ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdi01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (E... 373 e-103
2RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (E... 336 3e-92
3RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (E... 334 1e-91
4RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (E... 330 2e-90
5RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (E... 324 1e-88
6RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (E... 321 9e-88
7RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (E... 224 2e-58
8RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (E... 216 4e-56
9RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (E... 212 6e-55
10RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (E... 206 5e-53
11RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (E... 195 7e-50
12RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (E... 193 3e-49
13RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (E... 191 1e-48
14RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (E... 191 1e-48
15RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (E... 191 1e-48
16RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (E... 189 7e-48
17RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (E... 188 9e-48
18RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (E... 187 3e-47
19RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (E... 181 1e-45
20RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (E... 181 1e-45
21RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (E... 180 2e-45
22RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (E... 176 3e-44
23RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (E... 168 9e-42
24RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC ... 160 3e-39
25RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (E... 157 2e-38
26RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (E... 156 4e-38
27RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (E... 151 2e-36
28RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (E... 144 1e-34
29RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (E... 101 2e-21
30RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (E... 90 6e-18
31RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (E... 84 4e-16
32RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (E... 70 5e-12
33RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (E... 66 7e-11
34RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (E... 63 7e-10
35RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (E... 40 0.004
36HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2... 32 1.8
37RAD59_ASHGO (Q757G7) DNA repair protein RAD59 31 3.1
38MYO5B_RAT (P70569) Myosin-5B (Myosin Vb) (Myosin heavy chain myr 6) 30 5.3
39APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [... 30 5.3
40YBA4_YEAST (P35194) Hypothetical 287.5 kDa protein in PDR3-HTA2 ... 30 5.3
41AMYG_DEBOC (P22861) Glucoamylase 1 precursor (EC 3.2.1.3) (Gluca... 29 9.0 
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1479

 Score =  373 bits (958), Expect = e-103
 Identities = 188/198 (94%), Positives = 188/198 (94%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFI HENSKLTQRIYHTNSQFV
Sbjct: 886  FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFISHENSKLTQRIYHTNSQFV 945

Query: 182  RTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPHN 361
            RTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTS GP PHN
Sbjct: 946  RTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSAGPIPHN 1005

Query: 362  RLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSKHPN 541
            RLDRAN NSFYSKAKIESLSQH EAIGTLLNRNKEY SLMILSASNCSRIGLFKNSKHPN
Sbjct: 1006 RLDRANINSFYSKAKIESLSQHPEAIGTLLNRNKEYHSLMILSASNCSRIGLFKNSKHPN 1065

Query: 542  AIKEWNPXIPILXIXGPL 595
            AIKEWNP IPI  I GPL
Sbjct: 1066 AIKEWNPRIPIREIFGPL 1083
to top
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1534

 Score =  336 bits (862), Expect = 3e-92
 Identities = 172/198 (86%), Positives = 180/198 (90%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FVSVRP VAYEMDEGRNLATLFPQDLLQEE+NLQ+RLVNFI HENSKLTQRIYHTNSQFV
Sbjct: 930  FVSVRPAVAYEMDEGRNLATLFPQDLLQEEDNLQLRLVNFISHENSKLTQRIYHTNSQFV 989

Query: 182  RTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPHN 361
            RTCLVVNWEQEEKE A ASLVEVR NDLIRDFLRIELVKSTISYTR+RYDRTS G  P+N
Sbjct: 990  RTCLVVNWEQEEKEGARASLVEVRTNDLIRDFLRIELVKSTISYTRRRYDRTSVGLIPNN 1049

Query: 362  RLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSKHPN 541
            RLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SLMIL ASNCSRIGLFKNSK+PN
Sbjct: 1050 RLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSLMILLASNCSRIGLFKNSKYPN 1109

Query: 542  AIKEWNPXIPILXIXGPL 595
            A+KE NP IPI  I G L
Sbjct: 1110 AVKESNPRIPIRDIFGLL 1127
to top
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1534

 Score =  334 bits (856), Expect = 1e-91
 Identities = 171/198 (86%), Positives = 179/198 (90%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP VAYEMDEGRNLATLFPQDLLQEE+NLQ+RLVNFI HENSKLTQRIYHTNSQFV
Sbjct: 930  FVLVRPAVAYEMDEGRNLATLFPQDLLQEEDNLQLRLVNFISHENSKLTQRIYHTNSQFV 989

Query: 182  RTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPHN 361
            RTCLVVNWEQEEKE A ASLVEVR NDLIRDFLRIELVKSTISYTR+RYDRTS G  P+N
Sbjct: 990  RTCLVVNWEQEEKEGARASLVEVRTNDLIRDFLRIELVKSTISYTRRRYDRTSVGLIPNN 1049

Query: 362  RLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSKHPN 541
            RLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SLMIL ASNCSRIGLFKNSK+PN
Sbjct: 1050 RLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSLMILLASNCSRIGLFKNSKYPN 1109

Query: 542  AIKEWNPXIPILXIXGPL 595
            A+KE NP IPI  I G L
Sbjct: 1110 AVKESNPRIPIRDIFGLL 1127
to top
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1527

 Score =  330 bits (845), Expect = 2e-90
 Identities = 169/198 (85%), Positives = 178/198 (89%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FVSVRP VAYEMDEG NLATLFPQDLLQEE+NLQ+RLVNFI HENSKLTQRIYHTNSQFV
Sbjct: 923  FVSVRPAVAYEMDEGINLATLFPQDLLQEEDNLQLRLVNFISHENSKLTQRIYHTNSQFV 982

Query: 182  RTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPHN 361
            RTCLVVNWEQEEKE A ASLVEV+ NDLIRDFLRIELVKSTI YTR+RYDRTS G  P+N
Sbjct: 983  RTCLVVNWEQEEKEGARASLVEVKTNDLIRDFLRIELVKSTILYTRRRYDRTSVGLIPNN 1042

Query: 362  RLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSKHPN 541
            RLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SLMIL ASNCSRIGLFKNSK+PN
Sbjct: 1043 RLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSLMILLASNCSRIGLFKNSKYPN 1102

Query: 542  AIKEWNPXIPILXIXGPL 595
            A+KE NP IPI  I G L
Sbjct: 1103 AVKESNPRIPIRDIFGLL 1120
to top
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1513

 Score =  324 bits (831), Expect = 1e-88
 Identities = 163/196 (83%), Positives = 174/196 (88%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP VAYEM+EGRNLATLFPQDLLQEE NLQ+RLVNFI HENSKLTQRIYHTNSQFV
Sbjct: 904  FVLVRPAVAYEMNEGRNLATLFPQDLLQEEGNLQLRLVNFISHENSKLTQRIYHTNSQFV 963

Query: 182  RTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPHN 361
            RTCLV+NWEQEEKE+A ASLVE+RAN LIRDFLRI L+KSTISYTRKRYD  S G   HN
Sbjct: 964  RTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIKSTISYTRKRYDSRSAGLILHN 1023

Query: 362  RLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSKHPN 541
            RLDR N+NSFYSKAKI+SLSQHQEAIGTLLNRNKEYQSLM+LSASNCSRIG FKNSK+PN
Sbjct: 1024 RLDRTNTNSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSLMVLSASNCSRIGFFKNSKNPN 1083

Query: 542  AIKEWNPXIPILXIXG 589
             +KE NP IPI    G
Sbjct: 1084 GVKESNPRIPIPKFFG 1099
to top
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1513

 Score =  321 bits (823), Expect = 9e-88
 Identities = 160/191 (83%), Positives = 172/191 (90%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP VAYEM+EGRNLATLFPQDL +EE NLQ+RLVNFI HENSKLTQRIYHTNSQFV
Sbjct: 904  FVLVRPAVAYEMNEGRNLATLFPQDLFEEEGNLQLRLVNFISHENSKLTQRIYHTNSQFV 963

Query: 182  RTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPHN 361
            RTCLV+NWEQEEKE+A ASLVE+RAN LIRDFLRI L+KSTISYTRKRYD  S G   HN
Sbjct: 964  RTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIKSTISYTRKRYDSRSAGLILHN 1023

Query: 362  RLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSKHPN 541
            RLDR N+NSFYSKAKI+SLSQHQEAIGTLLNRNKEYQSLM+LSASNCSRIG FKNSK+PN
Sbjct: 1024 RLDRTNTNSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSLMVLSASNCSRIGFFKNSKNPN 1083

Query: 542  AIKEWNPXIPI 574
             +KE NP IPI
Sbjct: 1084 GVKESNPRIPI 1094
to top
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1388

 Score =  224 bits (570), Expect = 2e-58
 Identities = 118/203 (58%), Positives = 145/203 (71%), Gaps = 5/203 (2%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NLATLF QDLLQE+NN+Q+R+VN+I +EN K  + I HT+ Q V
Sbjct: 777  FVLVRPVVTYEIADGINLATLFSQDLLQEKNNVQLRIVNYILYENGKSIRGISHTSIQLV 836

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            R CLV+ W+QE+K    EK  AS VE+R NDL+  F+RIELVKST+SYT KRYD    G 
Sbjct: 837  RACLVLTWDQEKKSSIEEKVHASFVEIRTNDLLCYFIRIELVKSTLSYTEKRYDTAGSGL 896

Query: 350  TPHNRLDRAN-SNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKN 526
              +N LDR +  N F SKAKI+   QHQ  +GTLLNRNKE QS +ILS+SNCSRIG F  
Sbjct: 897  ISNNELDRIHRKNPFDSKAKIQIFPQHQGTLGTLLNRNKECQSFLILSSSNCSRIGPFNT 956

Query: 527  SKHPNAIKEWNPXIPILXIXGPL 595
            S++ NA KE +P  PI  + GPL
Sbjct: 957  SRYNNATKELDPMTPIRYLLGPL 979
to top
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1373

 Score =  216 bits (550), Expect = 4e-56
 Identities = 120/208 (57%), Positives = 147/208 (70%), Gaps = 10/208 (4%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FVSVRP V YE+ +G NLAT FPQDLLQE+NNLQ+R+VN+I + + K  + I+HT+ Q V
Sbjct: 770  FVSVRPVVTYEIADGINLATFFPQDLLQEKNNLQLRVVNYILYGDGKPIRGIFHTSIQLV 829

Query: 182  RTCLVVNWEQE-----EKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGG 346
            RTCLV+NW+Q+     E+E+A  SL EVR NDLIR+F+RI+LVKS IS T K  D    G
Sbjct: 830  RTCLVLNWDQDRAGSIEEEEAYTSLAEVRVNDLIRNFIRIDLVKSPISSTGKENDMAGSG 889

Query: 347  PTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQ--SLMILSASNCSRIGLF 520
              P+N  DR N+N F+SKAK +SLSQHQ  I TLLNRNKE Q  SLM+LS+SNCSRIG  
Sbjct: 890  LIPNNGSDRINTNPFFSKAKTQSLSQHQGTIRTLLNRNKEGQGESLMVLSSSNCSRIGPL 949

Query: 521  KNSKHPNAIKE---WNPXIPILXIXGPL 595
              SK+ N  KE    +P I I    GPL
Sbjct: 950  NGSKYHNVTKESIQEDPMISIRNSLGPL 977
to top
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1377

 Score =  212 bits (540), Expect = 6e-55
 Identities = 117/206 (56%), Positives = 142/206 (68%), Gaps = 8/206 (3%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NL TLFPQD LQE +N+Q+R+VN+I + N K  + I HT+ Q V
Sbjct: 777  FVLVRPVVTYEIADGINLETLFPQDPLQERDNVQLRVVNYILYGNGKPIRGISHTSLQLV 836

Query: 182  RTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPT 352
            RTCLV+NW+Q+     E+  AS VEVRAN LIRDFL+I+LVKS I Y+ KR D TS G  
Sbjct: 837  RTCLVLNWDQDRNGSIEEVHASFVEVRANGLIRDFLKIDLVKSPILYSGKRNDTTSSGFI 896

Query: 353  PHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSK 532
            P+N  DR N N FY KA+I+SL+QHQ  I TLLNRNKE QS +ILS+S+CSRIG F  SK
Sbjct: 897  PNNGSDRTNINPFYFKARIQSLTQHQGTIRTLLNRNKECQSFLILSSSDCSRIGSFNGSK 956

Query: 533  HPNAIKE-----WNPXIPILXIXGPL 595
                 KE      +P IPI    GPL
Sbjct: 957  SHKVTKESITIKEDPTIPIRNSLGPL 982
to top
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1386

 Score =  206 bits (523), Expect = 5e-53
 Identities = 116/204 (56%), Positives = 136/204 (66%), Gaps = 6/204 (2%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP   YE+ +G NLATLFPQDLLQE +N+Q+R+VN+I + N K  + I HT+ Q V
Sbjct: 776  FVLVRPVATYEIADGINLATLFPQDLLQERDNVQLRVVNYILYGNGKPIRGISHTSIQLV 835

Query: 182  RTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPT 352
            RTCLV+NW+QE+    E   AS VEVRANDLIRDF+RIEL KS I YT KR D    G  
Sbjct: 836  RTCLVLNWDQEQNGSIEGVRASFVEVRANDLIRDFIRIELCKSAILYTGKRKDIAGSGLI 895

Query: 353  PHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSK 532
              N  DR N N  Y K KI S  QHQ  +GTLLNRNKE QSL++LS+SNC RIG F  SK
Sbjct: 896  HDNVSDRTNINPVYLKDKIPSFIQHQGTVGTLLNRNKECQSLILLSSSNCFRIGPFNGSK 955

Query: 533  HPNAIKE---WNPXIPILXIXGPL 595
            + N  KE    +P IPI    G L
Sbjct: 956  YHNVPKESIKEDPIIPIRDSLGLL 979
to top
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1401

 Score =  195 bits (496), Expect = 7e-50
 Identities = 113/206 (54%), Positives = 143/206 (69%), Gaps = 8/206 (3%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FVSVRP V YE+ +G NL TLFP D+LQE++NL++++VN+I + + K  + I HT+ Q V
Sbjct: 781  FVSVRPVVTYEIADGINLVTLFPGDMLQEKDNLRLQVVNYILYGDGKPIRGISHTSIQLV 840

Query: 182  RTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPT 352
            RTCLV+NW+Q++K   EK  AS  EVRANDLIR F+RI+LVKS I YT KR DR SG   
Sbjct: 841  RTCLVLNWDQDKKGSIEKVQASSAEVRANDLIRYFIRIDLVKSPILYTGKRNDR-SGSVI 899

Query: 353  PHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSK 532
            P      AN+N F SK KI+SLSQHQ  + T LNRNKE QSL++ S+SNCSRI +   SK
Sbjct: 900  PDTGSYCANTNLFSSKVKIKSLSQHQGTVRTFLNRNKEGQSLIVFSSSNCSRINV---SK 956

Query: 533  HPNAIKE-----WNPXIPILXIXGPL 595
            + N  KE      +  IPIL + GPL
Sbjct: 957  YHNVTKESIKEKEDTPIPILNLLGPL 982
to top
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1392

 Score =  193 bits (491), Expect = 3e-49
 Identities = 116/211 (54%), Positives = 141/211 (66%), Gaps = 13/211 (6%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NLATLFP D LQE +N+Q+R+VN+I + N K  + I  T+ Q V
Sbjct: 776  FVLVRPVVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLV 835

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW Q++K    E+A AS VE+R N LIR FLRI LVKS ISY  KR D +  G 
Sbjct: 836  RTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGL 895

Query: 350  TPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRI 511
               N  D  N N F     YSKAKI +SL+Q Q  I TLLNRNKE QSL+ILSA+NCSR+
Sbjct: 896  LSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTLLNRNKECQSLIILSAANCSRM 955

Query: 512  GLFKNSKHPNAIKE---WNPXIPILXIXGPL 595
            G FK+ K+ + IKE    +P IPI    GPL
Sbjct: 956  GPFKDVKYHSVIKESIKKDPLIPIRNSLGPL 986
to top
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1392

 Score =  191 bits (486), Expect = 1e-48
 Identities = 112/208 (53%), Positives = 138/208 (66%), Gaps = 10/208 (4%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NLATLFP DLLQE +N+Q+R+VN+I + N K  + I  T+ Q V
Sbjct: 777  FVLVRPVVTYEVLDGINLATLFPPDLLQERDNMQLRVVNYIVYRNGKPIRGISDTSIQLV 836

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGG- 346
            RTCL++NW+Q++K    E+A  S VEV  N LIRDFLRI+LVK  ISY RKR D +  G 
Sbjct: 837  RTCLILNWDQDKKSSSIEEAHTSFVEVSTNGLIRDFLRIDLVKFPISYLRKRNDPSGSGL 896

Query: 347  -PTPHNRLDRANSNSFYSKAKIES-LSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLF 520
                 N  D  NSN FYSK KI+  LSQ+Q  I TLLN+NKE  SL+ILS+SNC R+G F
Sbjct: 897  ISDSDNVSDHTNSNPFYSKTKIQQLLSQNQGTIRTLLNKNKECPSLIILSSSNCFRMGPF 956

Query: 521  KNSKHPNAIKE---WNPXIPILXIXGPL 595
               K+ N IKE    +P I I    GPL
Sbjct: 957  NAGKYHNVIKESIKKDPIIKIRNSIGPL 984
to top
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1388

 Score =  191 bits (485), Expect = 1e-48
 Identities = 114/211 (54%), Positives = 141/211 (66%), Gaps = 13/211 (6%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NLATLFP D LQE +N+Q+R+VN+I + N K  + I  T+ Q V
Sbjct: 772  FVLVRPVVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLV 831

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW Q++K    E+A AS VE+R N LIR FLRI LVKS ISY  KR D +  G 
Sbjct: 832  RTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGL 891

Query: 350  TPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRI 511
               N  D  N N F     YSKAKI +S++Q Q  I TLLNRNKE QSL+ILSA+NCSR+
Sbjct: 892  LSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRM 951

Query: 512  GLFKNSKHPNAIK---EWNPXIPILXIXGPL 595
            G FK+ K+ + IK   + +P IPI    GPL
Sbjct: 952  GPFKDVKYHSVIKKSIKKDPLIPIRNSLGPL 982
to top
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1392

 Score =  191 bits (485), Expect = 1e-48
 Identities = 114/211 (54%), Positives = 141/211 (66%), Gaps = 13/211 (6%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NLATLFP D LQE +N+Q+R+VN+I + N K  + I  T+ Q V
Sbjct: 776  FVLVRPVVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLV 835

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW Q++K    E+A AS VE+R N LIR FLRI LVKS ISY  KR D +  G 
Sbjct: 836  RTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGL 895

Query: 350  TPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRI 511
               N  D  N N F     YSKAKI +S++Q Q  I TLLNRNKE QSL+ILSA+NCSR+
Sbjct: 896  LSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRM 955

Query: 512  GLFKNSKHPNAIK---EWNPXIPILXIXGPL 595
            G FK+ K+ + IK   + +P IPI    GPL
Sbjct: 956  GPFKDVKYHSVIKKSIKKDPLIPIRNSLGPL 986
to top
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1387

 Score =  189 bits (479), Expect = 7e-48
 Identities = 112/211 (53%), Positives = 140/211 (66%), Gaps = 13/211 (6%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NLATLF  DLLQE +N+Q+R+VN+I +   K  +  Y T+ Q V
Sbjct: 773  FVLVRPVVTYEITDGINLATLFFPDLLQERDNVQLRVVNYILYGTGKPIRGFYDTSIQLV 832

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW Q++K    E+A  S VE+R N LIRDFL+I+L KS I YT KR D +  G 
Sbjct: 833  RTCLVLNWVQDKKSSSIEEARTSFVEIRINSLIRDFLKIDLAKSPILYTGKRKDPSGSGL 892

Query: 350  TPHNRLDRAN-----SNSFYSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRI 511
               N  DR N     S+ FYSKA+I ESL+Q+Q  I TLLNRNKE QSL+ILS+SNC R+
Sbjct: 893  ISENGSDRTNINPFSSSFFYSKARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRM 952

Query: 512  GLFKNSKHPNAIKE---WNPXIPILXIXGPL 595
            G F + K+ N IKE    +P I I    GPL
Sbjct: 953  GPFNDVKYHNVIKESIQKDPLIQIRNSLGPL 983
to top
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1381

 Score =  188 bits (478), Expect = 9e-48
 Identities = 114/208 (54%), Positives = 140/208 (67%), Gaps = 10/208 (4%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV V+P V Y+  +G NL  LFP DLLQE +NLQ+R+VN+I + +  L   I+ T+ Q V
Sbjct: 776  FVLVQPVVPYKKTDGINLGRLFPPDLLQESDNLQLRVVNYILYYDPIL--EIWDTSIQLV 833

Query: 182  RTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPH 358
            RT LV+NW+Q++K EKA AS VE+R N L+R FLRI+L KS ISYT KR D +  G    
Sbjct: 834  RTSLVLNWDQDKKIEKACASFVEIRTNGLLRYFLRIDLAKSPISYTGKRNDLSGSGLISE 893

Query: 359  NRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLF 520
            N  DRAN N F     YSK++I ESL+ +Q  I TLLNRNKE QSL+ILS+SNC RIG F
Sbjct: 894  NGSDRANVNPFSSIYSYSKSRIKESLNPNQGTIHTLLNRNKESQSLIILSSSNCFRIGPF 953

Query: 521  KNSKHPNAIKE---WNPXIPILXIXGPL 595
             + K PN IKE    NP IPI    GPL
Sbjct: 954  NDVKSPNVIKESIKKNPLIPIRNSLGPL 981
to top
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1392

 Score =  187 bits (474), Expect = 3e-47
 Identities = 113/211 (53%), Positives = 138/211 (65%), Gaps = 13/211 (6%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NL TLFP D LQE +N+Q+R+VN+I + N K  + I  T+ Q V
Sbjct: 776  FVLVRPVVTYEITDGINLGTLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLV 835

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW Q++K    E+A AS VE+R N LIR FLRI LVKS ISY  KR D +  G 
Sbjct: 836  RTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGL 895

Query: 350  TPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRI 511
               N  D  N N F     Y KAKI +SL+Q Q  I TLLNRNKE QSL+ILSA+NCSR+
Sbjct: 896  LSDNGSDCTNINPFSAIYSYPKAKIQQSLNQPQGTIHTLLNRNKECQSLIILSAANCSRM 955

Query: 512  GLFKNSKHPNAIKE---WNPXIPILXIXGPL 595
              FK+ K+ + IKE    +P IPI    GPL
Sbjct: 956  EPFKDVKYHSVIKESIKKDPLIPIRNSLGPL 986
to top
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1389

 Score =  181 bits (460), Expect = 1e-45
 Identities = 111/209 (53%), Positives = 138/209 (66%), Gaps = 11/209 (5%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G N  TLFP D LQE +N+Q+R+VN+I + N K  + I  T+ Q V
Sbjct: 776  FVLVRPVVTYEITDGINFETLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLV 835

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW Q++K    E+A AS VE+R N LIR FLRI LVKS ISY  KR D +  G 
Sbjct: 836  RTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGL 895

Query: 350  TPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRI 511
               N  D  N N F     YSKAKI +SL+Q Q  I TLLNRNKE QSL+ILS++NCSR+
Sbjct: 896  LSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTLLNRNKECQSLIILSSANCSRM 955

Query: 512  GLFK-NSKHPNAIKEWNPXIPILXIXGPL 595
            G  K +S   ++IK+ +P IPI    GPL
Sbjct: 956  GTLKYHSVIKDSIKK-DPLIPIRNSLGPL 983
to top
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1361

 Score =  181 bits (460), Expect = 1e-45
 Identities = 104/208 (50%), Positives = 135/208 (64%), Gaps = 10/208 (4%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NLATLFPQDLLQE +N+Q+R+VN+I + N K+T+ I  T+ Q V
Sbjct: 766  FVLVRPVVPYEITDGINLATLFPQDLLQERDNVQLRVVNYILYGNGKVTRGISDTSIQLV 825

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW Q++K    E+A  S VEVR N +I+DFL++ LVK  ISY  KR D +S   
Sbjct: 826  RTCLVLNWNQDKKGSSIEEARGSFVEVRTNGMIQDFLKVNLVKPAISYISKRNDPSS--- 882

Query: 350  TPHNRLDRANSNSFYS-----KAKIE-SLSQHQEAIGTLLNRNKEYQSLMILSASNCSRI 511
                  D  N N FYS     K K++ S +Q+Q  + TLL  NKE Q  +ILS+SNC RI
Sbjct: 883  EKKEGSDHTNMNPFYSIYIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFRI 942

Query: 512  GLFKNSKHPNAIKEWNPXIPILXIXGPL 595
            G FK  K+P  + + +P IPI    GPL
Sbjct: 943  GPFKGVKYPKELIKKDPLIPIRNSFGPL 970
to top
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1394

 Score =  180 bits (457), Expect = 2e-45
 Identities = 103/206 (50%), Positives = 136/206 (66%), Gaps = 8/206 (3%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP + YE+ +G NL  LFPQDLLQE +NL++R+ N+I + N K  + I  T+ Q V
Sbjct: 778  FVFVRPVIIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLV 837

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCL++NW++++K    E A AS VEV  N L+R+FLRI+L KS  +Y RKR D +  G 
Sbjct: 838  RTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGL 897

Query: 350  TPHNRLDRANSNSF---YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGL 517
              +N  DR N N F   YSK ++ +S SQ+Q  I TLLNRNKE QSL+ILSASNC +I L
Sbjct: 898  IFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDL 957

Query: 518  FKNSKHPNAIKEWNPXIPILXIXGPL 595
            F + K  N IKE +   P++ I   L
Sbjct: 958  FNDVKDYNVIKESSKKDPLISIRNSL 983
to top
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1332

 Score =  176 bits (447), Expect = 3e-44
 Identities = 105/211 (49%), Positives = 134/211 (63%), Gaps = 13/211 (6%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP + Y++ +  NL  LFPQDL +E +NL+++++NFI + N K  + I  T+ Q V
Sbjct: 748  FVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLV 807

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW ++EK    E+A AS VEV  N LIR FLRI+LVKS ISY RKR D +S G 
Sbjct: 808  RTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGL 867

Query: 350  TPHNRLDRANSNSFYSKAK---IESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLF 520
              +N  DR N N F+S  K    +SLSQ    I  LLNRNKE +S +ILS+SNC ++G F
Sbjct: 868  ISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPF 927

Query: 521  KNSKHPNAIKE------WNPXIPILXIXGPL 595
             N K+ N IKE       N  IPI    GPL
Sbjct: 928  NNVKYHNGIKEEINQFKRNHKIPIKISLGPL 958
to top
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1386

 Score =  168 bits (426), Expect = 9e-42
 Identities = 98/189 (51%), Positives = 123/189 (65%), Gaps = 5/189 (2%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV  RP V YE+ +G NLA LFP DL QE++N+Q+++VN+I + N K  + I  T+ Q V
Sbjct: 774  FVLFRPVVTYEIADGLNLARLFPPDLCQEKDNMQLQIVNYIVYGNGKPIREISDTSIQLV 833

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RT  ++NW+Q++K    E A AS VEVRA  LIRDFLRI+LVKS I   RKR D +  G 
Sbjct: 834  RTWFILNWDQDKKSASAEAAHASFVEVRAKGLIRDFLRIDLVKSPILDPRKRNDPSGSGL 893

Query: 350  TPHNRLDRANSNSFYSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKN 526
               N  D  N N FYSK K+ +S  Q+   I TLLN+NKE  SLMILSASN  R+G F +
Sbjct: 894  ISDNVSDHTNINPFYSKPKMKQSPRQNHGTIRTLLNQNKECPSLMILSASNWFRMGPFND 953

Query: 527  SKHPNAIKE 553
             K  N IKE
Sbjct: 954  VKSQNVIKE 962
to top
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit) (Fragment)
          Length = 1163

 Score =  160 bits (404), Expect = 3e-39
 Identities = 95/197 (48%), Positives = 125/197 (63%), Gaps = 6/197 (3%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP + YE+ +  N   LFPQDL QE++NL++++VN+I + N K  + I  T  Q V
Sbjct: 568  FVLVRPVILYEIPDSNNFVKLFPQDLFQEKDNLELKVVNYILYGNGKSIRGISDTRIQLV 627

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV NW+  +     E+A AS +EVR N LI  FLRI+LVKS  SY RKR + +  G 
Sbjct: 628  RTCLVFNWDDGKNSSSIEEAPASFIEVRTNGLIEYFLRIDLVKSNTSYIRKRNEPSGFGL 687

Query: 350  TPHNRLDRANS-NSFYSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFK 523
               N+ DR N   S +SK KI +SLSQ+   I  LLNRNKE +S +ILS+SNC ++  F 
Sbjct: 688  IGDNKSDRINPFFSIHSKGKIQQSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQMRPFN 747

Query: 524  NSKHPNAIKEWNPXIPI 574
            N K  N IK+ +P I I
Sbjct: 748  NEKSHNGIKK-DPIISI 763
to top
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1376

 Score =  157 bits (398), Expect = 2e-38
 Identities = 94/202 (46%), Positives = 123/202 (60%), Gaps = 4/202 (1%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP   YE+ +  NLATLFPQDL +E++N+Q+R+ N+I + N K T+ I  T+ Q V
Sbjct: 774  FVLVRPVATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLV 833

Query: 182  RTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPH 358
            RTCLV+NW++    E+  A  VEV    LI+DF+RI LVKS ISY RKR +    G    
Sbjct: 834  RTCLVLNWDKNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISA 893

Query: 359  NRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSKHP 538
            + ++   S S  S    +SL Q+   I   LNRNKE QSL+ILS+SNC R+G F + KH 
Sbjct: 894  DHMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKHH 953

Query: 539  NAIKE---WNPXIPILXIXGPL 595
            N I +    N  I I    GPL
Sbjct: 954  NVINQSIKKNTLITIKNSSGPL 975
to top
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1386

 Score =  156 bits (395), Expect = 4e-38
 Identities = 95/212 (44%), Positives = 130/212 (61%), Gaps = 14/212 (6%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP + YE+ +  NL  LFPQD+ QE +NL+++++N+I   N K  + I  T+ Q V
Sbjct: 774  FVLVRPVILYEIADRINLVKLFPQDMFQERDNLELKVINYILSGNGKSIRGISDTSIQLV 833

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW+Q++K    E A AS VE+    L+R FLRI+LVKS ISY RKR +      
Sbjct: 834  RTCLVLNWDQDKKFSSIENAHASFVEISIKGLVRYFLRIDLVKSHISYIRKRNNPPGSRF 893

Query: 350  TPHNRLDRANSNSFY---SKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGL 517
               N  DR   N F+   S+ KI +SLS++   I  LLNRN++ +SL+ILS+SNC +I  
Sbjct: 894  ILDNESDRTTINPFFSIDSREKIQQSLSKNHGTIRMLLNRNEKCRSLIILSSSNCFQIRS 953

Query: 518  FKNSKHPNAIKEW------NPXIPILXIXGPL 595
            F + K+ N IKE       +  IPI    GPL
Sbjct: 954  FNHGKYYNGIKEGINQIQRDAMIPIKNSLGPL 985
to top
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1373

 Score =  151 bits (381), Expect = 2e-36
 Identities = 93/208 (44%), Positives = 128/208 (61%), Gaps = 10/208 (4%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP V YE+ +G NLATL PQDLLQE  N+Q+R+ N+I + N K+T+ IY T+ Q V
Sbjct: 768  FVLVRPVVTYEITDGINLATLLPQDLLQERGNVQLRVFNYILYGNGKVTRGIYDTSIQLV 827

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW Q++K    E+A AS VEVR N +IR FL+I L+   +SY  K   R +   
Sbjct: 828  RTCLVLNWNQDKKDSSIEEARASFVEVRTNGIIRYFLKIGLMNRALSYIGK---RNNPPL 884

Query: 350  TPHNRLDRANSNSF---YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGL 517
               + L+  N N F   YSK K+ ++ + +Q  +  L+ +NKE QS +ILS+SNC R+G 
Sbjct: 885  FSDDGLEYTNMNPFFSIYSKPKLQQAFNPNQGTVRMLVGKNKECQSFIILSSSNCFRMGP 944

Query: 518  F--KNSKHPNAIKEWNPXIPILXIXGPL 595
            F     K+P    + +  I I    GPL
Sbjct: 945  FTLNGVKYPKESIKKDRLILIKNSFGPL 972
to top
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1384

 Score =  144 bits (364), Expect = 1e-34
 Identities = 90/193 (46%), Positives = 120/193 (62%), Gaps = 9/193 (4%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV VRP   YE+ +  NLATLFP+DL +E++N+Q+R+ N+I + N K T+ I  T+ Q V
Sbjct: 779  FVLVRPVATYEIADSINLATLFPKDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLV 838

Query: 182  RTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            RTCLV+NW+Q+ K    E+  A  VEV    LIRDF+RI LVKS ISY RKR + +S   
Sbjct: 839  RTCLVLNWDQDNKNSSLEEVRAFFVEVNTKGLIRDFIRIGLVKSHISYIRKRNNPSSEKK 898

Query: 350  TPHNRLDRANSNSFYS---KAKI--ESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIG 514
               +     + N FYS   KA I  +SL Q+   I   LNRN+    L+ILS+SNC RIG
Sbjct: 899  EGSDH----SMNPFYSISPKAGILHQSLRQNHGTIRMFLNRNRN-PILLILSSSNCFRIG 953

Query: 515  LFKNSKHPNAIKE 553
             F + K+ N I +
Sbjct: 954  PFNHVKYHNVINQ 966
to top
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1209

 Score =  101 bits (251), Expect = 2e-21
 Identities = 61/172 (35%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
 Frame = +2

Query: 23   VAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFVRTCLVVN 202
            V + + +G N+ T F  DL +E +NLQI++ N I +E+ +  Q +  T+   VRTCL  +
Sbjct: 627  VEHGIPDGPNMTTPFSLDLSREGDNLQIQISNSILYEDGERIQVMSDTSIPLVRTCLGFD 686

Query: 203  WEQEE--KEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPHNRLDRA 376
            WEQ +  + +A  SL+ VR N ++ + ++I L+K    +  +R ++ S     HN LD  
Sbjct: 687  WEQIDSIESEAYVSLISVRTNKIVNNMVQISLMKYPPFFMGRRDNKASSNLMFHNNLD-- 744

Query: 377  NSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSK 532
            ++N F S    + +S+HQ  I +L N  ++  S M+LS S+C RI LF +SK
Sbjct: 745  HTNLFSSNGASQLISKHQGTICSLSNGEEDSGSFMVLSPSDCFRIVLFNDSK 796
to top
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1224

 Score = 89.7 bits (221), Expect = 6e-18
 Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
 Frame = +2

Query: 23   VAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFVRTCLVVN 202
            V + + +G N+ T F  DL +E +NLQI++   I +E+ +  Q +   +   VRTC+  +
Sbjct: 629  VEHGIPDGSNMTTPFSLDLSREGDNLQIQISYSISYEDGERIQVMSDISIPLVRTCIGFD 688

Query: 203  WEQEE--KEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPHNRLDRA 376
            WEQ +  + +A  SL+ VR N ++ + ++I L+K    +  +R ++TS     HN LD  
Sbjct: 689  WEQIDSIESEAYVSLISVRTNKIVNNMVQISLMKYPPFFMGRRDNKTSPNLMFHNNLDHT 748

Query: 377  NSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSK 532
            N  S  S    + +S+HQ  I +L N  ++  S M+LS S+  RI LF +SK
Sbjct: 749  NLLS--SNGASQLISKHQGIICSLSNGEEDSGSFMVLSPSDYFRIVLFNDSK 798
to top
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1386

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 54/184 (29%), Positives = 104/184 (56%), Gaps = 1/184 (0%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV +RP V Y++ +  N +TLF  DLL++   ++I+ +N++ +E+ +  Q I   N Q +
Sbjct: 755  FVLIRPAVEYKISKKLNKSTLF--DLLKKNKKVEIKTINYLLYEDDEQIQIINEKNIQLI 812

Query: 182  RTCLVVNWEQEE-KEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPH 358
            +TCL+V+W+++   ++A  S ++++  +  + FL+I L++   S   K+ ++T       
Sbjct: 813  QTCLLVHWKKKYFFKEANVSFLKIKTKNNFKTFLQISLIE--YSNLEKKKEKT----ISK 866

Query: 359  NRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSKHP 538
            N L +   + F+S +K E  ++ Q  I  + N+N   QS +ILS+S+  +   FK     
Sbjct: 867  NVLKKNYYDHFFSISKNELKNKKQGVIRIISNQNNGMQSFIILSSSDLVKTFKFKKLTKN 926

Query: 539  NAIK 550
             +IK
Sbjct: 927  ISIK 930
to top
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1330

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 53/183 (28%), Positives = 95/183 (51%), Gaps = 6/183 (3%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATL---FPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNS 172
            F  +RP + Y++    N  TL   F  DLL+E+  ++I+ V +I +E+S+  +    T+ 
Sbjct: 719  FFLIRPAIEYKIIFNDNPLTLPIPFYLDLLKEQKKIKIQTVKYILYEDSEEVEINPDTDI 778

Query: 173  QFVRTCLVVNWEQEE-KEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGP 349
            Q ++TCL++NWE +   ++A  S +++R N +I++F +I L+++     +K+ +      
Sbjct: 779  QLIQTCLILNWETKVFIKEAHISFIKIRINKIIKNFFQINLIENINLMNKKKNNNII--- 835

Query: 350  TPHNRLDRANSNSFYSK--AKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFK 523
               N L +        K   KI  LS+    I T  N+N+E    +ILS  N  +  LF 
Sbjct: 836  --LNYLFKKKRYIINQKDCEKILLLSKTWGIIRTPSNKNQEKSFFLILSPFNLFQTILFD 893

Query: 524  NSK 532
             +K
Sbjct: 894  KTK 896
to top
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1445

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 1/178 (0%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            F+ +RP + + + E  +LA  F  +  +++  L+++ + ++ +E+ +  +    T  Q +
Sbjct: 771  FIFIRPAIEFIVPEETDLAETFTLNSQKKQEILKVKKIRYLLYEDGEEVEVTNKTGIQLI 830

Query: 182  RTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSGGPTPH 358
            +T LV++W+++   +K  ASL E+  N L + FL+I L++  I    K+ +  +      
Sbjct: 831  QTGLVLDWKEDSSIKKVYASLTEIETNGLSKKFLQISLIEHPIFEIEKKKNNVNLKYLFT 890

Query: 359  NRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMILSASNCSRIGLFKNSK 532
            N ++ ++ +  Y          ++  I    N N+E +SL ILS  +  +I L KNS+
Sbjct: 891  NEINYSSHSFNYENGLFNG---YRGIIRISSNENQEDKSLPILSPFDFVQIFLSKNSE 945
to top
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1408

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            F   RP + Y + +G     L   +LL+E+N L+++ ++++ +E+ +  Q   + + Q V
Sbjct: 767  FALARPVIEYFVRKGSYPPIL---NLLKEQNTLRVKFLDYMLYEDGEEIQIKNNMSIQLV 823

Query: 182  RTCLVVNWEQEEKEKAG-ASLVEVRANDLIRDFLRIELVKSTISYTR-KRYDRTSGGPTP 355
            +TCL+++WE++   KA   S++E+R N +I+ FL+I L+ S   Y +  ++ R       
Sbjct: 824  QTCLLLDWEKKSPIKAAKTSILELRINKIIKTFLQISLLNSFDFYVKGSKFKRFFN---- 879

Query: 356  HNRLDRANSNSFYSKAKIESLS-----QHQEAIGTLLNRNKEYQSLMILSASNCSRIGLF 520
                   N  SF + +  ++L      +HQ  I ++ NR     S ++LS S+  +  L 
Sbjct: 880  -------NKKSFVADSIPKTLESQLSIKHQGTIRSVSNRK---TSFLVLSPSDSFQNSLS 929

Query: 521  KNSKH 535
             N ++
Sbjct: 930  TNFQY 934
to top
>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1420

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
 Frame = +2

Query: 2    FVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFV 181
            FV + P   Y +            D  + +   + + ++FI  +N +  + I    +Q V
Sbjct: 766  FVLMTPVSEYNLSSDSLAQVASRFDKPKTQRRAKAKTLSFICCKNGEKIEVINDVPTQLV 825

Query: 182  RTCLVVNW-----EQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYD---RT 337
            R CL++ W     E   +++   SL+ V+ + L + FL++  + S  +    R D   RT
Sbjct: 826  RLCLIIEWQKYLHETLPRKRNYFSLISVKISYLFKTFLQVNPMVSPPTQRGVRVDEIFRT 885

Query: 338  S---GGPTPHNRLDRANS 382
            S   G P+P  +LD ANS
Sbjct: 886  STPLGKPSP-PQLDLANS 902
to top
>HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2 (Cytadherence|
           accessory protein 2)
          Length = 1818

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 22/159 (13%)
 Frame = +2

Query: 71  QDLLQEENNLQIRLVNFIYHENSKLTQR------------IYHTNSQFVRTCLVVNWEQE 214
           Q+L+ EE+ L++RL +  ++ NS+L +             +    +Q V+  L    +++
Sbjct: 274 QELVDEESTLKVRLNDADFYINSRLAELDDLTSKINERDFVSKEQAQDVKASLANLTKEK 333

Query: 215 EKEKAGASLVEVRANDLIRDFLRIE---------LVKSTISYTRKRYDRTSGGPTPHNRL 367
           E+  A     E   N  + D  R+E         L +    + RK+ +      T H +L
Sbjct: 334 ERLSAEKDSFERLRNTALNDINRMEQENALFAKHLEQQQYEFERKQQESLLKLETEHKQL 393

Query: 368 D-RANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLM 481
             R       S+AK E+L   +     LL + +E   L+
Sbjct: 394 QKRIGEFKIESEAKSEALLIQER---ELLEKRREIDDLL 429
to top
>RAD59_ASHGO (Q757G7) DNA repair protein RAD59|
          Length = 204

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
 Frame = +2

Query: 104 IRLVNFIYHENSKLTQRIYHTN-------SQFVRTCLVVNWEQEEKEKAGAS-------L 241
           +R +  + H+  + T +IYH N       SQ + T +++ +  E     G S       +
Sbjct: 41  VRRIGALQHKIEQYTFKIYHVNRYGKHSLSQVIPTHVLIQFANEAFGYNGWSSAVEEVLI 100

Query: 242 VEVRANDLIRDFLRIELVKSTISYTRK--RYDRTSGGPTPHNRLDRANSNSFYSKAKIES 415
            +V+  + +RD   IEL   T     K    D T+   T  +++   +    Y KAK E+
Sbjct: 101 TDVKQRERVRDGAAIELYTVTAEARVKLTLQDGTNTEATGLSKITLPSKGDAYGKAKKEA 160
to top
>MYO5B_RAT (P70569) Myosin-5B (Myosin Vb) (Myosin heavy chain myr 6)|
          Length = 1846

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
 Frame = +2

Query: 71   QDLLQEENNLQIRLVNFIYHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEV 250
            +D    EN    + V  + HEN+ L     H N Q +R           + KA +S   V
Sbjct: 1005 EDAHNRENGELRKRVADLEHENALLKDEKEHLNHQILR-----------QSKAESSQSSV 1053

Query: 251  RANDLIRDFLRIE------LVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIE 412
              N LI+  L  E      LVK      ++  +      TP +R + +N +S  S +   
Sbjct: 1054 EENLLIKKELEEERSRYQNLVKEYSQLEQRYENLRDEQQTPGHRKNPSNQSSLESDSNYP 1113

Query: 413  SLS 421
            S+S
Sbjct: 1114 SIS 1116
to top
>APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [Contains:|
            Apolipoprotein B-48 (Apo B-48)]
          Length = 4563

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +2

Query: 122  IYHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKS 301
            ++ E +K T  +Y  + Q  +  L++NW QE    A  + ++ +  + + D  R  + + 
Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED-TRDRMYQM 2526

Query: 302  TISYTRKRY 328
             I    +RY
Sbjct: 2527 DIQQELQRY 2535
to top
>YBA4_YEAST (P35194) Hypothetical 287.5 kDa protein in PDR3-HTA2 intergenic|
           region
          Length = 2493

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
 Frame = +2

Query: 86  EENNLQIRLVNF---IYHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRA 256
           +E NL  +   F   I H+   L Q +YH    F      +N+  E   +    L+    
Sbjct: 55  KEINLSAKFTEFAAEIEHDVQTLPQILYHDKKIFNSLVSFINFHDEFSLQPLLDLLAQFC 114

Query: 257 NDLIRDFLRI--ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQ 430
           +DL  DFL+   E +K+ I+      +  S           A    + SK  ++ L    
Sbjct: 115 HDLGPDFLKFYEEAIKTLINLLDAAIEFESSNVFEWGFNCLAYIFKYLSKFLVKKLVLTC 174

Query: 431 EAIGTLLNRNKEYQS 475
           + +  LL+ +KEY S
Sbjct: 175 DLLIPLLSHSKEYLS 189
to top
>AMYG_DEBOC (P22861) Glucoamylase 1 precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 958

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 507 REQLDADKIIKDWYSLFRFNKV 442
           R+  D DK+IKDWY L  F+ +
Sbjct: 446 RKHSDMDKVIKDWYELTPFDGI 467


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,218,610
Number of Sequences: 219361
Number of extensions: 1472508
Number of successful extensions: 3688
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3639
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top