ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdh10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468078.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4569 Score = 137 bits (69), Expect = 4e-29 Identities = 180/217 (82%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| ||||| ||||||||||| ||||| |||| ||| |||||||| Sbjct: 2415 ttcagcagctcttcttattcagtcctgtattcgaggatttatcgctcgccgttatttctc 2474 Query: 87 agccatcagggagcagaaggctgcgttaatgatacagtccttctggagaaaacggaaggt 146 || ||||| |||||||| ||||| || |||||||||| || ||||||||||||||||| Sbjct: 2475 agttatcagagagcagaaagctgctttggtgatacagtcattgtggagaaaacggaaggt 2534 Query: 147 tgccatgcttttctagcgttacaagcaagccgctatagcaattcagtgtgcttggagaca 206 | || |||||| | | |||| ||||||| || | ||||||||||||||||||||| Sbjct: 2535 tataattcttttccaacaatacaggcaagccactgtgaaaattcagtgtgcttggagaca 2594 Query: 207 aaagcttccaagaagggagctaaggaaactcagaatg 243 || ||| ||||||| || ||||||| ||||| |||| Sbjct: 2595 gaaacttgcaagaagagaactaaggagactcaaaatg 2631
>ref|NM_195849.1| Oryza sativa (japonica cultivar-group) putative myosin heavy chain (OSJNBa0050M22.5), mRNA Length = 4806 Score = 137 bits (69), Expect = 4e-29 Identities = 180/217 (82%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| || || ||||||||||| ||||| |||| || |||||||| Sbjct: 2652 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 2711 Query: 87 agccatcagggagcagaaggctgcgttaatgatacagtccttctggagaaaacggaaggt 146 || |||| |||||||| ||||| || ||||||||||||| ||||||||||||||||| Sbjct: 2712 agttatcaaagagcagaaagctgctttggtgatacagtccttgtggagaaaacggaaggt 2771 Query: 147 tgccatgcttttctagcgttacaagcaagccgctatagcaattcagtgtgcttggagaca 206 | ||| |||||| | | |||| ||||||| || | ||||||||||||||||||||||| Sbjct: 2772 tatcattcttttccaacaatacaggcaagccactgtggcaattcagtgtgcttggagaca 2831 Query: 207 aaagcttccaagaagggagctaaggaaactcagaatg 243 || || ||||||| || ||||||| ||||| |||| Sbjct: 2832 gaaagttgcaagaagagaactaaggagactcaaaatg 2868
>dbj|AK066876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075D12, full insert sequence Length = 2491 Score = 137 bits (69), Expect = 4e-29 Identities = 180/217 (82%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| || || ||||||||||| ||||| |||| || |||||||| Sbjct: 39 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 98 Query: 87 agccatcagggagcagaaggctgcgttaatgatacagtccttctggagaaaacggaaggt 146 || |||| |||||||| ||||| || ||||||||||||| ||||||||||||||||| Sbjct: 99 agttatcaaagagcagaaagctgctttggtgatacagtccttgtggagaaaacggaaggt 158 Query: 147 tgccatgcttttctagcgttacaagcaagccgctatagcaattcagtgtgcttggagaca 206 | ||| |||||| | | |||| ||||||| || | ||||||||||||||||||||||| Sbjct: 159 tatcattcttttccaacaatacaggcaagccactgtggcaattcagtgtgcttggagaca 218 Query: 207 aaagcttccaagaagggagctaaggaaactcagaatg 243 || || ||||||| || ||||||| ||||| |||| Sbjct: 219 gaaagttgcaagaagagaactaaggagactcaaaatg 255
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 85.7 bits (43), Expect = 1e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 121 cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 180 |||||||| |||||||||||||||||| ||| |||||| | | |||| ||||||| || Sbjct: 29277 cagtccttgtggagaaaacggaaggttatcattcttttccaacaatacaggcaagccact 29336 Query: 181 atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 240 | ||||||||||||||||||||||| || || ||||||| || ||||||| ||||| | Sbjct: 29337 gtggcaattcagtgtgcttggagacagaaagttgcaagaagagaactaaggagactcaaa 29396 Query: 241 atg 243 ||| Sbjct: 29397 atg 29399 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| || || ||||||||||| ||||| |||| || |||||||| Sbjct: 28919 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 28978 Query: 87 agccatcagggagcagaaggctgcgttaatgatacag 123 || |||| |||||||| ||||| || |||||||| Sbjct: 28979 agttatcaaagagcagaaagctgctttggtgatacag 29015
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 85.7 bits (43), Expect = 1e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 121 cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 180 |||||||| |||||||||||||||||| ||| |||||| | | |||| ||||||| || Sbjct: 9395793 cagtccttgtggagaaaacggaaggttatcattcttttccaacaatacaggcaagccact 9395852 Query: 181 atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 240 | ||||||||||||||||||||||| || || ||||||| || ||||||| ||||| | Sbjct: 9395853 gtggcaattcagtgtgcttggagacagaaagttgcaagaagagaactaaggagactcaaa 9395912 Query: 241 atg 243 ||| Sbjct: 9395913 atg 9395915 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| || || ||||||||||| ||||| |||| || |||||||| Sbjct: 9395435 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 9395494 Query: 87 agccatcagggagcagaaggctgcgttaatgatacag 123 || |||| |||||||| ||||| || |||||||| Sbjct: 9395495 agttatcaaagagcagaaagctgctttggtgatacag 9395531
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 85.7 bits (43), Expect = 1e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 121 cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 180 |||||||| |||||||||||||||||| ||| |||||| | | |||| ||||||| || Sbjct: 9401832 cagtccttgtggagaaaacggaaggttatcattcttttccaacaatacaggcaagccact 9401891 Query: 181 atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 240 | ||||||||||||||||||||||| || || ||||||| || ||||||| ||||| | Sbjct: 9401892 gtggcaattcagtgtgcttggagacagaaagttgcaagaagagaactaaggagactcaaa 9401951 Query: 241 atg 243 ||| Sbjct: 9401952 atg 9401954 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| || || ||||||||||| ||||| |||| || |||||||| Sbjct: 9401474 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctc 9401533 Query: 87 agccatcagggagcagaaggctgcgttaatgatacag 123 || |||| |||||||| ||||| || |||||||| Sbjct: 9401534 agttatcaaagagcagaaagctgctttggtgatacag 9401570
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| ||||| ||||||||||| ||||| |||| ||| |||||||| Sbjct: 32925737 ttcagcagctcttcttattcagtcctgtattcgaggatttatcgctcgccgttatttctc 32925796 Query: 87 agccatcagggagcagaaggctgcgttaatgatacag 123 || ||||| |||||||| ||||| || |||||||| Sbjct: 32925797 agttatcagagagcagaaagctgctttggtgatacag 32925833 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Plus Query: 121 cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 180 ||||| || |||||||||||||||||| || |||||| | | |||| ||||||| || Sbjct: 32926105 cagtcattgtggagaaaacggaaggttataattcttttccaacaatacaggcaagccact 32926164 Query: 181 atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 240 | ||||||||||||||||||||| || ||| ||||||| || ||||||| ||||| | Sbjct: 32926165 gtgaaaattcagtgtgcttggagacagaaacttgcaagaagagaactaaggagactcaaa 32926224 Query: 241 atg 243 ||| Sbjct: 32926225 atg 32926227
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| ||||| ||||||||||| ||||| |||| ||| |||||||| Sbjct: 80478 ttcagcagctcttcttattcagtcctgtattcgaggatttatcgctcgccgttatttctc 80537 Query: 87 agccatcagggagcagaaggctgcgttaatgatacag 123 || ||||| |||||||| ||||| || |||||||| Sbjct: 80538 agttatcagagagcagaaagctgctttggtgatacag 80574 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Plus Query: 121 cagtccttctggagaaaacggaaggttgccatgcttttctagcgttacaagcaagccgct 180 ||||| || |||||||||||||||||| || |||||| | | |||| ||||||| || Sbjct: 80846 cagtcattgtggagaaaacggaaggttataattcttttccaacaatacaggcaagccact 80905 Query: 181 atagcaattcagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactcaga 240 | ||||||||||||||||||||| || ||| ||||||| || ||||||| ||||| | Sbjct: 80906 gtgaaaattcagtgtgcttggagacagaaacttgcaagaagagaactaaggagactcaaa 80965 Query: 241 atg 243 ||| Sbjct: 80966 atg 80968
>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12, complete sequence Length = 122262 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatccagtcttgtattcgagggtttattgctcaccgctatttctc 86 |||||||||||| ||||| || || ||||||||||| ||||| |||| ||| |||||||| Sbjct: 121199 ttcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccgttatttctc 121258 Query: 87 agccatcagggagcaga 103 || ||||| ||||||| Sbjct: 121259 agttatcagagagcaga 121275
>gb|AC024797.1| Caenorhabditis elegans cosmid Y48G8AR, complete sequence Length = 46975 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tgtatggaaagaagaaagata 269 ||||||||||||||||||||| Sbjct: 19036 tgtatggaaagaagaaagata 19016
>emb|Z69722.1|HSU212C1 Human DNA sequence from clone LL0XNC01-212C1 on chromosome X, complete sequence Length = 40714 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 atacagtccttctggagaaaa 138 ||||||||||||||||||||| Sbjct: 6974 atacagtccttctggagaaaa 6994
>emb|BX649529.23| Zebrafish DNA sequence from clone DKEYP-74F1 in linkage group 17, complete sequence Length = 216647 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 ctggagaaaacggaaggttgc 149 ||||||||||||||||||||| Sbjct: 16660 ctggagaaaacggaaggttgc 16640
>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a novel gene, a non-POU domain containing octamer-binding protein (Nono) pseudogene, a Sin3-associated polypeptide 18 (Sap18) pseudogene, the 5' end of a novel gene and a CpG island, complete sequence Length = 209175 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 ccaagaagggagctaaggaaactca 238 |||||||||||| |||||||||||| Sbjct: 43692 ccaagaagggagttaaggaaactca 43716
>gb|AC106722.5| Homo sapiens 3 BAC RP11-107G13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 126781 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 tgtatggaaagaagaaagataggat 273 ||||||||||||||||||| ||||| Sbjct: 87320 tgtatggaaagaagaaagaaaggat 87344
>gb|AC007736.3| Homo sapiens BAC clone RP11-15J24 from 2, complete sequence Length = 172476 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 tgattcttgtatggaaagaagaaag 266 ||||||||||||||| ||||||||| Sbjct: 106357 tgattcttgtatggacagaagaaag 106333
>gb|AY109476.1| Zea mays CL1535_1 mRNA sequence Length = 5375 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 190 cagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactca 238 |||||||| ||||| |||| |||| | ||||||||||| ||||| |||| Sbjct: 2955 cagtgtgcctggaggcaaaggcttgccagaagggagctcaggaagctca 3003
>gb|AF104924.2|AF104924 Zea mays unconventional myosin heavy chain (MYO1) mRNA, complete cds Length = 5375 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 190 cagtgtgcttggagacaaaagcttccaagaagggagctaaggaaactca 238 |||||||| ||||| |||| |||| | ||||||||||| ||||| |||| Sbjct: 2955 cagtgtgcctggaggcaaaggcttgccagaagggagctcaggaagctca 3003
>gb|AC161358.8| Mus musculus chromosome 18, clone wi1-1930A12, complete sequence Length = 42218 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 cttgtatggaaagaagaaagatag 270 ||||||||||| |||||||||||| Sbjct: 18832 cttgtatggaaggaagaaagatag 18855
>ref|NM_173310.2| Rattus norvegicus N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase (GalNAc4S6ST), mRNA Length = 4149 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 catgttcagcagctctgctt 42 |||||||||||||||||||| Sbjct: 1874 catgttcagcagctctgctt 1893
>gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome 6, complete sequence Length = 172240 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tgtatggaaagaagaaagat 268 |||||||||||||||||||| Sbjct: 167284 tgtatggaaagaagaaagat 167303
>gb|AC125144.3| Mus musculus BAC clone RP24-346C2 from chromosome 6, complete sequence Length = 171156 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tgtatggaaagaagaaagat 268 |||||||||||||||||||| Sbjct: 64096 tgtatggaaagaagaaagat 64115
>gb|AC007006.3| Homo sapiens BAC clone RP11-548P6 from 2, complete sequence Length = 112027 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ttgtatggaaagaagaaaga 267 |||||||||||||||||||| Sbjct: 54237 ttgtatggaaagaagaaaga 54218
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ttcagcagctctgcttatcc 46 |||||||||||||||||||| Sbjct: 3474669 ttcagcagctctgcttatcc 3474688 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,104,471 Number of Sequences: 3902068 Number of extensions: 4104471 Number of successful extensions: 74340 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74198 Number of HSP's gapped (non-prelim): 142 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
