Clone Name | basdg16 |
---|---|
Clone Library Name | barley_pub |
>NOLA3_ARATH (Q93XX8) H/ACA ribonucleoprotein complex subunit 3-like protein| Length = 64 Score = 76.6 bits (187), Expect = 1e-14 Identities = 35/46 (76%), Positives = 40/46 (86%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 153 KESPLG+ T+SAHPARFSPDDKY++QR LLKKRFGLLPTQ +Y Sbjct: 19 KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64
>NOP10_SCHPO (Q9P7M5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein nop10) Length = 64 Score = 66.2 bits (160), Expect = 2e-11 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 153 K SP G T+S+HPARFSPDDKY+RQRY LKKRF +L TQ PA+ Y Sbjct: 19 KVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLPAKPY 64
>NOLA3_BRARE (Q6DRH5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) Length = 64 Score = 65.5 bits (158), Expect = 3e-11 Identities = 30/42 (71%), Positives = 33/42 (78%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 141 K P G PT SAHPARFSPDDK++R R +KKRFGLL TQQP Sbjct: 19 KVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60
>NOLA3_DROME (Q9V5P6) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein dNop10) Length = 64 Score = 62.8 bits (151), Expect = 2e-10 Identities = 30/46 (65%), Positives = 35/46 (76%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 153 K + G PT SAHPARFSP+DKY+RQR +KKRFGLL TQ+P Y Sbjct: 19 KRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKPEPIY 64
>NOP10_DEBHA (Q6BQP3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 58 Score = 62.4 bits (150), Expect = 3e-10 Identities = 29/35 (82%), Positives = 31/35 (88%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQ 135 G T+SAHPARFSPDDKY+RQR LKKRFGLLPTQ Sbjct: 24 GEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58
>NOLA3_MOUSE (Q9CQS2) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 64 Score = 60.1 bits (144), Expect = 1e-09 Identities = 28/42 (66%), Positives = 32/42 (76%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 141 K P+G T SAHPARFSPDDKY+R R +KKRF +L TQQP Sbjct: 19 KFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
>NOLA3_HUMAN (Q9NPE3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 64 Score = 60.1 bits (144), Expect = 1e-09 Identities = 28/42 (66%), Positives = 32/42 (76%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 141 K P+G T SAHPARFSPDDKY+R R +KKRF +L TQQP Sbjct: 19 KFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
>NOP10_YEAST (Q6Q547) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 58 Score = 58.9 bits (141), Expect = 3e-09 Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQ 135 K + G T+SAHPARFSPDDKY+RQR LKKRFGL+P Q Sbjct: 19 KVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58
>NOP10_ASHGO (Q74Z52) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 57.4 bits (137), Expect = 8e-09 Identities = 26/38 (68%), Positives = 31/38 (81%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLP 129 K +P G T+SAHPARFSPDDKY+RQR LK+RF +LP Sbjct: 19 KVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDMLP 56
>NOLA3_CAEEL (Q9XVR8) Putative H/ACA ribonucleoprotein complex subunit 3-like| protein Length = 64 Score = 55.8 bits (133), Expect = 2e-08 Identities = 24/41 (58%), Positives = 33/41 (80%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQ 138 + +P G T +AHPARFSP+DK ++ R ++KKRFGLLPTQ+ Sbjct: 19 RTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQK 59
>NOP10_CANGA (Q6FNL3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 55.1 bits (131), Expect = 4e-08 Identities = 25/33 (75%), Positives = 28/33 (84%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKKRFGLLP 129 G T+SAHPARFSPDDKY+RQR LKKR+ LLP Sbjct: 24 GEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
>NOP10_KLULA (Q6CSZ0) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 54.7 bits (130), Expect = 5e-08 Identities = 24/30 (80%), Positives = 27/30 (90%) Frame = +1 Query: 40 TQSAHPARFSPDDKYARQRYLLKKRFGLLP 129 T+SAHPARFSPDDKY+RQR LKKR+ LLP Sbjct: 27 TKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
>NOLA3_TRYCR (Q6JZK2) H/ACA ribonucleoprotein complex subunit 3-like protein| (Ribosome biogenesis protein Nop10) Length = 63 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/41 (58%), Positives = 30/41 (73%) Frame = +1 Query: 16 KESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQ 138 K P G PT SAHPARFSPDDKY+R R +K+RF L +++ Sbjct: 18 KMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKALKSEK 58
>NOP10_SULTO (Q973G1) Ribosome biogenesis protein Nop10| Length = 56 Score = 36.2 bits (82), Expect = 0.020 Identities = 16/27 (59%), Positives = 18/27 (66%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKK 111 G PT HPARFSP DKY + R +KK Sbjct: 24 GTPTIIPHPARFSPVDKYVKYRIEIKK 50
>NOP10_PYRAE (Q8ZTY6) Ribosome biogenesis protein Nop10| Length = 72 Score = 35.8 bits (81), Expect = 0.026 Identities = 20/45 (44%), Positives = 25/45 (55%) Frame = +1 Query: 52 HPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY*STEWVLLRDL 186 HP +FSP+DKY + R L K G LP + T+ LLRDL Sbjct: 32 HPPKFSPEDKYQKYRILQKLLMGKLPIRD------ETKERLLRDL 70
>NOP10_SULSO (Q97Z78) Ribosome biogenesis protein Nop10| Length = 56 Score = 34.3 bits (77), Expect = 0.077 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKK 111 G T HP+RFSP+DKY + R LKK Sbjct: 24 GSKTVIPHPSRFSPEDKYVKYRIELKK 50
>NOP10_PYRKO (Q5JE48) Ribosome biogenesis protein Nop10| Length = 59 Score = 32.3 bits (72), Expect = 0.29 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKK 111 G T+ AHP RFSP+D Y R LK+ Sbjct: 24 GSETKVAHPPRFSPEDPYGEYRRRLKR 50
>NOP10_PYRAB (Q9V0E3) Ribosome biogenesis protein Nop10| Length = 60 Score = 32.3 bits (72), Expect = 0.29 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKK 111 G T+ AHP RFSP+D Y R LK+ Sbjct: 24 GEKTKVAHPPRFSPEDPYGEYRRRLKR 50
>NOP10_METKA (Q8TY85) Ribosome biogenesis protein Nop10| Length = 66 Score = 31.6 bits (70), Expect = 0.50 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = +1 Query: 52 HPARFSPDDKYARQRYLLKKR 114 HP RFSP+D Y + R LKKR Sbjct: 32 HPHRFSPEDPYGKYRRKLKKR 52
>PROA_PHOPR (Q6LTX2) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 418 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -1 Query: 214 HSKQHSPK*TD-LLGGPIQCFSTFVLAAGLAAIQTSSSTGNADGRTCHPGRNELGGQTAS 38 H ++H+ +D +L IQ FV AAG AA+ ++ST DG G E+ T Sbjct: 333 HMRKHNASHSDAILTNDIQSAERFVNAAGSAAVYVNASTRFTDGAQFGLGA-EVAVSTQK 391 Query: 37 AHREG 23 H G Sbjct: 392 LHARG 396
>NOP10_PYRFU (Q8U1R4) Ribosome biogenesis protein Nop10| Length = 60 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKK 111 G T+ AHP RFSP+D Y R K+ Sbjct: 24 GEKTKVAHPPRFSPEDPYGEYRRRWKR 50
>NOP10_METAC (Q8TT00) Ribosome biogenesis protein Nop10| Length = 51 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKK 111 G T A PARFSP D Y + R L KK Sbjct: 24 GGVTLPAIPARFSPQDPYGKYRRLAKK 50
>RNF26_HUMAN (Q9BY78) RING finger protein 26| Length = 433 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = +1 Query: 178 RDLFTLVNAVW-SVD*PCEERT-ITATYLAHYCSTSECNAMILW 303 ++LF+LV A+W +V P T + A +LAH S++ A++LW Sbjct: 160 QNLFSLVLALWDAVTGPLWRMTDVVAAFLAHISSSAVAMAILLW 203
>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28| Length = 110 Score = 29.3 bits (64), Expect = 2.5 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 298 LWIVLLCTMCSLCDFHLGSK 357 +W +L CT+C LC F+L +K Sbjct: 49 VWTLLTCTLCFLCAFNLENK 68
>CTL1_TORMA (Q9I9B9) Choline transporter-like protein 1| Length = 646 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +1 Query: 184 LFTLVNAVWSVD*--PCEERTITATYLAHYCSTSECNAMILWIVLLCTMCSLCDFHLGSK 357 ++ LV +W + C++ TI + +Y + + N I L +MC L +HLG+ Sbjct: 379 IYHLVGLIWISEFILACQQMTIAGAVVTYYFTRDKHNLPATPI--LASMCRLIKYHLGTV 436 Query: 358 KK 363 K Sbjct: 437 AK 438
>GR98A_DROME (Q9VB30) Putative gustatory receptor 98a| Length = 391 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 244 TATYLAHYCSTSECNAMILWIVLLCTMCSLCD 339 T + HY +T EC +L IV+ C +C+ CD Sbjct: 266 TRVAVQHYVATVEC-IKLLEIVVPCYLCTRCD 296
>T2R34_MOUSE (Q7TQB0) Putative taste receptor type 2 member 34 (T2R34)| Length = 298 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +1 Query: 226 CEERTITATYLAHYCSTSECNAMILWIV 309 CE TI +A Y C+AM++W++ Sbjct: 156 CENYTIYYKMMAFYLYYFRCHAMLMWVI 183
>NOP10_METMP (Q6LWK3) Ribosome biogenesis protein Nop10| Length = 51 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +1 Query: 55 PARFSPDDKYARQRYLLKK 111 P RFSP DKY + R LKK Sbjct: 30 PPRFSPVDKYGKYRRALKK 48
>NOP10_HALMA (Q5UX23) Ribosome biogenesis protein Nop10| Length = 60 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 31 GVPTQSAHPARFSPDDKYARQRYLLKKR 114 G ++ PA FSP+D Y R LK+R Sbjct: 30 GAEAVNSAPAPFSPEDSYGEYRRSLKRR 57
>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2067 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 11 QXRNPLSVCRRSLPTQLVSPRMTSTPV 91 Q PL + R+ P QL SP TS+PV Sbjct: 1730 QTGRPLVLSSRATPVQLPSPPCTSSPV 1756
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 11 QXRNPLSVCRRSLPTQLVSPRMTSTPV 91 Q PL + R+ P QL SP TS+PV Sbjct: 1727 QTGRPLVLSSRATPVQLPSPPCTSSPV 1753
>CQ028_HUMAN (Q8IV36) Protein C17orf28 (Down-regulated in multiple cancers-1)| Length = 788 Score = 27.3 bits (59), Expect = 9.4 Identities = 20/78 (25%), Positives = 35/78 (44%) Frame = +1 Query: 97 YLLKKRFGLLPTQQPAQKY*STEWVLLRDLFTLVNAVWSVD*PCEERTITATYLAHYCST 276 Y+ + G + QP + LL+ L T + + P E T ++ +CST Sbjct: 182 YIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLP-PAPESGSTNPWVQFFCST 240 Query: 277 SECNAMILWIVLLCTMCS 330 +A+ L+ LL T+C+ Sbjct: 241 ENRHALPLFTSLLNTVCA 258
>GR65_HUMAN (Q9BQQ3) Golgi reassembly-stacking protein 1 (Golgi| reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi peripheral membrane protein p65) (Golgi phosphoprotein 5) (GOLPH5) Length = 439 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 1 GTPPXKESPLGVPTQSAHPARFSPDD 78 GTPP PLG P A P +P+D Sbjct: 214 GTPPPSALPLGAPPPDALPPGPTPED 239 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,742,188 Number of Sequences: 219361 Number of extensions: 1019416 Number of successful extensions: 2512 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2510 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)