ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdi01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 1102 bits (556), Expect = 0.0 Identities = 585/596 (98%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16740 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 16799 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16800 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 16859 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16860 tatttctcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 16919 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16920 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 16979 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16980 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 17039 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 17040 cactatttcgtatacacgaaaaaggtatgataggacaagtgcaggaccgattccccataa 17099 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 17100 taggttagatcgcgccaatatcaattctttttattccaaggcgaagattgaatcacttag 17159 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 17160 ccaacatccagaagctattggcactttgttgaatcgaaataaagaataccactctttgat 17219 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 17220 gattttgtcggcatccaactgttctcgaattggtttattcaagaattcaaaacatcccaa 17279 Query: 541 tgcgataaaagaatggaatcctanaattcctattctanaaattnttgggcccttag 596 ||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| Sbjct: 17280 tgcgataaaagaatggaatcctagaattcctattcgagaaatttttgggcccttag 17335
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 1102 bits (556), Expect = 0.0 Identities = 585/596 (98%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28094 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 28153 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28154 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 28213 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28214 tatttctcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 28273 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28274 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 28333 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28334 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 28393 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 28394 cactatttcgtatacacgaaaaaggtatgataggacaagtgcaggaccgattccccataa 28453 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 28454 taggttagatcgcgccaatatcaattctttttattccaaggcgaagattgaatcacttag 28513 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 28514 ccaacatccagaagctattggcactttgttgaatcgaaataaagaataccactctttgat 28573 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 28574 gattttgtcggcatccaactgttctcgaattggtttattcaagaattcaaaacatcccaa 28633 Query: 541 tgcgataaaagaatggaatcctanaattcctattctanaaattnttgggcccttag 596 ||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| Sbjct: 28634 tgcgataaaagaatggaatcctagaattcctattcgagaaatttttgggcccttag 28689
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 801 bits (404), Expect = 0.0 Identities = 547/596 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 ||||||||| ||||| ||| |||| |||||||||||||||||||| |||||||||||||| Sbjct: 91849 ttttgtttcggttcgacctgcagtcgcatatgaaatggacgaagggagaaatttagcaac 91908 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct: 91909 acttttcccgcaggatctcctgcaagaagaggataatctccaacttcgacttgtcaattt 91968 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 91969 tatttctcatgaaaatagcaagttaactcaaagaatttatcacacgaatagtcaattcgt 92028 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||||||||||||||||||||||||||||| |||| ||||||| || Sbjct: 92029 tcgaacttgcttagtagtgaattgggaacaagaagaaaaagagggggctcgtgcttctct 92088 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 92089 tgttgaggtaagaacaaacgatctaattcgcgatttcctaagaattgagttagtcaagtc 92148 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||| |||||||||||||||||||| ||||| || |||| |||| Sbjct: 92149 tactatttcgtatacacgaagaaggtatgataggacaagtgtaggactgattcccaataa 92208 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 92209 taggttagatcgcaacaataccaattccttttattccaaggcgaagattcaatcacttag 92268 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 |||||||||||||| |||||| || ||||||||||||||||||||||| | ||||||||| Sbjct: 92269 ccaacatcaagaagttattggtaccttgttgaatcgaaataaagaatatccatctttgat 92328 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||| Sbjct: 92329 gattttgttggcatccaactgttctcgaattggtttattcaagaattcgaaatatcccaa 92388 Query: 541 tgcgataaaagaatggaatcctanaattcctattctanaaattnttgggcccttag 596 |||| ||||||||| |||||||| ||||||||||| | | ||| |||||| ||||| Sbjct: 92389 tgcggtaaaagaatcgaatcctagaattcctattcgagatatttttgggctcttag 92444
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 801 bits (404), Expect = 0.0 Identities = 547/596 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 ||||||||| ||||| ||| |||| |||||||||||||||||||| |||||||||||||| Sbjct: 30222 ttttgtttcggttcgacctgcagtcgcatatgaaatggacgaagggagaaatttagcaac 30281 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct: 30282 acttttcccgcaggatctcctgcaagaagaggataatctccaacttcgacttgtcaattt 30341 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 30342 tatttctcatgaaaatagcaagttaactcaaagaatttatcacacgaatagtcaattcgt 30401 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||||||||||||||||||||||||||||| |||| ||||||| || Sbjct: 30402 tcgaacttgcttagtagtgaattgggaacaagaagaaaaagagggggctcgtgcttctct 30461 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 30462 tgttgaggtaagaacaaacgatctaattcgcgatttcctaagaattgagttagtcaagtc 30521 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||| |||||||||||||||||||| ||||| || |||| |||| Sbjct: 30522 tactatttcgtatacacgaagaaggtatgataggacaagtgtaggactgattcccaataa 30581 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 30582 taggttagatcgcaacaataccaattccttttattccaaggcgaagattcaatcacttag 30641 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 |||||||||||||| |||||| || ||||||||||||||||||||||| | ||||||||| Sbjct: 30642 ccaacatcaagaagttattggtaccttgttgaatcgaaataaagaatatccatctttgat 30701 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||| Sbjct: 30702 gattttgttggcatccaactgttctcgaattggtttattcaagaattcgaaatatcccaa 30761 Query: 541 tgcgataaaagaatggaatcctanaattcctattctanaaattnttgggcccttag 596 |||| ||||||||| |||||||| ||||||||||| | | ||| |||||| ||||| Sbjct: 30762 tgcggtaaaagaatcgaatcctagaattcctattcgagatatttttgggctcttag 30817
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 777 bits (392), Expect = 0.0 Identities = 544/596 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 ||||||||| ||||| ||| |||| |||||||||||||||||||| | |||||||||||| Sbjct: 29748 ttttgtttcggttcgacctgcagtcgcatatgaaatggacgaagggataaatttagcaac 29807 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct: 29808 acttttcccgcaggatctcctgcaagaagaggataatctccaacttcgacttgtcaattt 29867 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 29868 tatttctcatgaaaatagcaagttaactcaaagaatttatcacacgaatagtcaattcgt 29927 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||||||||||||||||||||||||||||| ||| ||||||| || Sbjct: 29928 tcgaacttgcttagtagtgaattgggaacaagaagaaaaagagggagctcgtgcttctct 29987 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 29988 tgttgaggtaaaaacaaatgatctaattcgcgatttcctaagaattgagttagtcaagtc 30047 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||| ||||||||||| |||||||||||||||||||| |||| || |||| |||| Sbjct: 30048 tactattttgtatacacgaagaaggtatgataggacaagtgtaggattgattcccaataa 30107 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 30108 taggttagatcgcaacaataccaattccttttattccaaggcgaagattcaatcacttag 30167 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 |||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 30168 ccaacatcaagaagttattggcaccttgttgaatcgaaataaagaatatccatctttgat 30227 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||| Sbjct: 30228 gattttgttggcatccaactgttctcgaattggtttattcaagaattctaaatatcccaa 30287 Query: 541 tgcgataaaagaatggaatcctanaattcctattctanaaattnttgggcccttag 596 |||| ||||||||| |||||||| ||||||||||| | | ||| |||||| ||||| Sbjct: 30288 tgcggtaaaagaatcgaatcctagaattcctattcgagatatttttgggctcttag 30343
>emb|X17318.1|CLZMRPB Zea mays chloroplast trnC gene, rpoB gene, rpoC1 gene, rpoC2 gene and rps2 gene for transfer RNA-Cys, RNA polymerase subunits beta, beta-1, beta-2 and ribosomal protein S2 respectively Length = 12503 Score = 777 bits (392), Expect = 0.0 Identities = 544/596 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 ||||||||| ||||| ||| |||| |||||||||||||||||||| | |||||||||||| Sbjct: 9662 ttttgtttcggttcgacctgcagtcgcatatgaaatggacgaagggataaatttagcaac 9721 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct: 9722 acttttcccgcaggatctcctgcaagaagaggataatctccaacttcgacttgtcaattt 9781 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 9782 tatttctcatgaaaatagcaagttaactcaaagaatttatcacacgaatagtcaattcgt 9841 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||||||||||||||||||||||||||||| ||| ||||||| || Sbjct: 9842 tcgaacttgcttagtagtgaattgggaacaagaagaaaaagagggagctcgtgcttctct 9901 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 9902 tgttgaggtaaaaacaaatgatctaattcgcgatttcctaagaattgagttagtcaagtc 9961 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||| ||||||||||| |||||||||||||||||||| |||| || |||| |||| Sbjct: 9962 tactattttgtatacacgaagaaggtatgataggacaagtgtaggattgattcccaataa 10021 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 10022 taggttagatcgcaacaataccaattccttttattccaaggcgaagattcaatcacttag 10081 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 |||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 10082 ccaacatcaagaagttattggcaccttgttgaatcgaaataaagaatatccatctttgat 10141 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||| Sbjct: 10142 gattttgttggcatccaactgttctcgaattggtttattcaagaattctaaatatcccaa 10201 Query: 541 tgcgataaaagaatggaatcctanaattcctattctanaaattnttgggcccttag 596 |||| ||||||||| |||||||| ||||||||||| | | ||| |||||| ||||| Sbjct: 10202 tgcggtaaaagaatcgaatcctagaattcctattcgagatatttttgggctcttag 10257
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 777 bits (392), Expect = 0.0 Identities = 544/596 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 ||||||||| ||||| ||| |||| |||||||||||||||||||| | |||||||||||| Sbjct: 29747 ttttgtttcggttcgacctgcagtcgcatatgaaatggacgaagggataaatttagcaac 29806 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct: 29807 acttttcccgcaggatctcctgcaagaagaggataatctccaacttcgacttgtcaattt 29866 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 29867 tatttctcatgaaaatagcaagttaactcaaagaatttatcacacgaatagtcaattcgt 29926 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||||||||||||||||||||||||||||| ||| ||||||| || Sbjct: 29927 tcgaacttgcttagtagtgaattgggaacaagaagaaaaagagggagctcgtgcttctct 29986 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 29987 tgttgaggtaaaaacaaatgatctaattcgcgatttcctaagaattgagttagtcaagtc 30046 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||| ||||||||||| |||||||||||||||||||| |||| || |||| |||| Sbjct: 30047 tactattttgtatacacgaagaaggtatgataggacaagtgtaggattgattcccaataa 30106 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 30107 taggttagatcgcaacaataccaattccttttattccaaggcgaagattcaatcacttag 30166 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 |||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 30167 ccaacatcaagaagttattggcaccttgttgaatcgaaataaagaatatccatctttgat 30226 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||| Sbjct: 30227 gattttgttggcatccaactgttctcgaattggtttattcaagaattctaaatatcccaa 30286 Query: 541 tgcgataaaagaatggaatcctanaattcctattctanaaattnttgggcccttag 596 |||| ||||||||| |||||||| ||||||||||| | | ||| |||||| ||||| Sbjct: 30287 tgcggtaaaagaatcgaatcctagaattcctattcgagatatttttgggctcttag 30342
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 749 bits (378), Expect = 0.0 Identities = 536/590 (90%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 27369 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 27428 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 27429 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 27488 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 27489 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 27548 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 27549 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 27608 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 27609 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 27668 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 27669 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 27728 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 27729 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 27788 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 27789 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 27848 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 27849 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 27908 Query: 541 tgcgataaaagaatggaatcctanaattcctattctanaaattnttgggc 590 || | ||||||||| |||||||| ||||||||||| | || || |||||| Sbjct: 27909 tggggtaaaagaatcgaatcctagaattcctattccaaaattttttgggc 27958
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 747 bits (377), Expect = 0.0 Identities = 525/575 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 27437 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 27496 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 27497 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 27556 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 27557 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 27616 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 27617 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 27676 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 27677 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 27736 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 27737 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 27796 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 27797 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 27856 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 27857 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 27916 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 27917 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 27976 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 27977 tggggtaaaagaatcgaatcctagaattcctattc 28011
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 747 bits (377), Expect = 0.0 Identities = 525/575 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 27437 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 27496 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 27497 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 27556 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 27557 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 27616 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 27617 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 27676 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 27677 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 27736 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 27737 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 27796 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 27797 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 27856 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 27857 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 27916 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 27917 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 27976 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 27977 tggggtaaaagaatcgaatcctagaattcctattc 28011
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 747 bits (377), Expect = 0.0 Identities = 525/575 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 27395 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 27454 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 27455 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 27514 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 27515 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 27574 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 27575 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 27634 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 27635 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 27694 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 27695 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 27754 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 27755 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 27814 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 27815 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 27874 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 27875 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 27934 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 27935 tggggtaaaagaatcgaatcctagaattcctattc 27969
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 747 bits (377), Expect = 0.0 Identities = 525/575 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 110808 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 110867 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 110868 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 110927 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 110928 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 110987 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 110988 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 111047 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 111048 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 111107 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 111108 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 111167 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 111168 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 111227 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 111228 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 111287 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 111288 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 111347 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 111348 tggggtaaaagaatcgaatcctagaattcctattc 111382
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 747 bits (377), Expect = 0.0 Identities = 525/575 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 9256687 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 9256746 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 9256747 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 9256806 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 9256807 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 9256866 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 9256867 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 9256926 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 9256927 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 9256986 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 9256987 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 9257046 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 9257047 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 9257106 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 9257107 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 9257166 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 9257167 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 9257226 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 9257227 tggggtaaaagaatcgaatcctagaattcctattc 9257261 Score = 747 bits (377), Expect = 0.0 Identities = 525/575 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 9152782 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 9152841 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 9152842 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 9152901 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 9152902 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 9152961 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 9152962 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 9153021 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 9153022 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 9153081 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 9153082 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 9153141 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 9153142 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 9153201 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 9153202 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 9153261 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 9153262 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 9153321 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 9153322 tggggtaaaagaatcgaatcctagaattcctattc 9153356
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 747 bits (377), Expect = 0.0 Identities = 525/575 (91%) Strand = Plus / Minus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 14359576 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 14359517 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 14359516 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 14359457 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 14359456 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 14359397 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 14359396 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 14359337 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 14359336 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 14359277 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 14359276 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 14359217 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 14359216 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 14359157 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 14359156 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 14359097 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 14359096 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 14359037 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 14359036 tggggtaaaagaatcgaatcctagaattcctattc 14359002 Score = 739 bits (373), Expect = 0.0 Identities = 524/575 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 14367776 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 14367835 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 14367836 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 14367895 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 14367896 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 14367955 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 14367956 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 14368015 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 14368016 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 14368075 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 |||||||||||||||| |||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 14368076 cactatttcgtatacatgaaaaaggtatgatagcagaagtgcaggactgattctccataa 14368135 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 14368136 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 14368195 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 14368196 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 14368255 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 14368256 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 14368315 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 14368316 tggggtaaaagaatcgaatcctagaattcctattc 14368350
>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0022A24 Length = 148347 Score = 747 bits (377), Expect = 0.0 Identities = 525/575 (91%) Strand = Plus / Minus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 81498 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 81439 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 81438 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 81379 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 81378 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 81319 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 81318 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 81259 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 81258 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 81199 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 81198 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 81139 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 81138 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 81079 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 81078 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 81019 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 81018 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 80959 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 80958 tggggtaaaagaatcgaatcctagaattcctattc 80924 Score = 739 bits (373), Expect = 0.0 Identities = 524/575 (91%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 89698 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 89757 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 89758 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 89817 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 89818 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 89877 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 89878 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 89937 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 89938 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 89997 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 |||||||||||||||| |||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 89998 cactatttcgtatacatgaaaaaggtatgatagcagaagtgcaggactgattctccataa 90057 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 90058 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 90117 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 90118 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 90177 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 90178 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 90237 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 90238 tggggtaaaagaatcgaatcctagaattcctattc 90272
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 731 bits (369), Expect = 0.0 Identities = 523/575 (90%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 27435 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 27494 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| ||||||||||| | ||||| |||||||||| |||||||||||||||| Sbjct: 27495 acttttcccacaggatctcttcgaggaagagggtaatctccaacttcgacttgtcaattt 27554 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 27555 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 27614 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 27615 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 27674 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 27675 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 27734 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || |||||| Sbjct: 27735 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctccataa 27794 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 27795 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 27854 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 27855 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 27914 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 27915 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 27974 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 27975 tggggtaaaagaatcgaatcctagaattcctattc 28009
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 731 bits (369), Expect = 0.0 Identities = 523/575 (90%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 25651 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 25710 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 25711 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 25770 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 25771 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 25830 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 25831 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 25890 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 25891 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 25950 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || | || | Sbjct: 25951 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctctatta 26010 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 26011 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 26070 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 26071 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 26130 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 26131 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 26190 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 26191 tggggtaaaagaatcgaatcctagaattcctattc 26225
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 731 bits (369), Expect = 0.0 Identities = 523/575 (90%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 100584 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 100643 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 100644 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 100703 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 100704 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 100763 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 100764 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 100823 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 100824 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 100883 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || | || | Sbjct: 100884 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctctatta 100943 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 100944 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 101003 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 101004 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 101063 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 101064 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 101123 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 101124 tggggtaaaagaatcgaatcctagaattcctattc 101158
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 731 bits (369), Expect = 0.0 Identities = 523/575 (90%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 10319259 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 10319318 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 10319319 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 10319378 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 10319379 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 10319438 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 10319439 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 10319498 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 10319499 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 10319558 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || | || | Sbjct: 10319559 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctctatta 10319618 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 10319619 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 10319678 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 10319679 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 10319738 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 10319739 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 10319798 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 10319799 tggggtaaaagaatcgaatcctagaattcctattc 10319833
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 731 bits (369), Expect = 0.0 Identities = 523/575 (90%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 |||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||||||||| Sbjct: 10325298 ttttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaac 10325357 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 10325358 acttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattt 10325417 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct: 10325418 tatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgt 10325477 Query: 181 tagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggctggtgcttccct 240 | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 10325478 tcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgtgcttccct 10325537 Query: 241 tgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtc 300 ||||||| |||||||||||| ||| |||||||||||||||||||||| |||| |||| || Sbjct: 10325538 tgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggttaatcaaatc 10325597 Query: 301 cactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgactccccataa 360 ||||||||||||||||||||||||||||||||| | ||||| ||||| || || | || | Sbjct: 10325598 cactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgattctctatta 10325657 Query: 361 taggttagatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttag 420 ||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct: 10325658 taggttagatcgcaccaataccaattccttttattccaaggcgaagattcaatcacttag 10325717 Query: 421 ccaacatcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgat 480 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 10325718 ccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaatctttgat 10325777 Query: 481 gattttgtcggcatccaactgttctcgaattggnttattcaagaattcaaaacatcccaa 540 | ||||||||||||||||||||||||||||||| || || |||||||||||| ||||||| Sbjct: 10325778 ggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaaaatcccaa 10325837 Query: 541 tgcgataaaagaatggaatcctanaattcctattc 575 || | ||||||||| |||||||| ||||||||||| Sbjct: 10325838 tggggtaaaagaatcgaatcctagaattcctattc 10325872
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 716 bits (361), Expect = 0.0 Identities = 485/527 (92%) Strand = Plus / Minus Query: 49 aaatttagcaacacttttcccgcaggatctcttgcaagaagaaaataatctccaaattcg 108 ||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |||| Sbjct: 33550815 aaatttagcaacacttttcccacaggatctcttgcaggaagagggtaatctccaacttcg 33550756 Query: 109 acttgtcaattttatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaa 168 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || Sbjct: 33550755 acttgtcaattttatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaa 33550696 Query: 169 tagtcaatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggc 228 ||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 33550695 tagtcaattcgttcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggc 33550636 Query: 229 tggtgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattga 288 | ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| Sbjct: 33550635 tcgtgcttcccttgttgagataagagcaaatggtctgattcgcgatttcctaagaattgg 33550576 Query: 289 gttagtcaagtccactatttcgtatacacgaaaaaggtatgataggacaagtggaggacc 348 |||| |||| ||||||||||||||||||||||||||||||||||| | ||||| ||||| Sbjct: 33550575 gttaatcaaatccactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggact 33550516 Query: 349 gactccccataataggttagatcgcgccaatagcaattctttttattccaaggcgaagat 408 || || ||||||||||||||||||| |||||| |||||| |||||||||||||||||||| Sbjct: 33550515 gattctccataataggttagatcgcaccaataccaattccttttattccaaggcgaagat 33550456 Query: 409 tgaatcacttagccaacatcaagaagctattggcactttgttgaatcgaaataaagaata 468 | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 33550455 tcaatcacttagccaacatcaagaagctattggtaccttgttgaatcgaaataaagaata 33550396 Query: 469 ccaatctttgatgattttgtcggcatccaactgttctcgaattggnttattcaagaattc 528 ||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||| Sbjct: 33550395 ccaatctttgatggttttgtcggcatccaactgttctcgaattggtttttttaagaattc 33550336 Query: 529 aaaacatcccaatgcgataaaagaatggaatcctanaattcctattc 575 |||| ||||||||| | ||||||||| |||||||| ||||||||||| Sbjct: 33550335 aaaaaatcccaatggggtaaaagaatcgaatcctagaattcctattc 33550289
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 716 bits (361), Expect = 0.0 Identities = 485/527 (92%) Strand = Plus / Minus Query: 49 aaatttagcaacacttttcccgcaggatctcttgcaagaagaaaataatctccaaattcg 108 ||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |||| Sbjct: 96012 aaatttagcaacacttttcccacaggatctcttgcaggaagagggtaatctccaacttcg 95953 Query: 109 acttgtcaattttatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaa 168 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || Sbjct: 95952 acttgtcaattttatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaa 95893 Query: 169 tagtcaatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaagaaaaggc 228 ||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 95892 tagtcaattcgttcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggc 95833 Query: 229 tggtgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattga 288 | ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| Sbjct: 95832 tcgtgcttcccttgttgagataagagcaaatggtctgattcgcgatttcctaagaattgg 95773 Query: 289 gttagtcaagtccactatttcgtatacacgaaaaaggtatgataggacaagtggaggacc 348 |||| |||| ||||||||||||||||||||||||||||||||||| | ||||| ||||| Sbjct: 95772 gttaatcaaatccactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggact 95713 Query: 349 gactccccataataggttagatcgcgccaatagcaattctttttattccaaggcgaagat 408 || || ||||||||||||||||||| |||||| |||||| |||||||||||||||||||| Sbjct: 95712 gattctccataataggttagatcgcaccaataccaattccttttattccaaggcgaagat 95653 Query: 409 tgaatcacttagccaacatcaagaagctattggcactttgttgaatcgaaataaagaata 468 | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 95652 tcaatcacttagccaacatcaagaagctattggtaccttgttgaatcgaaataaagaata 95593 Query: 469 ccaatctttgatgattttgtcggcatccaactgttctcgaattggnttattcaagaattc 528 ||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||| Sbjct: 95592 ccaatctttgatggttttgtcggcatccaactgttctcgaattggtttttttaagaattc 95533 Query: 529 aaaacatcccaatgcgataaaagaatggaatcctanaattcctattc 575 |||| ||||||||| | ||||||||| |||||||| ||||||||||| Sbjct: 95532 aaaaaatcccaatggggtaaaagaatcgaatcctagaattcctattc 95486
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 278 bits (140), Expect = 2e-71 Identities = 190/208 (91%) Strand = Plus / Minus Query: 389 ttttattccaaggcgaagattgaatcacttagccaacatcaagaagctattggcactttg 448 |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||| Sbjct: 101817 ttttattccaaggcaaagattcaatcacttagccaacatcaagaagttattggcaccttg 101758 Query: 449 ttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttctcga 508 |||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||| Sbjct: 101757 ttgaatcgaaataaggaatatccatctttgatgattttgttggcatccaactgttctcga 101698 Query: 509 attggnttattcaagaattcaaaacatcccaatgcgataaaagaatggaatcctanaatt 568 ||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||| |||| Sbjct: 101697 attggtttattcaagaattcaaaatatcccaatgcggtaaaagaatcgaatcctagaatt 101638 Query: 569 cctattctanaaattnttgggcccttag 596 ||||||| | | ||| |||||| ||||| Sbjct: 101637 cctattcgagatatttttgggctcttag 101610
>gb|DQ069545.1| Typha latifolia RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4161 Score = 250 bits (126), Expect = 5e-63 Identities = 243/282 (86%) Strand = Plus / Plus Query: 232 tgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagtt 291 ||||||| ||||| | ||||| ||||||||||| |||||||||||| |||||||||| || Sbjct: 2556 tgcttcctttgttcaagtaagggcaaatgatctgattcgcgatttcataagaattgactt 2615 Query: 292 agtcaagtccactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgac 351 |||||||||||||||||||||||| ||||||||||||||||| ||||| |||| || Sbjct: 2616 agtcaagtccactatttcgtataccggaaaaaggtatgatagggcaagttcaggattgat 2675 Query: 352 tccccataataggttagatcgcgccaatagcaattctttttattccaaggcgaagattga 411 |||| ||||| | ||||||||| |||||| ||| ||||||||||||||| ||||||| | Sbjct: 2676 tcccgataatggattagatcgcaccaatacaaatcctttttattccaaggtgaagattca 2735 Query: 412 atcacttagccaacatcaagaagctattggcactttgttgaatcgaaataaagaatacca 471 ||||||||||||||||| || | || |||| || ||||||||||||| ||| |||| || Sbjct: 2736 atcacttagccaacatcgaggaactgttggtacgttgttgaatcgaactaaggaatgccg 2795 Query: 472 atctttgatgattttgtcggcatccaactgttctcgaattgg 513 ||||||| | |||||||| ||||||| |||||||||||||| Sbjct: 2796 atctttgctaattttgtcatcatccaattgttctcgaattgg 2837 Score = 101 bits (51), Expect = 3e-18 Identities = 168/207 (81%) Strand = Plus / Plus Query: 1 ttttgtttccgttcgccctacagtggcatatgaaatggacgaaggaagaaatttagcaac 60 ||||||||| ||||| ||| ||| |||||||||| | ||| || | |||||||||||| Sbjct: 2316 ttttgtttcggttcgacctgtagtcacatatgaaatagccgatgggataaatttagcaac 2375 Query: 61 acttttcccgcaggatctcttgcaagaagaaaataatctccaaattcgacttgtcaattt 120 ||||||||| |||||||||||||| ||| | |||| ||||| || || ||||||||| Sbjct: 2376 acttttccctcaggatctcttgcaggaaaaggataacgtccaacttagagttgtcaatta 2435 Query: 121 tatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaatagtcaatttgt 180 ||| | ||| |||| |||||| || || | ||||||| ||||||| || |||||| || Sbjct: 2436 tatcctttatggaaatggcaagtcaattcgaggaatttaccacacaagtattcaattagt 2495 Query: 181 tagaacttgcttagtagtgaattggga 207 | | |||||||||||| |||||||||| Sbjct: 2496 tcggacttgcttagtattgaattggga 2522
>gb|DQ069546.1| Yucca schidigera RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4152 Score = 210 bits (106), Expect = 4e-51 Identities = 220/258 (85%) Strand = Plus / Plus Query: 232 tgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagtt 291 ||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct: 2562 tgcttcctttgttgaggtaagggcaaatgatctgattcgcgatttcataagaattgagtt 2621 Query: 292 agtcaagtccactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgac 351 ||||||||| |||||||| ||||| ||||||||||||||| | | || |||| || Sbjct: 2622 agtcaagtctactatttcatatactggaaaaaggtatgatacggcgggttcaggattgat 2681 Query: 352 tccccataataggttagatcgcgccaatagcaattctttttattccaaggcgaagattga 411 |||| ||||| | ||||||||| |||||| |||| ||||||||||||||| ||||||| Sbjct: 2682 tcccgataatggattagatcgcaccaatatcaatcctttttattccaaggggaagattcc 2741 Query: 412 atcacttagccaacatcaagaagctattggcactttgttgaatcgaaataaagaatacca 471 || | ||| ||| ||||||||| || | || || ||||||||||||||||| |||| ||| Sbjct: 2742 attagttacccagcatcaagaaactgtcggtacgttgttgaatcgaaataaggaatgcca 2801 Query: 472 atctttgatgattttgtc 489 ||||||||| |||||||| Sbjct: 2802 atctttgataattttgtc 2819 Score = 69.9 bits (35), Expect = 9e-09 Identities = 137/171 (80%) Strand = Plus / Plus Query: 49 aaatttagcaacacttttcccgcaggatctcttgcaagaagaaaataatctccaaattcg 108 ||||||||| | ||||||||| || ||||| ||||| ||| || | ||| ||||| || | Sbjct: 2370 aaatttagcgaaacttttccctcaagatctattgcaggaaaaagagaatgtccaacttag 2429 Query: 109 acttgtcaattttatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaa 168 | ||||||||| ||| | ||| |||| | |||| || || | |||||| |||||||| Sbjct: 2430 agttgtcaattatatcctttatggaaatggaaagtcaattcgaggaatttctcacacaag 2489 Query: 169 tagtcaatttgttagaacttgcttagtagtgaattgggaacaagaagaaaa 219 || |||||| ||| | |||||||||||| |||||||||| |||||| |||| Sbjct: 2490 tattcaattagttcggacttgcttagtattgaattgggaccaagaaaaaaa 2540
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 135 bits (68), Expect = 2e-28 Identities = 235/291 (80%) Strand = Plus / Minus Query: 232 tgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagtt 291 ||||||| ||||||| ||||| ||||||| || ||||| |||||||||| |||||| || Sbjct: 18677 tgcttcctttgttgaagtaagggcaaatgggctgattcgagatttcctaaaaattgattt 18618 Query: 292 agtcaagtccactatttcgtatacacgaaaaaggtatgataggacaagtggaggaccgac 351 ||| |||||| | |||| ||||| ||||||| |||||| ||||||| |||| | Sbjct: 18617 agtgaagtcccccattttgtatagcggaaaaagaaatgatacgacaagttcaggattcat 18558 Query: 352 tccccataataggttagatcgcgccaatagcaattctttttattccaaggcgaagattga 411 ||| ||||| | | |||||| |||||| |||| ||||||||| |||||||| |||| | Sbjct: 18557 ccccaataatggatcagatcgtaccaatatcaatcctttttatttcaaggcgaggattca 18498 Query: 412 atcacttagccaacatcaagaagctattggcactttgttgaatcgaaataaagaatacca 471 |||||||| ||||||||||| | ||||| | || ||| ||||| ||||||| |||| ||| Sbjct: 18497 atcacttacccaacatcaaggaactattcgtacgttgctgaatagaaataaggaatgcca 18438 Query: 472 atctttgatgattttgtcggcatccaactgttctcgaattggnttattcaa 522 |||||| | |||||||| ||||| | |||||||||||||| | |||||| Sbjct: 18437 atcttttctaattttgtcatcatccgattgttctcgaattggttcattcaa 18387 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 50 aatttagcaacacttttcccgcaggatctcttgca 84 ||||||| |||||||||||| ||||||| |||||| Sbjct: 18868 aatttagaaacacttttcccccaggatcccttgca 18834
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 117 bits (59), Expect = 4e-23 Identities = 143/171 (83%) Strand = Plus / Minus Query: 49 aaatttagcaacacttttcccgcaggatctcttgcaagaagaaaataatctccaaattcg 108 ||||||||||||||||||| | |||||||||||||| ||| | |||||| ||||| |||| Sbjct: 18913 aaatttagcaacacttttctctcaggatctcttgcaggaaaagaataatgtccaacttcg 18854 Query: 109 acttgtcaattttatttatcatgaaaatagcaagttaactcaaagaatttatcacacaaa 168 | ||||||||| ||| | |||||||| |||||| || || | |||||| |||||||| Sbjct: 18853 aattgtcaattatatactttatgaaaatggcaagtcaattcgaggaatttctcacacaag 18794 Query: 169 tagtcaatttgttagaacttgcttagtagtgaattgggaacaagaagaaaa 219 || |||||| ||| || ||||||||||| ||| |||||| |||||| |||| Sbjct: 18793 tattcaattagttcgagcttgcttagtattgacttgggaccaagaaaaaaa 18743 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Minus Query: 387 ctttttattccaaggcgaagattgaatcacttagccaacatcaagaagctattggcactt 446 ||||| ||||||||||||||||| || | || ||||||||| | | || |||| || | Sbjct: 18560 cttttgattccaaggcgaagattcaaatatttccccaacatcagggaactcttggtacgt 18501 Query: 447 tgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttctc 506 |||||||||||||||| |||| ||||||||| | |||||||| ||||||| ||||||| Sbjct: 18500 tgttgaatcgaaataaggaatgccaatctttcctaattttgtcatcatccaattgttctc 18441 Query: 507 gaattgg 513 ||||||| Sbjct: 18440 gaattgg 18434 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 282 gaattgagttagtcaagtccactatttcgtatacacgaaaaaggtatgata 332 ||||||||||||| ||||||||| |||||||||| |||||||||||||| Sbjct: 18668 gaattgagttagtaaagtccactctttcgtataccgaaaaaaggtatgata 18618
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 173 caatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaaga 222 ||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 407149 caattcgttcgaacttgcttagtagtgaattgggaacaagaagaaaaaga 407198
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 173 caatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaaga 222 ||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 406325 caattcgttcgaacttgcttagtagtgaattgggaacaagaagaaaaaga 406374
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 173 caatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaaga 222 ||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 406321 caattcgttcgaacttgcttagtagtgaattgggaacaagaagaaaaaga 406370
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 173 caatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaaga 222 ||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 406191 caattcgttcgaacttgcttagtagtgaattgggaacaagaagaaaaaga 406240
>dbj|D13099.1|RICMT03 Oryza sativa (japonica cultivar-group) mitochondrial gene for tRNA-Arg, complete sequence, clone:pMTVSCT4 Length = 1620 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 173 caatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaaga 222 ||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 160 caattcgttcgaacttgcttagtagtgaattgggaacaagaagaaaaaga 209
>gb|AY757830.1|AY757829S2 Acorus gramineus RpoC2 (rpoC2) gene, partial cds; chloroplast Length = 1809 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 231 gtgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagt 290 |||||||| ||||||| ||||| ||||| ||||||||| | |||||| |||||||||||| Sbjct: 212 gtgcttcctttgttgaagtaagggcaaacgatcttattagagatttcataagaattgagt 271 Query: 291 tagtcaagtccactatttcgtatac 315 || ||||||| |||||| |||||| Sbjct: 272 tatgcaagtccgctattttgtatac 296 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||||||||||| |||| |||||||||||| ||||||| |||| || |||||| Sbjct: 427 ttgttgaatcgaaataaggaatgccaatctttgattcttttgtcatcatctaattgttct 486 Query: 506 cgaattgg 513 |||||||| Sbjct: 487 cgaattgg 494 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 50 aatttagcaacacttttcccgcaggatctcttgca 84 ||||||||||| |||||||| |||||||| ||||| Sbjct: 22 aatttagcaacgcttttccctcaggatctattgca 56
>gb|DQ069541.1| Acorus americanus RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4158 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 231 gtgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagt 290 |||||||| ||||||| ||||| ||||| ||||||||| | |||||| |||||||||||| Sbjct: 2564 gtgcttcctttgttgaagtaagggcaaacgatcttattagagatttcataagaattgagt 2623 Query: 291 tagtcaagtccactatttcgtatac 315 || ||||||| |||||| |||||| Sbjct: 2624 tatgcaagtccgctattttgtatac 2648 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||||||||||| |||| |||||||||||| ||||||| |||| || |||| | Sbjct: 2779 ttgttgaatcgaaataaggaatgccaatctttgattcttttgtcatcatctaattgtttt 2838 Query: 506 cgaattgg 513 |||||||| Sbjct: 2839 cgaattgg 2846 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 153 gaatttatcacacaaatagtcaatttgttagaacttgcttagtagtgaattgggaacaag 212 |||||| |||||||| || |||||| ||| | |||||||||||| |||||||||| |||| Sbjct: 2477 gaatttctcacacaagtattcaattagttcgtacttgcttagtattgaattgggaccaag 2536 Query: 213 aagaaaa 219 || |||| Sbjct: 2537 aacaaaa 2543
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 231 gtgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagt 290 |||||||| ||||||| ||||| ||||| ||||||||| | |||||| |||||||||||| Sbjct: 18265 gtgcttcctttgttgaagtaagggcaaacgatcttattagagatttcataagaattgagt 18206 Query: 291 tagtcaagtccactatttcgtatac 315 || ||||||| |||||| |||||| Sbjct: 18205 tatgcaagtccgctattttgtatac 18181 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||||||||||| |||| |||||||||||| ||||||| |||| || |||| | Sbjct: 18050 ttgttgaatcgaaataaggaatgccaatctttgattcttttgtcatcatctaattgtttt 17991 Query: 506 cgaattgg 513 |||||||| Sbjct: 17990 cgaattgg 17983 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 153 gaatttatcacacaaatagtcaatttgttagaacttgcttagtagtgaattgggaacaag 212 |||||| |||||||| || |||||| ||| | |||||||||||| |||||||||| |||| Sbjct: 18352 gaatttctcacacaagtattcaattagttcgtacttgcttagtattgaattgggaccaag 18293 Query: 213 aagaaaa 219 || |||| Sbjct: 18292 aacaaaa 18286
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 79.8 bits (40), Expect = 9e-12 Identities = 90/107 (84%) Strand = Plus / Plus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||||||||||| |||| ||||||||||| |||||||| ||||||| |||||| Sbjct: 21976 ttgttgaatcgaaataaggaatctcaatctttgataattttgtcatcatccaattgttct 22035 Query: 506 cgaattggnttattcaagaattcaaaacatcccaatgcgataaaaga 552 ||||| || |||||| || |||| ||||||||| ||||||||| Sbjct: 22036 cgaataggcccattcaacgatgtaaaatatcccaatgtgataaaaga 22082
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 79.8 bits (40), Expect = 9e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 367 agatcgcgccaatagcaattctttttattccaaggcgaagattgaatcacttagccaaca 426 ||||||| ||||| |||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 21422 agatcgcatcaataccaatccttttttttccaaggcgaagactcaatcacttagccaaca 21363 Query: 427 tcaagaagctattggcactttgttgaatcgaaataa 462 ||||| | ||||| | || ||| ||||| ||||||| Sbjct: 21362 tcaaggaactattcgtacattgctgaatagaaataa 21327 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 153 gaatttatcacacaaatagtcaatttgttagaacttgcttagtagtgaattgggaacaag 212 |||||| |||||||| | |||||| ||| | |||||||||||| |||||||||| |||| Sbjct: 21651 gaatttttcacacaagcattcaattagttcggacttgcttagtattgaattgggatcaag 21592 Query: 213 a 213 | Sbjct: 21591 a 21591
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 173 caatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaaga 222 ||||| ||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 4638903 caattcgttcgaacttgcttagtagtgagttgggaacaagaagaaaaaga 4638854
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 173 caatttgttagaacttgcttagtagtgaattgggaacaagaagaaaaaga 222 ||||| ||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 91772 caattcgttcgaacttgcttagtagtgagttgggaacaagaagaaaaaga 91723
>gb|DQ069544.1| Ranunculus macranthus RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4128 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 152 agaatttatcacacaaatagtcaatttgttagaacttgcttagtagtgaattgggaacaa 211 ||||||| ||||||||||| |||||| ||| ||||||| |||||| |||||||||| ||| Sbjct: 2473 agaatttctcacacaaatattcaattagttcgaacttgtttagtattgaattgggaccaa 2532 Query: 212 ga 213 || Sbjct: 2533 ga 2534 Score = 44.1 bits (22), Expect = 0.52 Identities = 70/86 (81%) Strand = Plus / Plus Query: 425 catcaagaagctattggcactttgttgaatcgaaataaagaataccaatctttgatgatt 484 ||||||| | ||||| | || ||||||||| |||||| |||| |||||| ||||| | | Sbjct: 2761 catcaaggaactattcgtacgttgttgaataaaaataaggaatgccaatccttgataact 2820 Query: 485 ttgtcggcatccaactgttctcgaat 510 ||||| |||| || ||||||||||| Sbjct: 2821 ttgtcatcatctaattgttctcgaat 2846 Score = 42.1 bits (21), Expect = 2.1 Identities = 57/69 (82%) Strand = Plus / Plus Query: 256 aaatgatcttattcgcgatttcctaagaattgagttagtcaagtccactatttcgtatac 315 ||||| ||| ||||| |||||| ||| ||| || ||||| |||| | ||||||||||||| Sbjct: 2589 aaatgctctgattcgagatttcataaaaatggacttagtgaagtaccctatttcgtatac 2648 Query: 316 acgaaaaag 324 ||||||| Sbjct: 2649 cagaaaaag 2657
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 67.9 bits (34), Expect = 4e-08 Identities = 90/109 (82%) Strand = Plus / Plus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||||||||||| |||| ||||||||||| |||||||| ||||||| |||| | Sbjct: 21916 ttgttgaatcgaaataaggaatctcaatctttgataattttgtcatcatccaattgtttt 21975 Query: 506 cgaattggnttattcaagaattcaaaacatcccaatgcgataaaagaat 554 ||||| || |||||| || |||| |||||||| ||||||||||| Sbjct: 21976 cgaataggcccattcaacgatgtaaaatctcccaatgtgataaaagaat 22024 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 49 aaatttagcaacacttttcccgcaggatctcttgcaagaagaaaataatctccaaattcg 108 |||||||| || ||||||||||| |||||||||||| ||| ||||||| ||| |||| Sbjct: 21504 aaatttaggaagacttttcccgccggatctcttgcaggaaagtgataatctacaacttcg 21563 Query: 109 acttgtcaatt 119 | ||||||||| Sbjct: 21564 agttgtcaatt 21574
>gb|AY865171.1| Lactuca sativa chloroplast inversion region Length = 28722 Score = 67.9 bits (34), Expect = 4e-08 Identities = 90/109 (82%) Strand = Plus / Plus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||||||||||| |||| ||||||||||| |||||||| ||||||| |||| | Sbjct: 15856 ttgttgaatcgaaataaggaatctcaatctttgataattttgtcatcatccaattgtttt 15915 Query: 506 cgaattggnttattcaagaattcaaaacatcccaatgcgataaaagaat 554 ||||| || |||||| || |||| |||||||| ||||||||||| Sbjct: 15916 cgaataggcccattcaacgatgtaaaatctcccaatgtgataaaagaat 15964 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 49 aaatttagcaacacttttcccgcaggatctcttgcaagaagaaaataatctccaaattcg 108 |||||||| || ||||||||||| |||||||||||| ||| ||||||| ||| |||| Sbjct: 15444 aaatttaggaagacttttcccgccggatctcttgcaggaaagtgataatctacaacttcg 15503 Query: 109 acttgtcaatt 119 | ||||||||| Sbjct: 15504 agttgtcaatt 15514
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 67.9 bits (34), Expect = 4e-08 Identities = 90/109 (82%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||| ||||||| |||| |||||||||||| |||||||| ||||||| |||| | Sbjct: 19230 ttgttgaatagaaataaggaatgccaatctttgataattttgtcatcatccaattgtttt 19171 Query: 506 cgaattggnttattcaagaattcaaaacatcccaatgcgataaaagaat 554 ||||| || |||||| || |||| ||| ||||| ||||||||||| Sbjct: 19170 cgaatgggtccattcaacgatgtaaaatatcacaatgtgataaaagaat 19122
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 67.9 bits (34), Expect = 4e-08 Identities = 90/109 (82%) Strand = Plus / Plus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||||||||||| |||| ||||||||||| |||||||| ||||||| |||| | Sbjct: 21916 ttgttgaatcgaaataaggaatctcaatctttgataattttgtcatcatccaattgtttt 21975 Query: 506 cgaattggnttattcaagaattcaaaacatcccaatgcgataaaagaat 554 ||||| || |||||| || |||| |||||||| ||||||||||| Sbjct: 21976 cgaataggcccattcaacgatgtaaaatctcccaatgtgataaaagaat 22024 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 49 aaatttagcaacacttttcccgcaggatctcttgcaagaagaaaataatctccaaattcg 108 |||||||| || ||||||||||| |||||||||||| ||| ||||||| ||| |||| Sbjct: 21504 aaatttaggaagacttttcccgccggatctcttgcaggaaagtgataatctacaacttcg 21563 Query: 109 acttgtcaatt 119 | ||||||||| Sbjct: 21564 agttgtcaatt 21574
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 63.9 bits (32), Expect = 6e-07 Identities = 82/99 (82%) Strand = Plus / Minus Query: 456 gaaataaagaataccaatctttgatgattttgtcggcatccaactgttctcgaattggnt 515 ||||||| |||| |||||||||||| |||||||| ||||||| ||||||||||| || Sbjct: 19532 gaaataaggaatgccaatctttgataattttgtcatcatccaattgttctcgaatgggtc 19473 Query: 516 tattcaagaattcaaaacatcccaatgcgataaaagaat 554 |||||| || |||| ||| ||||| ||||||||||| Sbjct: 19472 cattcaacgatgtaaaatatcacaatgtgataaaagaat 19434 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 49 aaatttagcaacacttttcccgcaggatctcttgca 84 ||||||||||||||||||||| |||||||| ||||| Sbjct: 19975 aaatttagcaacacttttccctcaggatctgttgca 19940
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 234 cttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagttag 293 ||||| ||||||| ||||| |||||| ||| ||||| ||||||||||||||||| |||| Sbjct: 19595 cttcctttgttgaagtaagtacaaatggtctgattcgagatttcctaagaattgacttag 19536 Query: 294 tcaagtccactatttcgtat 313 | || | | ||||||||||| Sbjct: 19535 tgaaattccctatttcgtat 19516 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 49 aaatttagcaacacttttcccgcaggatctcttgcaagaa 88 ||||||||||||||| ||||| | |||||| || |||||| Sbjct: 19792 aaatttagcaacactcttccccccggatctgttacaagaa 19753
>gb|DQ069543.1| Nuphar advena RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4170 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 248 gtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtccactatt 307 ||||||||||||||||| ||||| ||||| |||||||||| || || ||||| ||||| Sbjct: 2599 gtaagagcaaatgatctgattcgatatttcataagaattgatttggtgaagtctcctatt 2658 Query: 308 tcgtatacacgaaaaaggtatgatagg 334 | |||||| |||| ||| |||||||| Sbjct: 2659 ttgtatactggaaagaggaatgatagg 2685
>gb|AY521596.1| Cucumis sativus isolate GY-14, chloroplast sequence Length = 16653 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatc 495 ||||||||| ||||||||||| |||||||||||| |||||||| ||||| Sbjct: 8158 ttgttgaatagaaataaagaacgccaatctttgataattttgtcagcatc 8109
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatc 495 ||||||||| ||||||||||| |||||||||||| |||||||| ||||| Sbjct: 18759 ttgttgaatagaaataaagaacgccaatctttgataattttgtcagcatc 18710
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatc 495 ||||||||| ||||||||||| |||||||||||| |||||||| ||||| Sbjct: 18748 ttgttgaatagaaataaagaacgccaatctttgataattttgtcagcatc 18699
>emb|X03912.1|CHPSATPA Pea chloroplast DNA (4.7 kb) 5' to ATP-synthase a subunit gene Length = 4680 Score = 54.0 bits (27), Expect = 5e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 411 aatcacttagccaacatcaagaagctattggcactttgttgaatcgaaataaagaatacc 470 |||||||||||||| |||| | | ||||| | | ||||||||| |||||||||||| || Sbjct: 2130 aatcacttagccaaaatcacggaactattcgtatgttgttgaatagaaataaagaatgcc 2189 Query: 471 aatctttgatgattttgtc 489 ||||| ||| |||||||| Sbjct: 2190 gatcttggataattttgtc 2208
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 248 gtaagagcaaatgatcttattcgcgatttcctaagaattgagttagtcaagtccactatt 307 ||||| ||||||||||| ||||| ||||| |||||||||| || || ||||| ||||| Sbjct: 20097 gtaagggcaaatgatctgattcgatatttcataagaattgatttggtgaagtctcctatt 20038 Query: 308 tcgtatacacgaaaaaggtatgatagg 334 | |||||| |||| ||| |||||||| Sbjct: 20037 ttgtataccggaaagaggaatgatagg 20011
>dbj|AB189069.1| Silene latifolia chloroplast DNA, partial sequence, rpoB gene to rps7 gene region Length = 47249 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 50 aatttagcaacacttttcccgcaggatctcttgcaagaa 88 ||||||||||||||||| || |||||||| ||||||||| Sbjct: 9640 aatttagcaacacttttgcctcaggatctgttgcaagaa 9678
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.008 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 119 tttatttatcatgaaaatagcaagttaactcaaa-gaatttatcacacaaatagtca 174 ||||||| |||| ||| || |||||||||| ||| ||||||||||||| |||||||| Sbjct: 3516220 tttatttctcataaaattaacaagttaacttaaaagaatttatcacacgaatagtca 3516164
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||| ||||||| |||| || || ||||| |||||||| ||| |||| |||||| Sbjct: 18282 ttgttgaatagaaataaggaatgtcagtcgttgataattttgtcagcagccaattgttct 18223 Query: 506 cgaat 510 ||||| Sbjct: 18222 cgaat 18218
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.008 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 119 tttatttatcatgaaaatagcaagttaactcaaa-gaatttatcacacaaatagtca 174 ||||||| |||| ||| || |||||||||| ||| ||||||||||||| |||||||| Sbjct: 3516331 tttatttctcataaaattaacaagttaacttaaaagaatttatcacacgaatagtca 3516275
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 50.1 bits (25), Expect = 0.008 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 119 tttatttatcatgaaaatagcaagttaactcaaa-gaatttatcacacaaatagtca 174 ||||||| |||| ||| || |||||||||| ||| ||||||||||||| |||||||| Sbjct: 33873 tttatttctcataaaattaacaagttaacttaaaagaatttatcacacgaatagtca 33817
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||| ||||||| |||| || || ||||| |||||||| ||| |||| |||||| Sbjct: 18140 ttgttgaatagaaataaggaatgtcagtcgttgataattttgtcagcagccaattgttct 18081 Query: 506 cgaat 510 ||||| Sbjct: 18080 cgaat 18076
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||| ||||||| |||| || || ||||| |||||||| ||| |||| |||||| Sbjct: 18137 ttgttgaatagaaataaggaatgtcagtcgttgataattttgtcagcagccaattgttct 18078 Query: 506 cgaat 510 ||||| Sbjct: 18077 cgaat 18073
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||| ||||||| |||| || || ||||| |||||||| ||| |||| |||||| Sbjct: 18170 ttgttgaatagaaataaggaatgtcagtcgttgataattttgtcagcagccaattgttct 18111 Query: 506 cgaat 510 ||||| Sbjct: 18110 cgaat 18106
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||| ||||||| |||| || || ||||| |||||||| ||| |||| |||||| Sbjct: 18282 ttgttgaatagaaataaggaatgtcagtcgttgataattttgtcagcagccaattgttct 18223 Query: 506 cgaat 510 ||||| Sbjct: 18222 cgaat 18218
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 48.1 bits (24), Expect = 0.033 Identities = 54/64 (84%) Strand = Plus / Minus Query: 231 gtgcttcccttgttgaggtaagagcaaatgatcttattcgcgatttcctaagaattgagt 290 ||||||| ||||||| ||||| |||||| ||| ||||| |||||||||||||| || | Sbjct: 18915 gtgcttcttttgttgaagtaaggacaaatggtctgattcgagatttcctaagaatcgact 18856 Query: 291 tagt 294 |||| Sbjct: 18855 tagt 18852 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Minus Query: 456 gaaataaagaataccaatctttgatgattttgtcggcatc 495 ||||||| |||| |||||||||||| |||||||| ||||| Sbjct: 18678 gaaataaggaatcccaatctttgataattttgtcagcatc 18639 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 49 aaatttagcaacacttttcccgcaggatc 77 ||||||||||||||| ||||| ||||||| Sbjct: 19109 aaatttagcaacactcttcccccaggatc 19081
>gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome 7, complete sequence Length = 232770 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaaggc 228 ||||||||||||||||||||||| Sbjct: 78713 gaacaagaagaaaaagaaaaggc 78735
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 50 aatttagcaacacttttcccgcaggat 76 |||||||||||||||||||| |||||| Sbjct: 17099 aatttagcaacacttttccctcaggat 17073
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 46.1 bits (23), Expect = 0.13 Identities = 65/79 (82%) Strand = Plus / Minus Query: 411 aatcacttagccaacatcaagaagctattggcactttgttgaatcgaaataaagaatacc 470 |||||||||||||| |||| | | ||||| | | ||||||||| ||||||| |||| || Sbjct: 80715 aatcacttagccaaaatcacggaactattcgtatgttgttgaatagaaataaggaatgcc 80656 Query: 471 aatctttgatgattttgtc 489 ||||| ||| |||||||| Sbjct: 80655 gatcttggataattttgtc 80637
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 183 gaacttgcttagtagtgaattgggaa 208 |||||| ||||||||||||||||||| Sbjct: 99282 gaacttacttagtagtgaattgggaa 99257
>gb|AC145877.3| Pan troglodytes BAC clone RP43-20I7 from 7, complete sequence Length = 192794 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 208 acaagaagaaaaagaaaaggctggtg 233 |||||||||||||||||| ||||||| Sbjct: 150640 acaagaagaaaaagaaaaagctggtg 150615
>emb|CR956383.8| Pig DNA sequence from clone CH242-271L5 on chromosome 17, complete sequence Length = 163007 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 taactcaaagaatttatcacac 165 |||||||||||||||||||||| Sbjct: 26592 taactcaaagaatttatcacac 26571
>ref|XM_646614.1| Entamoeba histolytica HM-1:IMSS Rap/Ran GTPase activating protein (151.t00010) partial mRNA Length = 1689 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 caagaagaaaaagaaaaggctg 230 |||||||||||||||||||||| Sbjct: 127 caagaagaaaaagaaaaggctg 148
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatc 495 ||||| |||| |||||| |||| || ||||||||||||||||| ||||| Sbjct: 48322 ttgttaaatcaaaataaggaatgcccgtctttgatgattttgtccgcatc 48371
>gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chromosome unknown, complete sequence Length = 175955 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 137720 attgagttagtcaagtcctctatttc 137695
>gb|DP000055.1| Pan troglodytes chromosome Y chry_random_1 genomic scaffold Length = 276070 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 206521 attgagttagtcaagtcctctatttc 206546
>gb|DP000056.1| Pan troglodytes chromosome Y chry_random_3 genomic scaffold Length = 331329 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 268200 attgagttagtcaagtcctctatttc 268225
>gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, complete sequence Length = 170763 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaaggctggtg 233 |||||||||||||||||| ||||||| Sbjct: 20233 acaagaagaaaaagaaaaagctggtg 20258
>gb|AC172372.2| Pan troglodytes BAC clone CH251-1067L6 from chromosome y, complete sequence Length = 192570 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 151171 attgagttagtcaagtcctctatttc 151146
>gb|AC011841.7| Homo sapiens chromosome 17, clone RP11-272E10, complete sequence Length = 174588 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 80320 attgagttagtcaagtcctctatttc 80295
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 183 gaacttgcttagtagtgaattgggaa 208 |||||| ||||||||||||||||||| Sbjct: 11795603 gaacttacttagtagtgaattgggaa 11795628 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 aacaagaagaaaaagaaaagg 227 ||||||||||||||||||||| Sbjct: 4173479 aacaagaagaaaaagaaaagg 4173459
>gb|AC175060.2| Pan troglodytes BAC clone CH251-724O9 from chromosome y, complete sequence Length = 196548 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 125321 attgagttagtcaagtcctctatttc 125346
>gb|AC078844.2|AC078844 Homo sapiens chromosome 7 clone RP11-786M13, complete sequence Length = 186927 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaaggctggtg 233 |||||||||||||||||| ||||||| Sbjct: 101841 acaagaagaaaaagaaaaagctggtg 101866
>gb|AC172373.3| Pan troglodytes BAC clone CH251-1081D19 from chromosome y, complete sequence Length = 194913 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 95161 attgagttagtcaagtcctctatttc 95136
>gb|AC163726.3| Pan troglodytes BAC clone CH251-653B19 from chromosome y, complete sequence Length = 207364 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 144237 attgagttagtcaagtcctctatttc 144262
>gb|AC163728.4| Pan troglodytes BAC clone CH251-589C1 from chromosome y, complete sequence Length = 206451 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 140241 attgagttagtcaagtcctctatttc 140266
>gb|AC163716.3| Pan troglodytes BAC clone CH251-828J24 from chromosome y, complete sequence Length = 165274 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 26360 attgagttagtcaagtcctctatttc 26335
>gb|AC175059.2| Pan troglodytes BAC clone CH251-777D16 from chromosome y, complete sequence Length = 166448 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 284 attgagttagtcaagtccactatttc 309 |||||||||||||||||| ||||||| Sbjct: 98207 attgagttagtcaagtcctctatttc 98182
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 183 gaacttgcttagtagtgaattgggaa 208 |||||| ||||||||||||||||||| Sbjct: 11874014 gaacttacttagtagtgaattgggaa 11874039 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 aacaagaagaaaaagaaaagg 227 ||||||||||||||||||||| Sbjct: 4182173 aacaagaagaaaaagaaaagg 4182153
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 245 gaggtaagagcaaatgatcttattcgcgatttcc 278 ||||||||||| ||||||||| |||| ||||||| Sbjct: 68014 gaggtaagagcgaatgatctttttcgtgatttcc 68047 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 aaggtatgataggacaagtg 341 |||||||||||||||||||| Sbjct: 331160 aaggtatgataggacaagtg 331179
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 44.1 bits (22), Expect = 0.52 Identities = 87/109 (79%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||| ||| ||||||| |||| || || ||||| |||||||| ||| |||| |||||| Sbjct: 18499 ttgttaaatagaaataaggaatgtcagtcgttgataattttgtcagcagccaattgttct 18440 Query: 506 cgaattggnttattcaagaattcaaaacatcccaatgcgataaaagaat 554 ||||| || ||||||| || |||| ||| || || ||||||||||| Sbjct: 18439 cgaatggggccattcaaggatgtaaaatatcacagtgtgataaaagaat 18391
>ref|XM_480125.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2315 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaaa 225 ||||||||||||||||||||| Sbjct: 939 ggaacaagaagaaaaagaaaa 959
>gb|AC146328.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0018J01, complete sequence Length = 82510 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 aacaagaagaaaaagaaaagg 227 ||||||||||||||||||||| Sbjct: 47331 aacaagaagaaaaagaaaagg 47351
>gb|AC184800.2| Pan troglodytes chromosome X clone PTB-18K16 map human ortholog p11.23, complete sequence Length = 142154 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 aacaagaagaaaaagaaaagg 227 ||||||||||||||||||||| Sbjct: 104452 aacaagaagaaaaagaaaagg 104432
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||| ||| ||||||| |||| || || ||||| |||||||| ||| |||| |||||| Sbjct: 18549 ttgttaaatagaaataaggaatgtcagtcgttgataattttgtcagcagccaattgttct 18490 Query: 506 cgaat 510 ||||| Sbjct: 18489 cgaat 18485
>emb|CR954189.2| Medicago truncatula chromosome 5 clone mte1-73d17, COMPLETE SEQUENCE Length = 110556 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 aacaagaagaaaaagaaaagg 227 ||||||||||||||||||||| Sbjct: 16976 aacaagaagaaaaagaaaagg 16996
>gb|AC132366.4| Mus musculus BAC clone RP23-461N12 from chromosome 7, complete sequence Length = 183964 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 ttgcaagaagaaaataatctc 100 ||||||||||||||||||||| Sbjct: 84255 ttgcaagaagaaaataatctc 84275
>emb|AJ243754.2|SAL243754 Sinapis alba chloroplast rpoB operon (rpoB, rpoC1 and rpoC2 genes) Length = 11206 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 49 aaatttagcaacacttttcccgcaggatctctt 81 ||||||||||||||| |||||| | |||||||| Sbjct: 9264 aaatttagcaacactcttcccgaaagatctctt 9296 Score = 40.1 bits (20), Expect = 8.1 Identities = 50/60 (83%) Strand = Plus / Plus Query: 266 attcgcgatttcctaagaattgagttagtcaagtccactatttcgtatacacgaaaaagg 325 ||||| |||||| ||||||||| ||||| || ||| ||||||||||| | |||||||| Sbjct: 9493 attcgagatttcataagaattggcttagtgaaatcccatatttcgtatataagaaaaagg 9552
>gb|AC127344.3| Mus musculus BAC clone RP23-212H18 from chromosome 7, complete sequence Length = 182487 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 gggaacaagaagaaaaagaaaaggc 228 |||||||| |||||||||||||||| Sbjct: 101713 gggaacaaaaagaaaaagaaaaggc 101689
>gb|AC146587.20| Medicago truncatula clone mth2-144j8, complete sequence Length = 113373 Score = 42.1 bits (21), Expect = 2.1 Identities = 48/57 (84%) Strand = Plus / Plus Query: 411 aatcacttagccaacatcaagaagctattggcactttgttgaatcgaaataaagaat 467 |||||||||||||| |||| ||| ||||| | | ||||||||| ||||||| |||| Sbjct: 22798 aatcacttagccaaaatcacgaaactattcgtatgttgttgaatagaaataaggaat 22854
>gb|AC111083.13| Mus musculus chromosome 3, clone RP23-142D9, complete sequence Length = 206194 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 agagcaaatgatcttattcgc 271 ||||||||||||||||||||| Sbjct: 8239 agagcaaatgatcttattcgc 8259
>emb|AL451146.7| Human DNA sequence from clone RP11-510K18 on chromosome 10 Contains a serine/threonine protein kinase pseudogene, complete sequence Length = 200891 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 ttgtcaattttatttatcatgaaaa 135 |||||||||||||||||||| |||| Sbjct: 36045 ttgtcaattttatttatcattaaaa 36069
>gb|AC103987.5| Homo sapiens chromosome 18, clone RP11-268I9, complete sequence Length = 163972 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 aagaattcaaaacatcccaat 541 ||||||||||||||||||||| Sbjct: 49943 aagaattcaaaacatcccaat 49923
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||||||| ||||||| |||| || || ||||| |||||||| || |||| |||||| Sbjct: 18311 ttgttgaatagaaataaggaatgtcagtcgttgataattttgtcatcagccaattgttct 18252 Query: 506 cgaat 510 ||||| Sbjct: 18251 cgaat 18247
>gb|AC116916.2| Homo sapiens chromosome 18, clone CTD-3070B10, complete sequence Length = 54636 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 aagaattcaaaacatcccaat 541 ||||||||||||||||||||| Sbjct: 43298 aagaattcaaaacatcccaat 43278
>gb|AC009721.9| Homo sapiens 12q24.1-116.6-118.9 BAC RP11-129O9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166765 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 456 gaaataaagaataccaatctt 476 ||||||||||||||||||||| Sbjct: 45042 gaaataaagaataccaatctt 45062
>gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complete sequence Length = 126750 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 tcaaaacatcccaatgcgata 547 ||||||||||||||||||||| Sbjct: 120694 tcaaaacatcccaatgcgata 120714
>ref|XM_625286.1| PREDICTED: Apis mellifera hypothetical protein LOC552459 (LOC552459), mRNA Length = 1825 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 attttatttatcatgaaaata 137 ||||||||||||||||||||| Sbjct: 1726 attttatttatcatgaaaata 1706
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaaa 225 ||||||||||||||||||||| Sbjct: 2968282 ggaacaagaagaaaaagaaaa 2968302
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 49 aaatttagcaacacttttcccgcaggatctctt 81 ||||||||||||||| ||||| || |||||||| Sbjct: 17339 aaatttagcaacactcttcccacaagatctctt 17307 Score = 40.1 bits (20), Expect = 8.1 Identities = 50/60 (83%) Strand = Plus / Minus Query: 266 attcgcgatttcctaagaattgagttagtcaagtccactatttcgtatacacgaaaaagg 325 ||||| |||||| ||||||||| ||||| || ||| ||||||||||| | |||||||| Sbjct: 17110 attcgagatttcataagaattggcttagtgaaatcccatatttcgtatataagaaaaagg 17051
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaaa 225 ||||||||||||||||||||| Sbjct: 141344 ggaacaagaagaaaaagaaaa 141364
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaaa 225 ||||||||||||||||||||| Sbjct: 19005 ggaacaagaagaaaaagaaaa 19025
>dbj|AK073149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010L07, full insert sequence Length = 2315 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaaa 225 ||||||||||||||||||||| Sbjct: 939 ggaacaagaagaaaaagaaaa 959
>gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, complete sequence Length = 180681 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 agagcaaatgatcttattcgc 271 ||||||||||||||||||||| Sbjct: 40348 agagcaaatgatcttattcgc 40328
>gb|AC148977.3| Mus musculus BAC clone RP23-387F1 from 7, complete sequence Length = 201967 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 gggaacaagaagaaaaagaaaaggc 228 |||||||| |||||||||||||||| Sbjct: 193005 gggaacaaaaagaaaaagaaaaggc 192981
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 446 ttgttgaatcgaaataaagaataccaatctttgatgattttgtcggcatccaactgttct 505 ||||| ||| ||||||| |||| || || ||||| |||||||| ||| |||| |||||| Sbjct: 18547 ttgttaaatagaaataaggaatgtcagtcgttgataattttgtcagcagccaattgttct 18488 Query: 506 cgaat 510 ||||| Sbjct: 18487 cgaat 18483
>emb|AL604045.7| Mouse DNA sequence from clone RP23-418O11 on chromosome 11, complete sequence Length = 221399 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 aacaagaagaaaaagaaaagg 227 ||||||||||||||||||||| Sbjct: 100174 aacaagaagaaaaagaaaagg 100194
>dbj|D87922.1| Rat DNA for 3'UTR of skeletal muscle sodium channel, partial sequence Length = 1867 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 aacaagaagaaaaagaaaagg 227 ||||||||||||||||||||| Sbjct: 967 aacaagaagaaaaagaaaagg 947
>gb|AY803272.1| Homo sapiens AKAP9-BRAF fusion protein mRNA, complete cds Length = 4567 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 2241 acaagaagaaaaagaaaagg 2260
>ref|NM_110965.1| Arabidopsis thaliana unknown protein AT3G01015 mRNA, complete cds Length = 1467 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aatctccaaattcgacttgt 114 |||||||||||||||||||| Sbjct: 469 aatctccaaattcgacttgt 450
>ref|XM_631229.1| Dictyostelium discoideum hypothetical protein (DDB0188343), partial mRNA Length = 3111 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 139 gaacaagaagaaaaagaaaa 158
>ref|XM_519576.1| PREDICTED: Pan troglodytes LOC463952 (LOC463952), mRNA Length = 2805 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 771 acaagaagaaaaagaaaagg 790
>gb|AY735598.1| Arabidopsis thaliana hypothetical protein AT3G01015 mRNA, complete cds Length = 1754 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aatctccaaattcgacttgt 114 |||||||||||||||||||| Sbjct: 611 aatctccaaattcgacttgt 592
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaa 224 |||||||||||||||||||| Sbjct: 1476350 ggaacaagaagaaaaagaaa 1476369
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaa 224 |||||||||||||||||||| Sbjct: 1452017 ggaacaagaagaaaaagaaa 1452036
>gb|AC183665.2| Pan troglodytes BAC clone CH251-655J2 from chromosome unknown, complete sequence Length = 194692 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 87390 acaagaagaaaaagaaaagg 87409
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaa 224 |||||||||||||||||||| Sbjct: 1451962 ggaacaagaagaaaaagaaa 1451981
>gb|AC154330.2| Mus musculus BAC clone RP23-286H23 from chromosome 16, complete sequence Length = 203553 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 aagaattcaaaacatcccaa 540 |||||||||||||||||||| Sbjct: 74151 aagaattcaaaacatcccaa 74132
>gb|AC164554.2| Mus musculus BAC clone RP23-351O14 from chromosome 17, complete sequence Length = 192632 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 gggaacaagaagaaaaagaaaagg 227 ||||| |||||||||||||||||| Sbjct: 85798 gggaaaaagaagaaaaagaaaagg 85775
>gb|DQ222853.1| Bacillus anthracis phage Gamma isolate 51, complete genome Length = 37253 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 27684 gaacaagaagaaaaagaaaa 27703
>gb|DQ222851.1| Bacillus anthracis phage Cherry, complete genome Length = 36615 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 27046 gaacaagaagaaaaagaaaa 27065
>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence, complete sequence Length = 93735 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aatctccaaattcgacttgt 114 |||||||||||||||||||| Sbjct: 93616 aatctccaaattcgacttgt 93597
>emb|Z79755.1|CEF43G9 Caenorhabditis elegans Cosmid F43G9, complete sequence Length = 38166 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gaagaaaaagaaaaggctgg 231 |||||||||||||||||||| Sbjct: 20435 gaagaaaaagaaaaggctgg 20416
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cacaaatagtcaatttgttagaac 186 |||||| ||||||||||||||||| Sbjct: 258953 cacaaacagtcaatttgttagaac 258976
>ref|XM_725896.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03026) partial mRNA Length = 4443 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 102 aaattcgacttgtcaattttatttatca 129 |||||||| || |||||||||||||||| Sbjct: 4341 aaattcgatttttcaattttatttatca 4368
>ref|XM_960931.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0165c) partial mRNA Length = 3312 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 934 gaacaagaagaaaaagaaaa 953
>gb|AC011294.3| Homo sapiens BAC clone RP11-95J15 from 7, complete sequence Length = 166715 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 agaagaaaataatctccaaa 104 |||||||||||||||||||| Sbjct: 104798 agaagaaaataatctccaaa 104817
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaa 224 |||||||||||||||||||| Sbjct: 1486967 ggaacaagaagaaaaagaaa 1486986
>emb|AL590868.10| Human DNA sequence from clone RP11-105L5 on chromosome 6 Contains part of the gene for phenylalanine-tRNA synthetase (FARS1), complete sequence Length = 71257 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 aagaagaaaaagaaaaggct 229 |||||||||||||||||||| Sbjct: 37843 aagaagaaaaagaaaaggct 37824
>emb|AL359457.12| Human DNA sequence from clone RP11-76K19 on chromosome 13 Contains a mitochondrial ribosomal protein S31 (MRPS31) pseudogene an estrogen-related receptor alpha pseudogene (ESRRAP), the 5' end of a novel gene, a novel protein (LOC113201) pseudogene, a novel gene and four CpG islands, complete sequence Length = 129779 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tgcaagaagaaaataatctc 100 |||||||||||||||||||| Sbjct: 52340 tgcaagaagaaaataatctc 52321
>emb|AL162717.10| Human DNA sequence from clone RP11-123H22 on chromosome 13q14.2-21.2 Contains a novel gene, complete sequence Length = 153859 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cacaaatagtcaatttgttagaac 186 |||||| ||||||||||||||||| Sbjct: 138483 cacaaacagtcaatttgttagaac 138506
>gb|DQ289555.1| Bacillus anthracis phage W Beta, complete genome Length = 40867 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 29845 gaacaagaagaaaaagaaaa 29864
>gb|DQ289556.1| Bacillus anthracis phage Gamma isolate d'Herelle, complete genome Length = 37373 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 27813 gaacaagaagaaaaagaaaa 27832
>emb|AL117353.6|HSJ944F13 Human DNA sequence from clone RP5-944F13 on chromosome 1p31.2-32.1 Contains part of gene KIAA1365, complete sequence Length = 113515 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 aacaagaagaaaaagaaaag 226 |||||||||||||||||||| Sbjct: 5111 aacaagaagaaaaagaaaag 5092
>gb|AC139100.3| Homo sapiens chromosome 18, clone, complete sequence Length = 276546 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ctggtgcttcccttgttgag 247 |||||||||||||||||||| Sbjct: 187615 ctggtgcttcccttgttgag 187596
>emb|CR626928.1| Bacteroides fragilis NCTC 9343 pBF9343 plasmid Length = 36560 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 agaagaaaaagaaaaggctg 230 |||||||||||||||||||| Sbjct: 21768 agaagaaaaagaaaaggctg 21787
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5 Length = 349418 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 135525 gaacaagaagaaaaagaaaa 135506
>emb|AL670005.1|NCB11H24 Neurospora crassa DNA linkage group V BAC clone B11H24 Length = 72580 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 69216 gaacaagaagaaaaagaaaa 69197
>emb|AL513444.1|NCB11N2 Neurospora crassa DNA linkage group V BAC contig B11N2 Length = 99360 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 95019 gaacaagaagaaaaagaaaa 95038
>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence Length = 256719 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 69960 gaacaagaagaaaaagaaaa 69979
>gb|DQ056582.1| Arabidopsis thaliana hypothetical protein (At3g01015) mRNA, complete cds Length = 1467 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aatctccaaattcgacttgt 114 |||||||||||||||||||| Sbjct: 469 aatctccaaattcgacttgt 450
>gb|AC127503.3| Homo sapiens chromosome 18, clone RP11-245M2, complete sequence Length = 145418 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ctggtgcttcccttgttgag 247 |||||||||||||||||||| Sbjct: 85891 ctggtgcttcccttgttgag 85910
>gb|AC068530.16| Homo sapiens chromosome 18, clone RP11-565D23, complete sequence Length = 166392 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ctggtgcttcccttgttgag 247 |||||||||||||||||||| Sbjct: 91397 ctggtgcttcccttgttgag 91378
>ref|NM_005751.3| Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9), transcript variant 2, mRNA Length = 12462 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 2418 acaagaagaaaaagaaaagg 2437
>ref|NM_147171.1| Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9), transcript variant 1, mRNA Length = 12474 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 2454 acaagaagaaaaagaaaagg 2473
>ref|NM_147166.1| Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9), transcript variant 4, mRNA Length = 6058 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 2454 acaagaagaaaaagaaaagg 2473
>ref|NM_147185.1| Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9), transcript variant 3, mRNA Length = 12450 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 2418 acaagaagaaaaagaaaagg 2437
>gb|AC099687.5| Homo sapiens chromosome 11, clone CTD-2507G9, complete sequence Length = 167577 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ttttatttatcatgaaaata 137 |||||||||||||||||||| Sbjct: 33333 ttttatttatcatgaaaata 33314
>dbj|AK056304.1| Homo sapiens cDNA FLJ31742 fis, clone NT2RI2007214 Length = 3205 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ctggtgcttcccttgttgag 247 |||||||||||||||||||| Sbjct: 824 ctggtgcttcccttgttgag 805
>gb|AC067819.10| Homo sapiens chromosome 18, clone RP11-585K6, complete sequence Length = 216972 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 aattcaaaacatcccaatgc 543 |||||||||||||||||||| Sbjct: 174771 aattcaaaacatcccaatgc 174752
>gb|AC025895.9| Homo sapiens, clone RP11-610C20, complete sequence Length = 179113 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ttgggaacaagaagaaaaagaaaa 225 ||||||||||||||||||| |||| Sbjct: 35670 ttgggaacaagaagaaaaacaaaa 35693
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 2300901 gaacaagaagaaaaagaaaa 2300882
>dbj|AP005827.1| Mus musculus genomic DNA, chromosome 16 clone:RP21-668B6, complete sequence Length = 214865 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 aagaattcaaaacatcccaa 540 |||||||||||||||||||| Sbjct: 151556 aagaattcaaaacatcccaa 151575
>emb|BX890601.10| Zebrafish DNA sequence from clone CH211-51F19 in linkage group 14, complete sequence Length = 124859 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 105164 gaacaagaagaaaaagaaaa 105183
>dbj|AK035814.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630007E23 product:hypothetical protein, full insert sequence Length = 1461 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 796 gaacaagaagaaaaagaaaa 815
>dbj|AK028922.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732470M22 product:hypothetical protein, full insert sequence Length = 3679 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 603 gaacaagaagaaaaagaaaa 622
>ref|NM_059936.2| Caenorhabditis elegans FERtilization defective (abnormal sperm) family member (fer-1) (fer-1) mRNA, complete cds Length = 6174 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 gaagaaaaagaaaaggctgg 231 |||||||||||||||||||| Sbjct: 4033 gaagaaaaagaaaaggctgg 4052
>dbj|AK034159.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330160J08 product:unclassifiable, full insert sequence Length = 2230 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 497 gaacaagaagaaaaagaaaa 516
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 aaaaaggtatgataggacaa 338 |||||||||||||||||||| Sbjct: 24630196 aaaaaggtatgataggacaa 24630177
>gb|AC090514.1|AC090514 Homo sapiens chromosome 15 clone RP11-2O16 map 15q15, complete sequence Length = 166518 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 129 atgaaaatagcaagttaactcaaagaat 156 ||||||||||| ||| |||||||||||| Sbjct: 166388 atgaaaatagccagtaaactcaaagaat 166415
>gb|AC068724.7|AC068724 Homo sapiens chromosome 15 clone RP11-473C18 map 15q15, complete sequence Length = 190727 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 129 atgaaaatagcaagttaactcaaagaat 156 ||||||||||| ||| |||||||||||| Sbjct: 9574 atgaaaatagccagtaaactcaaagaat 9601
>gb|AC154340.3| Mus musculus BAC clone RP23-238B22 from chromosome 14, complete sequence Length = 210115 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 aacaagaagaaaaagaaaag 226 |||||||||||||||||||| Sbjct: 124548 aacaagaagaaaaagaaaag 124567
>gb|AC067753.4|AC067753 Arabidopsis thaliana chromosome 3 BAC TEL3N genomic sequence, complete sequence Length = 4580 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aatctccaaattcgacttgt 114 |||||||||||||||||||| Sbjct: 1025 aatctccaaattcgacttgt 1006
>gb|AC112715.4| Homo sapiens BAC clone RP11-370L10 from 2, complete sequence Length = 99901 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ttgggaacaagaagaaaaagaaaa 225 ||||||||||||||||||| |||| Sbjct: 62346 ttgggaacaagaagaaaaacaaaa 62369
>gb|AY696297.1| Plasmopara viticola isolate MIC 18 ATP synthase F0 subunit 9 (ATP9) gene, partial cds; NADH dehydrogenase subunit 9 (NAD9) and apocytochrome b (COB) genes, complete cds; and NADH dehydrogenase subunit 5 (NAD5) gene, partial cds; mitochondrial Length = 2528 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 atcacacaaatagtcaattt 178 |||||||||||||||||||| Sbjct: 360 atcacacaaatagtcaattt 379
>ref|NM_001024470.1| Mus musculus RIKEN cDNA 4930523C07 gene (4930523C07Rik), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 796 gaacaagaagaaaaagaaaa 815
>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0039M16 Length = 133229 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 aaaaaggtatgataggacaa 338 |||||||||||||||||||| Sbjct: 86263 aaaaaggtatgataggacaa 86244
>gb|AC150478.3| Monodelphis domestica clone VMRC6-508P4, complete sequence Length = 81497 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cacaaatagtcaatttgtta 182 |||||||||||||||||||| Sbjct: 22069 cacaaatagtcaatttgtta 22050
>dbj|AP005807.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018H10 Length = 135879 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 aaaaaggtatgataggacaa 338 |||||||||||||||||||| Sbjct: 123490 aaaaaggtatgataggacaa 123471
>gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complete sequence Length = 139145 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cacaaatagtcaatttgtta 182 |||||||||||||||||||| Sbjct: 138083 cacaaatagtcaatttgtta 138064
>gb|AC000066.1|AC000066 Homo sapiens BAC clone CTA-293F11 from 7q21-7q22, complete sequence Length = 94960 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 47415 acaagaagaaaaagaaaagg 47434
>emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons 1-50 Length = 170008 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 61524 acaagaagaaaaagaaaagg 61543
>emb|AJ131693.1|HSA131693 Homo sapiens mRNA for AKAP450 protein Length = 12465 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 2418 acaagaagaaaaagaaaagg 2437
>gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, complete sequence Length = 155730 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 125418 gaacaagaagaaaaagaaaa 125437
>gb|AF026245.1|AF026245 Homo sapiens yotiao mRNA, complete cds Length = 6018 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 2416 acaagaagaaaaagaaaagg 2435
>gb|AF083037.1|AF083037 Homo sapiens A-kinase anchoring protein AKAP350 mRNA, partial cds Length = 11318 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 1266 acaagaagaaaaagaaaagg 1285
>gb|AC005909.1|AC005909 Homo sapiens chromosome 18 BAC RPCI11-128D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137557 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 aattcaaaacatcccaatgc 543 |||||||||||||||||||| Sbjct: 39218 aattcaaaacatcccaatgc 39199
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaa 224 |||||||||||||||||||| Sbjct: 1451894 ggaacaagaagaaaaagaaa 1451913
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggaacaagaagaaaaagaaa 224 |||||||||||||||||||| Sbjct: 1606148 ggaacaagaagaaaaagaaa 1606167
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 60610 acaagaagaaaaagaaaagg 60629
>emb|CT009630.16| Mouse DNA sequence from clone RP23-12B13 on chromosome 17, complete sequence Length = 240447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 gggaacaagaagaaaaagaaaagg 227 ||||| |||||||||||||||||| Sbjct: 97079 gggaaaaagaagaaaaagaaaagg 97102
>dbj|AB249793.1| Xenopus tropicalis DNA for bitter taste receptor, complete cds, clone: Xetr-T2R25 Length = 876 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ttttatttatcatgaaaata 137 |||||||||||||||||||| Sbjct: 477 ttttatttatcatgaaaata 496
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 162 acacaaatagtcaatttgttagaacttgcttagtagtgaattgg 205 |||||| || |||||| ||| ||||||||||||| |||||||| Sbjct: 43032 acacaagtattcaattagttcgaacttgcttagtcttgaattgg 43075
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 agtcaatttgttagaacttgctta 193 ||||| |||||||||||||||||| Sbjct: 458230 agtcattttgttagaacttgctta 458253
>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b, complete sequence Length = 66087 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 162 acacaaatagtcaatttgttagaacttgcttagtagtgaattgg 205 |||||| || |||||| ||| ||||||||||||| |||||||| Sbjct: 52292 acacaagtattcaattagttcgaacttgcttagtcttgaattgg 52249
>gb|U57652.1|CEU57652 Caenorhabditis elegans FER-1 (fer-1) gene, complete cds Length = 8639 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 gaagaaaaagaaaaggctgg 231 |||||||||||||||||||| Sbjct: 5871 gaagaaaaagaaaaggctgg 5890
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold Length = 1833844 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cacaaatagtcaatttgtta 182 |||||||||||||||||||| Sbjct: 1774416 cacaaatagtcaatttgtta 1774397
>emb|AL845519.6| Mouse DNA sequence from clone RP23-295F2 on chromosome 2, complete sequence Length = 164578 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaacaagaagaaaaagaaaa 225 |||||||||||||||||||| Sbjct: 12049 gaacaagaagaaaaagaaaa 12068
>emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chromosome 2, complete sequence Length = 193797 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 23 gtggcatatgaaatggacgaaggaagaaattt 54 |||||| ||||||||||| |||||||| |||| Sbjct: 74391 gtggcagatgaaatggacaaaggaagagattt 74422
>dbj|AB019691.1| Homo sapiens mRNA for Centrosome- and Golgi-localized PKN-associated protein (CG-NAP), complete cds Length = 12278 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acaagaagaaaaagaaaagg 227 |||||||||||||||||||| Sbjct: 2282 acaagaagaaaaagaaaagg 2301 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,639,479 Number of Sequences: 3902068 Number of extensions: 7639479 Number of successful extensions: 200532 Number of sequences better than 10.0: 196 Number of HSP's better than 10.0 without gapping: 197 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 198254 Number of HSP's gapped (non-prelim): 2268 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
