>DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2030

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
 Frame = +3

Query: 216  TLSFQAKIEPSFTELVWQKLEEENPEFFKA-YYVR---LMLKNQILV-----FNKLLAHQ 368
            +LS+  K+E S+ + + ++   E PEFF+  +Y R     L+N+  V     + +L A Q
Sbjct: 1329 SLSWIRKMEASYYDNIMEQQRLE-PEFFRVGFYGRKFPFFLRNKEYVCRGHDYERLEAFQ 1387

Query: 369  GRLMNKDPSGALSVTPTAPNGSDSSTLNQNTCFLQDTTSTAIPD 500
             R++++ P    +V    PN  D + L  +  +LQ    T IPD
Sbjct: 1388 QRMLSEFPQ---AVAMQHPNHPDDAILQCDAQYLQIYAVTPIPD 1428

>DOCK3_MOUSE (Q8CIQ7) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2027

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
 Frame = +3

Query: 216  TLSFQAKIEPSFTELVWQKLEEENPEFFKA-YYVR---LMLKNQILV-----FNKLLAHQ 368
            +LS+  K+E S+ + + ++   E PEFF+  +Y R     L+N+  V     + +L A Q
Sbjct: 1326 SLSWIRKMEASYYDNIIEQQRLE-PEFFRVGFYGRKFPFFLRNKEYVCRGHDYERLEAFQ 1384

Query: 369  GRLMNKDPSGALSVTPTAPNGSDSSTLNQNTCFLQDTTSTAIPD 500
             R++++ P    +V    PN  D + L  +  +LQ    T IPD
Sbjct: 1385 QRMLSEFPQ---AVAMQHPNHPDDAILQCDAQYLQIYAVTPIPD 1425

>ERP5_YEAST (P38819) Protein ERP5 precursor|
          Length = 212

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +3

Query: 300 KAYYVRLMLKNQILVFNKLLAHQGRLMNKDPSGALSVTPTAPNGSDSSTLNQNTCFLQDT 479
           K +Y  L   N ++    L   +  L  +DP  +L++T      +D   LNQ      D 
Sbjct: 32  KCFYEHLSRGNLLIGDLDLYVEKDGLFEEDPESSLTITVDETFDNDHRVLNQKNSHTGDV 91

Query: 480 TSTAI 494
           T TA+
Sbjct: 92  TFTAL 96

>VE2_HPV09 (P36780) Regulatory protein E2|
          Length = 461

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
 Frame = +3

Query: 264 WQKLEEENPEFFKAYYVRLMLKNQILVFNKLLAHQGRL------MNKDPSGALSVTPTAP 425
           W+K++  + ++F AYY    +K   + F+K  A  GR       +NKD   A   + + P
Sbjct: 146 WEKVQG-HVDYFGAYYFEGTVKTYYINFDKDAARYGRTGVWEVHVNKDIVFAPVTSSSPP 204

Query: 426 NGSDSSTLNQNTCFLQDTTSTAIPDSFLHNGSS 524
            G    T           T++ +P + +  G S
Sbjct: 205 TGDGGETSKHTLSRSGSPTTSRLPATTVPTGGS 237

>FLII_HUMAN (Q13045) Protein flightless-1 homolog|
          Length = 1269

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
 Frame = +3

Query: 216  TLSFQAKIE---PSFTELVWQKLEEENPEFFKAYYVRLMLKNQILVFNKLLAHQGR---- 374
            T S Q K E   P   E+V    ++ENP+F   +  + ++        K  A QG     
Sbjct: 1001 TFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFIIHR-----GKRKAVQGAQQPS 1055

Query: 375  LMNKDPSGALSVTPTAPNGSDSSTLNQNTCFL 470
            L     +G+   T      +DSS LN   CF+
Sbjct: 1056 LYQIRTNGSALCTRCIQINTDSSLLNSEFCFI 1087


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,587,010
Number of Sequences: 219361
Number of extensions: 1093671
Number of successful extensions: 2825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2825
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)