctgcccctgttgc 132010



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 131960 tgctgctgctgcccctgttgc 131980



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 131930 tgctgctgctgcccctgttgc 131950



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 131900 tgctgctgctgcccctgttgc 131920



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 131870 tgctgctgctgcccctgttgc 131890



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 131837 tgctgctgctgcccctgttgc 131857



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 131807 tgctgctgctgcccctgttgc 131827



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgctgctgctgcccctgttgc 251
              |||||||||||||||||||||
Sbjct: 131777 tgctgctgctgcccctgttgc 131797
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>emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chromosome 4, complete
             sequence
          Length = 189970

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 234   tgctgctgcccctgttgccaaccac 258
             |||||||||||||| ||||||||||
Sbjct: 36163 tgctgctgcccctgatgccaaccac 36187
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 227    ctggtgctgctgctgcccctgttg 250
              ||||||||||||||| ||||||||
Sbjct: 434953 ctggtgctgctgctgaccctgttg 434930
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 142     gcactttcatcaaaggtttt 161
               ||||||||||||||||||||
Sbjct: 5948822 gcactttcatcaaaggtttt 5948803
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>ref|XM_752444.1| Ustilago maydis 521 hypothetical protein (UM01390.1) partial mRNA
          Length = 1554

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 232 gctgctgctgcccctgttgccaac 255
           |||||||||||||||| |||||||
Sbjct: 655 gctgctgctgcccctgctgccaac 678
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>ref|XM_388773.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08597.1)
            partial mRNA
          Length = 1863

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 229  ggtgctgctgctgcccctgttgcc 252
            ||||||||| ||||||||||||||
Sbjct: 1825 ggtgctgctcctgcccctgttgcc 1848
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>gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete sequence
          Length = 111446

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   tggtgctgctgctgcccctg 247
             ||||||||||||||||||||
Sbjct: 13351 tggtgctgctgctgcccctg 13332
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>gb|AY312168.1| Zea mays homeobox transcription factor GNARLY1 (gn1) gene, complete
            cds
          Length = 17631

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  gcgactggtgctgctgctgc 242
            ||||||||||||||||||||
Sbjct: 7120 gcgactggtgctgctgctgc 7101
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>emb|Z96074.4|HS399M14 Human DNA sequence from clone RP3-399M14 on chromosome Xq26.1-26.3,
             complete sequence
          Length = 155661

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   tcaaaggttttgtgcaaaat 170
             ||||||||||||||||||||
Sbjct: 38180 tcaaaggttttgtgcaaaat 38161
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>emb|BX247885.11| Human DNA sequence from clone RP4-669P10 on chromosome 22q13.31-13.33,
             complete sequence
          Length = 133246

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   tgctgctgctgcccctgttg 250
             ||||||||||||||||||||
Sbjct: 93847 tgctgctgctgcccctgttg 93866
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>ref|XM_501331.1| Yarrowia lipolytica CLIB122, YALI0C01463g predicted mRNA
          Length = 2619

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 227  ctggtgctgctgctgcccctgttg 250
            ||||||||||||||| ||||||||
Sbjct: 1206 ctggtgctgctgctgtccctgttg 1183
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>emb|AL356295.9| Human DNA sequence from clone RP11-768P11 on chromosome 13, complete
              sequence
          Length = 134347

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    tagctgcaggcccaacacca 357
              ||||||||||||||||||||
Sbjct: 118228 tagctgcaggcccaacacca 118209
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>gb|AC091617.2| Rattus norvegicus strain Brown Norway clone RP31-371K3, complete
             sequence
          Length = 150494

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   tgctgctgctgcccctgttg 250
             ||||||||||||||||||||
Sbjct: 44457 tgctgctgctgcccctgttg 44476
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>emb|BX069485.1|CNS09PS1 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC6AF10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 737

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 gcgactggtgctgctgctgc 242
           ||||||||||||||||||||
Sbjct: 140 gcgactggtgctgctgctgc 121
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>emb|BX069484.1|CNS09PS0 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC6AF10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 829

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 gcgactggtgctgctgctgc 242
           ||||||||||||||||||||
Sbjct: 641 gcgactggtgctgctgctgc 660
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>emb|BX068865.1|CNS09PAT Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC53BC02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1033

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 gcgactggtgctgctgctgc 242
           ||||||||||||||||||||
Sbjct: 781 gcgactggtgctgctgctgc 800
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>emb|BX026937.1|CNS08SY5 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA40BF09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1014

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 gcgactggtgctgctgctgc 242
           ||||||||||||||||||||
Sbjct: 243 gcgactggtgctgctgctgc 224
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>emb|BX026936.1|CNS08SY4 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA40BF09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1068

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 gcgactggtgctgctgctgc 242
           ||||||||||||||||||||
Sbjct: 805 gcgactggtgctgctgctgc 824
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>emb|BX025522.1|CNS08RUU Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA39AE12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 843

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 gcgactggtgctgctgctgc 242
           ||||||||||||||||||||
Sbjct: 239 gcgactggtgctgctgctgc 220
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>emb|BX025521.1|CNS08RUT Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA39AE12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 892

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 gcgactggtgctgctgctgc 242
           ||||||||||||||||||||
Sbjct: 800 gcgactggtgctgctgctgc 819
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>gb|DQ093358.1| Mus musculus tension induced/inhibited protein 3 mRNA, complete cds
          Length = 2400

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 375 gggtgctgtgcagccttctggtgg 398
           |||||||||||||||| |||||||
Sbjct: 53  gggtgctgtgcagcctcctggtgg 76
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>gb|DQ093357.1| Mus musculus tension induced/inhibited protein 1 mRNA, complete cds
          Length = 2285

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 375 gggtgctgtgcagccttctggtgg 398
           |||||||||||||||| |||||||
Sbjct: 53  gggtgctgtgcagcctcctggtgg 76
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 340     gctgcaggcccaacaccagc 359
               ||||||||||||||||||||
Sbjct: 1614876 gctgcaggcccaacaccagc 1614857
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>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 160440

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   gcgactggtgctgctgctgc 242
             ||||||||||||||||||||
Sbjct: 74123 gcgactggtgctgctgctgc 74142
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>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 187921

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  gcgactggtgctgctgctgc 242
            ||||||||||||||||||||
Sbjct: 9317 gcgactggtgctgctgctgc 9336
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>ref|NM_167335.1| Drosophila melanogaster Smrter CG4013-RC, transcript variant C (Smr),
            mRNA
          Length = 13475

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  gcgactggtgctgctgctgc 242
            ||||||||||||||||||||
Sbjct: 1944 gcgactggtgctgctgctgc 1925
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>ref|NM_167334.1| Drosophila melanogaster Smrter CG4013-RB, transcript variant B (Smr),
            mRNA
          Length = 12702

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  gcgactggtgctgctgctgc 242
            ||||||||||||||||||||
Sbjct: 1171 gcgactggtgctgctgctgc 1152
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>ref|NM_080536.2| Drosophila melanogaster Smrter CG4013-RA, transcript variant A (Smr),
            mRNA
          Length = 12622

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  gcgactggtgctgctgctgc 242
            ||||||||||||||||||||
Sbjct: 1091 gcgactggtgctgctgctgc 1072
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>ref|NM_181492.1| Homo sapiens transcription factor 20 (AR1) (TCF20), transcript
            variant 2, mRNA
          Length = 7279

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  tgctgctgctgcccctgttg 250
            ||||||||||||||||||||
Sbjct: 1081 tgctgctgctgcccctgttg 1062
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>ref|NM_005650.1| Homo sapiens transcription factor 20 (AR1) (TCF20), transcript
            variant 1, mRNA
          Length = 7407

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  tgctgctgctgcccctgttg 250
            ||||||||||||||||||||
Sbjct: 1081 tgctgctgctgcccctgttg 1062
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>tpg|BK005744.1| TPA: TPA_exp: Drosophila melanogaster dosage compensation complex
            binding fragment 12, complete sequence
          Length = 5163

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  gcgactggtgctgctgctgc 242
            ||||||||||||||||||||
Sbjct: 2506 gcgactggtgctgctgctgc 2525
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 215      cggcgcccgcgactggtgctgctgctgc 242
                ||||||||||| ||| ||||||||||||
Sbjct: 20020576 cggcgcccgcggctgctgctgctgctgc 20020549
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>gb|AF031418.3| Pseudomonas putida FliK (fliK), FliL, FliM (fliM), FliN (fliN),
           FliO (fliO), FliP (fliP), FliQ (fliQ), FliR (fliR), and
           FlhB (flhB) genes, complete cds; and unknown gene
          Length = 10493

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 215 cggcgcccgcgactggtgctgctg 238
           |||||||||| |||||||||||||
Sbjct: 492 cggcgcccgcaactggtgctgctg 515
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>ref|XM_347159.2| PREDICTED: Rattus norvegicus similar to uroplakin 3B isoform b
           (LOC367994), mRNA
          Length = 927

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 tgctgctgctgcccctgttg 250
           ||||||||||||||||||||
Sbjct: 26  tgctgctgctgcccctgttg 45
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     gcactttcatcaaaggtttt 161
               ||||||||||||||||||||
Sbjct: 1968122 gcactttcatcaaaggtttt 1968141
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>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0014M17
          Length = 156778

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 215    cggcgcccgcgactggtgctgctgctgc 242
              ||||||||||| ||| ||||||||||||
Sbjct: 124697 cggcgcccgcggctgctgctgctgctgc 124670
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>gb|AC004997.2|AC004997 Homo sapiens PAC clone RP1-130H16 from 22q12.1-qter, complete sequence
          Length = 109238

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 226    actggtgctgctgctgcccctgttgcca 253
              |||| ||||||||||||||||| |||||
Sbjct: 103223 actgctgctgctgctgcccctgctgcca 103196
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>gb|AF175223.1|AF175223 Drosophila melanogaster SANT domain protein SMRTER (Smrter) mRNA,
           complete cds
          Length = 11296

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 gcgactggtgctgctgctgc 242
           ||||||||||||||||||||
Sbjct: 487 gcgactggtgctgctgctgc 468
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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 204     cgccgaggaatcggcgcccgcgac 227
               |||||||||| |||||||||||||
Sbjct: 1620300 cgccgaggaaccggcgcccgcgac 1620323
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>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete
             sequence
          Length = 302665

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   gcgactggtgctgctgctgc 242
             ||||||||||||||||||||
Sbjct: 91244 gcgactggtgctgctgctgc 91263
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 215     cggcgcccgcgactggtgctgctg 238
               |||||||||| |||||||||||||
Sbjct: 4954286 cggcgcccgcaactggtgctgctg 4954263
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>emb|AL031346.8|HS597B2 Human DNA sequence from clone RP4-597B2 on chromosome 22q13.2-13.32
            Contains an exon of the TCF20 gene for transcription
            factor 20 (AR1,KIAA0292), ESTs and GSSs, complete
            sequence
          Length = 43761

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 231  tgctgctgctgcccctgttg 250
            ||||||||||||||||||||
Sbjct: 5505 tgctgctgctgcccctgttg 5524
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>gb|AC005585.1|AC005585 Homo sapiens chromosome 22, clone hRPC.130_H_16, complete sequence
          Length = 158257

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 226    actggtgctgctgctgcccctgttgcca 253
              |||| ||||||||||||||||| |||||
Sbjct: 103023 actgctgctgctgctgcccctgctgcca 102996
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 227    ctggtgctgctgctgcccctgttg 250
              ||||||||||||||| ||||||||
Sbjct: 207109 ctggtgctgctgctgtccctgttg 207086
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>dbj|AB006630.1| Homo sapiens mRNA for KIAA0292 gene, partial cds
          Length = 6542

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 tgctgctgctgcccctgttg 250
           ||||||||||||||||||||
Sbjct: 216 tgctgctgctgcccctgttg 197


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,677,608
Number of Sequences: 3902068
Number of extensions: 2677608
Number of successful extensions: 58826
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58460
Number of HSP's gapped (non-prelim): 366
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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