>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 748

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 332 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 153
           ASL  G L Y+ +L SHS     +   L  +      YY LF  + L G     L    S
Sbjct: 236 ASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNS 295

Query: 152 FI 147
            I
Sbjct: 296 SI 297

>CCSA_PINTH (P41650) Cytochrome c biogenesis protein ccsA|
          Length = 320

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 31/97 (31%), Positives = 39/97 (40%)
 Frame = -3

Query: 392 VFVTQADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYA 213
           +F+T   ILA  S +    V  +  GTL YR    S S G+ +    L   G        
Sbjct: 2   IFITLEHILAHISFSLILVVTLIYWGTLVYRIEGLSSSGGKGMIVTFLCTTG-------L 54

Query: 212 LFKGWLLLGKPPGCLCTPTSFITERSFRGLSW*SGLF 102
           L   WL  G        P S + E SF  LSW S +F
Sbjct: 55  LINRWLYSGH------LPLSNLYE-SFMFLSWSSSVF 84

>NHR71_CAEEL (Q9GTD4) Nuclear hormone receptor family member nhr-71|
          Length = 579

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 242 CAEDERG*AICRSCGMSKCIGRGAFRLRGKQPRK 343
           C  D  G   CRSC  +KCI  G  ++   QPR+
Sbjct: 53  CLIDPDGRCACRSCRFTKCIEAG-MKIGAVQPRR 85

>SPRT_VIBVY (Q7MHK4) Protein sprT|
          Length = 168

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 386 VTQADILASASSTPAFAVASL*GGTLPYRC 297
           + Q   L  A++T  FAVAS+ G T  YRC
Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129

>SPRT_VIBVU (Q8DCA5) Protein sprT|
          Length = 168

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 386 VTQADILASASSTPAFAVASL*GGTLPYRC 297
           + Q   L  A++T  FAVAS+ G T  YRC
Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129

>CLAT_PIG (P13222) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 640

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -3

Query: 332 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 153
           A+L  G L Y+ +L SHS     +   L  +      YY LF  + L G     L    S
Sbjct: 128 ANLISGVLSYKALLDSHSIPIDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQKS 187

Query: 152 FI 147
            +
Sbjct: 188 SV 189

>TTC9_HUMAN (Q92623) Tetratricopeptide repeat protein 9 (TPR repeat protein 9)|
           (Fragment)
          Length = 336

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 90  SSRGKQPGSPAKAPK*PLSDKGGGGAKTAR-RFA*KQPPFKECVIAH*SSALALKMNGAK 266
           S R   PG  +  P+ P   +GGG  + AR R A + P  +    A  +++ +   NG+ 
Sbjct: 5   SPRSASPGPASTGPRHPQVAEGGGRERAARSREAGEGPASEAAAAAAGAASGSSGENGSA 64

Query: 267 RSAEAVGC 290
               A GC
Sbjct: 65  GRQTAAGC 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,635,107
Number of Sequences: 219361
Number of extensions: 1082433
Number of successful extensions: 2432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2431
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)