Clone Name | basdh16 |
---|---|
Clone Library Name | barley_pub |
>emb|AL390774.10| Human DNA sequence from clone RP11-417B4 on chromosome 9 Contains part of the gene for a novel protein (KIAA1608), a novel gene, a LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM5) pseudogene and a phosphatidylinositol glycan, class F (PIGF) pseudogene, complete sequence Length = 197055 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tccttctggagcactttctg 67 |||||||||||||||||||| Sbjct: 101291 tccttctggagcactttctg 101272
>gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequence Length = 55519 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ccttctggagcactttctgt 68 |||||||||||||||||||| Sbjct: 48189 ccttctggagcactttctgt 48170
>emb|BX842684.4| Zebrafish DNA sequence from clone DKEY-33I22 in linkage group 20, complete sequence Length = 140982 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 aaaatacatgttttttacaagaca 136 ||||||||||||||||| |||||| Sbjct: 51542 aaaatacatgttttttataagaca 51565
>ref|XM_715419.1| Candida albicans SC5314 putative alkyl hydroperoxide reductase (CaO19_2762), mRNA Length = 531 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 acattgaaccaaaatacat 121 ||||||||||||||||||| Sbjct: 26 acattgaaccaaaatacat 44
>ref|XM_715189.1| Candida albicans SC5314 putative alkyl hydroperoxide reductase (CaO19_10278), mRNA Length = 531 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 acattgaaccaaaatacat 121 ||||||||||||||||||| Sbjct: 26 acattgaaccaaaatacat 44
>ref|XM_765899.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_29_69925_54083) partial mRNA Length = 15843 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 cttctggagcactttctgt 68 ||||||||||||||||||| Sbjct: 6744 cttctggagcactttctgt 6726
>gb|DQ009112.1| Uncultured marine bacterium clone SPOTSDEC01_5m27 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence Length = 2060 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 gagcactttctgttacccc 74 ||||||||||||||||||| Sbjct: 57 gagcactttctgttacccc 39
>emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on chromosome 6 Contains one or two novel genes, a repressor of protein-kinase (interferon-inducible double stranded RNA dependent inhibitor) (P58 repressor) (PRKRIR) pseudogene and a CpG island, complete sequence Length = 127862 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 ccaaaatacatgtttttta 129 ||||||||||||||||||| Sbjct: 99263 ccaaaatacatgtttttta 99245
>emb|AL139318.9| Human DNA sequence from clone RP11-124B17 on chromosome 13 Contains the DCT gene for dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2) (TYRP2), the 3' end of the gene for dTDP-D-glucose 4,6-dehydratase (TDPGD) and a CpG island, complete sequence Length = 160004 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 114 aaatacatgttttttacaagaca 136 ||||||||||| ||||||||||| Sbjct: 159586 aaatacatgttgtttacaagaca 159608
>emb|CR450749.7| Zebrafish DNA sequence from clone DKEY-2J6 in linkage group 5, complete sequence Length = 142889 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 aaaatacatgttttttaca 131 ||||||||||||||||||| Sbjct: 96482 aaaatacatgttttttaca 96464
>emb|AL732511.6| Zebrafish DNA sequence from clone CH211-140G4 in linkage group 19 Contains two CpG islands, complete sequence Length = 175786 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 105 attgaaccaaaatacatgttttt 127 ||||||||||||||||| ||||| Sbjct: 16796 attgaaccaaaatacatcttttt 16818
>emb|BX666060.8| Zebrafish DNA sequence from clone CH211-133N22 in linkage group 5, complete sequence Length = 180348 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 103 acattgaaccaaaatacatgttt 125 ||||||||| ||||||||||||| Sbjct: 71558 acattgaacaaaaatacatgttt 71580
>emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in linkage group 18, complete sequence Length = 152387 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 accaaaatacatgtttttt 128 ||||||||||||||||||| Sbjct: 90516 accaaaatacatgtttttt 90498
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 tccttctggagcactttctgtta 70 |||||||||||||||| |||||| Sbjct: 1484730 tccttctggagcacttgctgtta 1484708
>gb|AC122937.4| Mus musculus BAC clone RP23-24P3 from chromosome 15, complete sequence Length = 196863 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gaataaagatccttctgga 57 ||||||||||||||||||| Sbjct: 98253 gaataaagatccttctgga 98271
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 tgcgcatcagggtcgtctt 36 ||||||||||||||||||| Sbjct: 2160847 tgcgcatcagggtcgtctt 2160865
>dbj|AK173847.1| Ciona intestinalis cDNA, clone:cicl005c07, full insert sequence Length = 2488 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 agcacattgaaccaaaata 118 ||||||||||||||||||| Sbjct: 2243 agcacattgaaccaaaata 2225
>dbj|AK117063.1| Ciona intestinalis cDNA, clone:cits023m17, full insert sequence Length = 2419 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 agcacattgaaccaaaata 118 ||||||||||||||||||| Sbjct: 2341 agcacattgaaccaaaata 2323
>emb|AL935064.7| Zebrafish DNA sequence from clone CH211-153K23, complete sequence Length = 157256 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 103 acattgaaccaaaatacatgttt 125 ||||||||| ||||||||||||| Sbjct: 128891 acattgaacaaaaatacatgttt 128913
>emb|CT009486.7| Mouse DNA sequence from clone RP23-44G15 on chromosome 13, complete sequence Length = 180092 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 tcttatgaataaagatcct 51 ||||||||||||||||||| Sbjct: 38211 tcttatgaataaagatcct 38229
>emb|AL121612.5|CNS01DS1 Human chromosome 14 DNA sequence BAC R-179A9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180914 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 73 cccactgctcctaatggctctga 95 ||||||||||| ||||||||||| Sbjct: 161304 cccactgctccaaatggctctga 161282 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,256,886 Number of Sequences: 3902068 Number of extensions: 1256886 Number of successful extensions: 87450 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87400 Number of HSP's gapped (non-prelim): 50 length of query: 155 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 133 effective length of database: 17,147,199,772 effective search space: 2280577569676 effective search space used: 2280577569676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)