ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdg09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.034
2dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.034
3dbj|AK104122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.034
4dbj|AK099314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.034
5dbj|AK071853.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.034
6gb|BC076521.1| Danio rerio zgc:92447, mRNA (cDNA clone MGC:92447... 46 0.13
7emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in... 46 0.13
8ref|NM_001002667.1| Danio rerio zgc:92447 (zgc:92447), mRNA 46 0.13
9emb|AJ313508.1|YLI313508 Yarrowia lipolytica gpr1 gene for glyox... 46 0.13
10gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, com... 46 0.13
11gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, comp... 46 0.13
12gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, comple... 46 0.13
13emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 46 0.13
14gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, co... 46 0.13
15gb|AC093734.3| Homo sapiens BAC clone RP11-16P10 from 7, complet... 42 2.1
16gb|AC132120.3| Mus musculus BAC clone RP23-479B19 from chromosom... 42 2.1
17gb|AC136621.2| Homo sapiens chromosome 16 clone RP11-481F24, com... 42 2.1
18gb|AC026802.9| Homo sapiens chromosome 16 clone CTD-2545G24, com... 42 2.1
19gb|BC039212.1| Mus musculus prominin 2, mRNA (cDNA clone MGC:311... 42 2.1
20gb|AF508942.1| Rattus norvegicus prominin-2.s1 splice variant mR... 42 2.1
21ref|NM_138857.1| Rattus norvegicus prominin 2 (Prom2), mRNA 42 2.1
22gb|AY326794.1| Chlamydomonas reinhardtii putative phosphate/phos... 42 2.1
23emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chr... 42 2.1
24gb|AC007602.6| Homo sapiens chromosome 16 clone RP11-2D4, comple... 42 2.1
25gb|BC007937.1|BC007937 Homo sapiens, clone IMAGE:4126408, mRNA 42 2.1
26gb|AC026462.5| Homo sapiens chromosome 16 clone RP11-297L17, com... 42 2.1
27gb|AC117378.8| Homo sapiens 12 BAC RP11-112B10 (Roswell Park Can... 42 2.1
28gb|AC121758.14| Homo sapiens 12 BAC RP11-74M13 (Roswell Park Can... 42 2.1
29gb|AF269062.1| Mus musculus prominin-2 mRNA, complete cds 42 2.1
30gb|AF486828.1| Rattus norvegicus testosterone-regulated prominin... 42 2.1
31emb|BX544888.2| Mouse DNA sequence from clone RP24-232N15 on chr... 42 2.1
32emb|X91119.2|HSNETEX13 Homo sapiens partial SLC6A2 gene for nore... 42 2.1
33gb|AC159234.2| Mus musculus BAC clone RP24-432D6 from chromosome... 42 2.1
34ref|NM_138750.1| Mus musculus prominin 2 (Prom2), transcript var... 42 2.1
35emb|AL772398.7| Mouse DNA sequence from clone RP23-173J23 on chr... 42 2.1
36dbj|AB022847.1| Homo sapiens mRNA for norepinephrine transporter... 42 2.1
37ref|XM_521073.1| PREDICTED: Pan troglodytes similar to RIB43A do... 40 8.3
38ref|XM_513622.1| PREDICTED: Pan troglodytes similar to Sortilin ... 40 8.3
39gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, com... 40 8.3
40ref|XM_418216.1| PREDICTED: Gallus gallus similar to GLGL782 (LO... 40 8.3
41ref|NM_002959.4| Homo sapiens sortilin 1 (SORT1), mRNA 40 8.3
42ref|NM_001031745.1| Homo sapiens RIB43A domain with coiled-coils... 40 8.3
43ref|NM_144968.1| Homo sapiens RIB43A domain with coiled-coils 1 ... 40 8.3
44ref|NM_174505.2| Bos taurus vacuolar proton-ATPase, subunit D; V... 40 8.3
45gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.3
46gb|AC055873.8| Homo sapiens chromosome 15, clone RP11-339F1, com... 40 8.3
47gb|AC076968.38| Homo sapiens 12 BAC RP11-686F15 (Roswell Park Ca... 40 8.3
48ref|XM_548144.2| PREDICTED: Canis familiaris similar to MLN 64 p... 40 8.3
49ref|XM_846381.1| PREDICTED: Canis familiaris similar to MLN 64 p... 40 8.3
50ref|XM_858705.1| PREDICTED: Canis familiaris similar to MLN 64 p... 40 8.3
51ref|XM_858684.1| PREDICTED: Canis familiaris similar to MLN 64 p... 40 8.3
52ref|XM_858659.1| PREDICTED: Canis familiaris similar to MLN 64 p... 40 8.3
53gb|BC036767.1| Homo sapiens RIB43A domain with coiled-coils 1, t... 40 8.3
54gb|AC144502.5| Medicago truncatula clone mth2-5p10, complete seq... 40 8.3
55emb|Z97054.1|HS339A18 Human DNA sequence from clone RP3-339A18 o... 40 8.3
56emb|AL390252.9| Human DNA sequence from clone RP11-297O4 on chro... 40 8.3
57emb|AL158053.14| Human DNA sequence from clone RP11-156J23 on ch... 40 8.3
58gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 40 8.3
59ref|XM_962954.1| PREDICTED: Tribolium castaneum similar to CG548... 40 8.3
60gb|AC069504.7| Homo sapiens 3 BAC RP11-263A24 (Roswell Park Canc... 40 8.3
61emb|BX294024.1|NC20H10 Neurospora crassa DNA linkage group V Cos... 40 8.3
62emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 8.3
63gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.3
64emb|AL806529.6| Mouse DNA sequence from clone RP23-234M1 on chro... 40 8.3
65gb|AC183530.3| Pan troglodytes BAC clone CH251-653K11 from chrom... 40 8.3
66emb|X98248.2|HSGP95SOR H.sapiens mRNA for sortilin 40 8.3
67dbj|AK057345.1| Homo sapiens cDNA FLJ32783 fis, clone TESTI20022... 40 8.3
68gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, co... 40 8.3
69gb|AC019294.7| Homo sapiens chromosome , clone RP11-24M17, compl... 40 8.3
70gb|DQ314862.1| Streptomyces hygroscopicus strain NRRL 2388 hygro... 40 8.3
71gb|DP000034.1| Atelerix albiventris target 116 genomic scaffold 40 8.3
72dbj|AB169289.1| Macaca fascicularis testis cDNA, clone: QtsA-186... 40 8.3
73gb|BC102305.1| Bos taurus vacuolar proton-ATPase, subunit D; V-A... 40 8.3
74dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
75gb|AC157658.2| Mus musculus BAC clone RP23-331E4 from chromosome... 40 8.3
76gb|AC091114.11| Homo sapiens chromosome 8, clone RP11-136O12, co... 40 8.3
77gb|AC154663.2| Mus musculus BAC clone RP24-283H12 from 16, compl... 40 8.3
78dbj|AP003096.3| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 8.3
79gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, comp... 40 8.3
80gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromoso... 40 8.3
81gb|BC023542.1| Homo sapiens sortilin 1, mRNA (cDNA clone MGC:151... 40 8.3
82gb|J04204.1|BOV39KD Bos taurus 32 kd acessory protein mRNA, comp... 40 8.3
83gb|AC104319.3| Homo sapiens chromosome 8 clone RP11-407G9 map 8q... 40 8.3
84dbj|AP001788.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.3 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 287      ctcggagctgctcctcccgaggct 310
                ||||||||||||||||||||||||
Sbjct: 27826489 ctcggagctgctcctcccgaggct 27826466
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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0663F07
          Length = 159046

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 287    ctcggagctgctcctcccgaggct 310
              ||||||||||||||||||||||||
Sbjct: 111822 ctcggagctgctcctcccgaggct 111799
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>dbj|AK104122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C10, full
           insert sequence
          Length = 1020

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 287 ctcggagctgctcctcccgaggct 310
           ||||||||||||||||||||||||
Sbjct: 92  ctcggagctgctcctcccgaggct 115
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>dbj|AK099314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150J15, full
           insert sequence
          Length = 1033

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 287 ctcggagctgctcctcccgaggct 310
           ||||||||||||||||||||||||
Sbjct: 98  ctcggagctgctcctcccgaggct 121
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>dbj|AK071853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114C23, full
           insert sequence
          Length = 1033

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 287 ctcggagctgctcctcccgaggct 310
           ||||||||||||||||||||||||
Sbjct: 98  ctcggagctgctcctcccgaggct 121
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>gb|BC076521.1| Danio rerio zgc:92447, mRNA (cDNA clone MGC:92447 IMAGE:7041398),
            complete cds
          Length = 4680

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 474  tctcaccttgttcatccctctgtctctctcc 504
            |||||||||||||||| |||||||| |||||
Sbjct: 1358 tctcaccttgttcatctctctgtctgtctcc 1328
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>emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in linkage group 2,
             complete sequence
          Length = 124301

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 474   tctcaccttgttcatccctctgtctctctcc 504
             |||||||||||||||| |||||||| |||||
Sbjct: 97376 tctcaccttgttcatctctctgtctgtctcc 97406
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>ref|NM_001002667.1| Danio rerio zgc:92447 (zgc:92447), mRNA
          Length = 4680

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 474  tctcaccttgttcatccctctgtctctctcc 504
            |||||||||||||||| |||||||| |||||
Sbjct: 1358 tctcaccttgttcatctctctgtctgtctcc 1328
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>emb|AJ313508.1|YLI313508 Yarrowia lipolytica gpr1 gene for glyoxylate pathway regulator
          Length = 4110

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 485 tcatccctctgtctctctccttc 507
           |||||||||||||||||||||||
Sbjct: 857 tcatccctctgtctctctccttc 879
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>gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, complete sequence
          Length = 174120

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 318    ctccgagctccctcctcctgtagctgc 344
              |||||||||||||||||||||| ||||
Sbjct: 120667 ctccgagctccctcctcctgtaactgc 120693
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>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence
          Length = 209209

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 471    ctctctcaccttgttcatccctc 493
              |||||||||||||||||||||||
Sbjct: 185511 ctctctcaccttgttcatccctc 185533
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>gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, complete sequence
          Length = 180488

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 471   ctctctcaccttgttcatccctc 493
             |||||||||||||||||||||||
Sbjct: 16870 ctctctcaccttgttcatccctc 16892
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 485     tcatccctctgtctctctccttc 507
               |||||||||||||||||||||||
Sbjct: 3167693 tcatccctctgtctctctccttc 3167715
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>gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, complete sequence
          Length = 204013

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 318   ctccgagctccctcctcctgtagctgc 344
             |||||||||||||||||||||| ||||
Sbjct: 27215 ctccgagctccctcctcctgtaactgc 27241
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>gb|AC093734.3| Homo sapiens BAC clone RP11-16P10 from 7, complete sequence
          Length = 114085

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 483   gttcatccctctgtctctctc 503
             |||||||||||||||||||||
Sbjct: 86264 gttcatccctctgtctctctc 86284
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>gb|AC132120.3| Mus musculus BAC clone RP23-479B19 from chromosome 8, complete sequence
          Length = 173226

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 488    tccctctgtctctctccttccgcag 512
              ||||| |||||||||||||||||||
Sbjct: 117183 tccctttgtctctctccttccgcag 117159
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>gb|AC136621.2| Homo sapiens chromosome 16 clone RP11-481F24, complete sequence
          Length = 186021

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 485    tcatccctctgtctctctccttccg 509
              |||||||||||||||||| ||||||
Sbjct: 118072 tcatccctctgtctctctgcttccg 118096
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>gb|AC026802.9| Homo sapiens chromosome 16 clone CTD-2545G24, complete sequence
          Length = 188923

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 485   tcatccctctgtctctctccttccg 509
             |||||||||||||||||| ||||||
Sbjct: 30030 tcatccctctgtctctctgcttccg 30006
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>gb|BC039212.1| Mus musculus prominin 2, mRNA (cDNA clone MGC:31164 IMAGE:4188940),
            complete cds
          Length = 4211

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  cctcctcctgtagctgctgcc 348
            |||||||||||||||||||||
Sbjct: 2052 cctcctcctgtagctgctgcc 2032
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>gb|AF508942.1| Rattus norvegicus prominin-2.s1 splice variant mRNA, complete cds
          Length = 3399

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  cctcctcctgtagctgctgcc 348
            |||||||||||||||||||||
Sbjct: 2077 cctcctcctgtagctgctgcc 2057
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>ref|NM_138857.1| Rattus norvegicus prominin 2 (Prom2), mRNA
          Length = 4294

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  cctcctcctgtagctgctgcc 348
            |||||||||||||||||||||
Sbjct: 2095 cctcctcctgtagctgctgcc 2075
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>gb|AY326794.1| Chlamydomonas reinhardtii putative phosphate/phosphoenolpyruvate
           translocator precursor (PPT2) mRNA, complete cds;
           nuclear gene for plastid product
          Length = 2235

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 340 gctgctgccgcccgagagcctcgcc 364
           ||||||| |||||||||||||||||
Sbjct: 948 gctgctgacgcccgagagcctcgcc 972
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>emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chromosome 11 Contains the
             Kif2b gene for kinesin family member 28, complete sequence
          Length = 231926

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 484   ttcatccctctgtctctctccttcc 508
             ||||||||||||||||||| |||||
Sbjct: 96331 ttcatccctctgtctctcttcttcc 96307
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>gb|AC007602.6| Homo sapiens chromosome 16 clone RP11-2D4, complete sequence
          Length = 167094

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 485   tcatccctctgtctctctccttccg 509
             |||||||||||||||||| ||||||
Sbjct: 96477 tcatccctctgtctctctgcttccg 96453
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>gb|BC007937.1|BC007937 Homo sapiens, clone IMAGE:4126408, mRNA
          Length = 3399

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 485  tcatccctctgtctctctccttccg 509
            |||||||||||||||||| ||||||
Sbjct: 2956 tcatccctctgtctctctgcttccg 2980
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>gb|AC026462.5| Homo sapiens chromosome 16 clone RP11-297L17, complete sequence
          Length = 179640

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 487    atccctctgtctctctccttc 507
              |||||||||||||||||||||
Sbjct: 130166 atccctctgtctctctccttc 130146
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>gb|AC117378.8| Homo sapiens 12 BAC RP11-112B10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 110459

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 488    tccctctgtctctctccttcc 508
              |||||||||||||||||||||
Sbjct: 108991 tccctctgtctctctccttcc 108971
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>gb|AC121758.14| Homo sapiens 12 BAC RP11-74M13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 130479

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 488    tccctctgtctctctccttcc 508
              |||||||||||||||||||||
Sbjct: 129943 tccctctgtctctctccttcc 129963
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>gb|AF269062.1| Mus musculus prominin-2 mRNA, complete cds
          Length = 2828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  cctcctcctgtagctgctgcc 348
            |||||||||||||||||||||
Sbjct: 2134 cctcctcctgtagctgctgcc 2114
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>gb|AF486828.1| Rattus norvegicus testosterone-regulated prominin-related protein
            (Trprp) mRNA, complete cds
          Length = 4294

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  cctcctcctgtagctgctgcc 348
            |||||||||||||||||||||
Sbjct: 2095 cctcctcctgtagctgctgcc 2075
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>emb|BX544888.2| Mouse DNA sequence from clone RP24-232N15 on chromosome 4, complete
            sequence
          Length = 68939

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 480  cttgttcatccctctgtctct 500
            |||||||||||||||||||||
Sbjct: 9502 cttgttcatccctctgtctct 9482
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>emb|X91119.2|HSNETEX13 Homo sapiens partial SLC6A2 gene for norepinephrine transporter, exon
            13-15
          Length = 4532

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 485  tcatccctctgtctctctccttccg 509
            |||||||||||||||||| ||||||
Sbjct: 4358 tcatccctctgtctctctgcttccg 4382
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>gb|AC159234.2| Mus musculus BAC clone RP24-432D6 from chromosome 12, complete sequence
          Length = 152905

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    accactgccatggcctcctcc 81
             |||||||||||||||||||||
Sbjct: 53944 accactgccatggcctcctcc 53964
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>ref|NM_138750.1| Mus musculus prominin 2 (Prom2), transcript variant 1, mRNA
          Length = 2828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  cctcctcctgtagctgctgcc 348
            |||||||||||||||||||||
Sbjct: 2134 cctcctcctgtagctgctgcc 2114
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>emb|AL772398.7| Mouse DNA sequence from clone RP23-173J23 on chromosome 2, complete
              sequence
          Length = 200773

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 484    ttcatccctctgtctctctcc 504
              |||||||||||||||||||||
Sbjct: 169916 ttcatccctctgtctctctcc 169896
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>dbj|AB022847.1| Homo sapiens mRNA for norepinephrine transporter isoform 2, partial
           cds
          Length = 1028

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 485 tcatccctctgtctctctccttccg 509
           |||||||||||||||||| ||||||
Sbjct: 937 tcatccctctgtctctctgcttccg 961
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>ref|XM_521073.1| PREDICTED: Pan troglodytes similar to RIB43A domain with
           coiled-coils 1 (LOC465648), mRNA
          Length = 1200

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 gcaggagcaacagcaagcca 528
           ||||||||||||||||||||
Sbjct: 423 gcaggagcaacagcaagcca 442
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>ref|XM_513622.1| PREDICTED: Pan troglodytes similar to Sortilin precursor
           (Glycoprotein 95) (Gp95) (Neurotensin receptor 3) (NT3)
           (100 kDa NT receptor) (LOC457091), mRNA
          Length = 626

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 328 cctcctcctgtagctgctgccgcc 351
           |||||||||| |||||||||||||
Sbjct: 77  cctcctcctgcagctgctgccgcc 100
to top
>gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, complete sequence
          Length = 197906

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 312    ccccagctccgagctccctcctcc 335
              |||||||||| |||||||||||||
Sbjct: 136653 ccccagctcccagctccctcctcc 136676
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>ref|XM_418216.1| PREDICTED: Gallus gallus similar to GLGL782 (LOC420096), mRNA
          Length = 1746

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 215 cctccatcccatcggcctca 234
           ||||||||||||||||||||
Sbjct: 154 cctccatcccatcggcctca 135
to top
>ref|NM_002959.4| Homo sapiens sortilin 1 (SORT1), mRNA
          Length = 7018

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 328 cctcctcctgtagctgctgccgcc 351
           |||||||||| |||||||||||||
Sbjct: 112 cctcctcctgcagctgctgccgcc 135
to top
>ref|NM_001031745.1| Homo sapiens RIB43A domain with coiled-coils 1 (RIBC1), transcript
           variant 1, mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 gcaggagcaacagcaagcca 528
           ||||||||||||||||||||
Sbjct: 657 gcaggagcaacagcaagcca 676
to top
>ref|NM_144968.1| Homo sapiens RIB43A domain with coiled-coils 1 (RIBC1), transcript
           variant 2, mRNA
          Length = 1949

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 gcaggagcaacagcaagcca 528
           ||||||||||||||||||||
Sbjct: 708 gcaggagcaacagcaagcca 727
to top
>ref|NM_174505.2| Bos taurus vacuolar proton-ATPase, subunit D; V-ATPase, subunit D
            (ATP6D), mRNA
          Length = 1538

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 351  ccgagagcctcgcccaacgccaccgggc 378
            ||||| || |||||||||||||||||||
Sbjct: 1052 ccgagtgcatcgcccaacgccaccgggc 1079
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 40       ccatctcccatggctttggt 59
                ||||||||||||||||||||
Sbjct: 11126294 ccatctcccatggctttggt 11126313
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>gb|AC055873.8| Homo sapiens chromosome 15, clone RP11-339F1, complete sequence
          Length = 194765

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    tccctctgtctctctccttc 507
              ||||||||||||||||||||
Sbjct: 170124 tccctctgtctctctccttc 170105
to top
>gb|AC076968.38| Homo sapiens 12 BAC RP11-686F15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 203038

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 477   caccttgttcatccctctgtctct 500
             ||||||||||||||| ||||||||
Sbjct: 71668 caccttgttcatccccctgtctct 71645
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>ref|XM_548144.2| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related
           lipid transfer protein 3) (StARD3) (START
           domain-containing protein 3) (CAB1 protein), transcript
           variant 1 (LOC491024), mRNA
          Length = 1444

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  caccactgccatggcctcct 79
           ||||||||||||||||||||
Sbjct: 849 caccactgccatggcctcct 830
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>ref|XM_846381.1| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related
           lipid transfer protein 3) (StARD3) (START
           domain-containing protein 3) (CAB1 protein), transcript
           variant 2 (LOC491024), mRNA
          Length = 1492

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  caccactgccatggcctcct 79
           ||||||||||||||||||||
Sbjct: 897 caccactgccatggcctcct 878
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>ref|XM_858705.1| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related
           lipid transfer protein 3) (StARD3) (START
           domain-containing protein 3) (CAB1 protein), transcript
           variant 5 (LOC491024), mRNA
          Length = 1393

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  caccactgccatggcctcct 79
           ||||||||||||||||||||
Sbjct: 798 caccactgccatggcctcct 779
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>ref|XM_858684.1| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related
           lipid transfer protein 3) (StARD3) (START
           domain-containing protein 3) (CAB1 protein), transcript
           variant 4 (LOC491024), mRNA
          Length = 1342

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  caccactgccatggcctcct 79
           ||||||||||||||||||||
Sbjct: 747 caccactgccatggcctcct 728
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>ref|XM_858659.1| PREDICTED: Canis familiaris similar to MLN 64 protein (StAR-related
           lipid transfer protein 3) (StARD3) (START
           domain-containing protein 3) (CAB1 protein), transcript
           variant 3 (LOC491024), mRNA
          Length = 1510

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  caccactgccatggcctcct 79
           ||||||||||||||||||||
Sbjct: 915 caccactgccatggcctcct 896
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>gb|BC036767.1| Homo sapiens RIB43A domain with coiled-coils 1, transcript variant
           1, mRNA (cDNA clone MGC:46233 IMAGE:5744127), complete
           cds
          Length = 1500

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 gcaggagcaacagcaagcca 528
           ||||||||||||||||||||
Sbjct: 657 gcaggagcaacagcaagcca 676
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>gb|AC144502.5| Medicago truncatula clone mth2-5p10, complete sequence
          Length = 91507

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   tccctctgtctctctccttc 507
             ||||||||||||||||||||
Sbjct: 29318 tccctctgtctctctccttc 29299
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>emb|Z97054.1|HS339A18 Human DNA sequence from clone RP3-339A18 on chromosome Xp11.1-11.4
             Contains the 5' end of the SMC1L1 gene for SMC1 structural
             maintenance of chromosomes 1-like 1 (yeast), a novel
             RIB43A domain containing protein (FLJ32783), the HADH2
             gene for hydroxyacyl-Coenzyme A dehydrogenase type II, a
             novel pseudogene (FLJ20516), the 3' end of the gene for
             upstream regulatory element binding protein 1 (UREB1), a
             novel gene and three CpG islands, complete sequence
          Length = 132805

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 509   gcaggagcaacagcaagcca 528
             ||||||||||||||||||||
Sbjct: 24776 gcaggagcaacagcaagcca 24795
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>emb|AL390252.9| Human DNA sequence from clone RP11-297O4 on chromosome 1 Contains the
              CELSR2 gene for cadherin, EGF LAG seven-pass G-type
              receptor 2 (flamingo homolog, Drosophila), the gene for
              differential display and activated by p53 (DDA3), the gene
              for novel protein similar to Myosin-binding protein H
              (MyBP-H) (H-protein) (LOC343263), the SORT1 gene for
              sortilin 1 and the 3' end of the PSMA5 gene for proteasome
              (prosome, macropain) subunit, alpha type, 5, complete
              sequence
          Length = 169241

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 328    cctcctcctgtagctgctgccgcc 351
              |||||||||| |||||||||||||
Sbjct: 151080 cctcctcctgcagctgctgccgcc 151057
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>emb|AL158053.14| Human DNA sequence from clone RP11-156J23 on chromosome Xq21.2-21.33
              Contains a discs, large homolog 7 (Drosophila) (DLG7)
              pseudogene, complete sequence
          Length = 177722

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    tccctctgtctctctccttc 507
              ||||||||||||||||||||
Sbjct: 107520 tccctctgtctctctccttc 107539
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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   ccatctcccatggctttggt 59
            ||||||||||||||||||||
Sbjct: 6825 ccatctcccatggctttggt 6806
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>ref|XM_962954.1| PREDICTED: Tribolium castaneum similar to CG5486-PA, isoform A
            (LOC656421), mRNA
          Length = 3924

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   cagctcctcgcgcccatctc 46
            ||||||||||||||||||||
Sbjct: 3768 cagctcctcgcgcccatctc 3749
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>gb|AC069504.7| Homo sapiens 3 BAC RP11-263A24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39624

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   cctcctcctgtagctgctgc 347
             ||||||||||||||||||||
Sbjct: 17865 cctcctcctgtagctgctgc 17846
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>emb|BX294024.1|NC20H10 Neurospora crassa DNA linkage group V Cosmid contig 20H10
          Length = 96283

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   cccgtttcacctctctctca 478
             ||||||||||||||||||||
Sbjct: 61151 cccgtttcacctctctctca 61132
to top
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    catcggcctcatcggctgga 243
              ||||||||||||||||||||
Sbjct: 149680 catcggcctcatcggctgga 149661
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>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ccatctcccatggctttggt 59
             ||||||||||||||||||||
Sbjct: 39651 ccatctcccatggctttggt 39670
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>emb|AL806529.6| Mouse DNA sequence from clone RP23-234M1 on chromosome 11 Contains the
             3' end of the Nxn gene for nucleoredoxin, complete
             sequence
          Length = 74841

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   catcccctgcatccctcctc 451
             ||||||||||||||||||||
Sbjct: 17274 catcccctgcatccctcctc 17255
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>gb|AC183530.3| Pan troglodytes BAC clone CH251-653K11 from chromosome 1, complete
             sequence
          Length = 198127

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 328   cctcctcctgtagctgctgccgcc 351
             |||||||||| |||||||||||||
Sbjct: 95580 cctcctcctgcagctgctgccgcc 95557
to top
>emb|X98248.2|HSGP95SOR H.sapiens mRNA for sortilin
          Length = 4975

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 328 cctcctcctgtagctgctgccgcc 351
           |||||||||| |||||||||||||
Sbjct: 123 cctcctcctgcagctgctgccgcc 146
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>dbj|AK057345.1| Homo sapiens cDNA FLJ32783 fis, clone TESTI2002223, weakly similar
           to Chlamydomonas reinhardtii strain 1132D- flagellar
           protofilament ribbon protein (RIB43a) mRNA
          Length = 1949

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 gcaggagcaacagcaagcca 528
           ||||||||||||||||||||
Sbjct: 708 gcaggagcaacagcaagcca 727
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>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence
          Length = 180202

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     tcccatggctttggtcacca 64
              ||||||||||||||||||||
Sbjct: 127092 tcccatggctttggtcacca 127111
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>gb|AC019294.7| Homo sapiens chromosome , clone RP11-24M17, complete sequence
          Length = 164310

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tcccatggctttggtcacca 64
             ||||||||||||||||||||
Sbjct: 39291 tcccatggctttggtcacca 39310
to top
>gb|DQ314862.1| Streptomyces hygroscopicus strain NRRL 2388 hygromycin A biosynthetic
            gene cluster, complete sequence
          Length = 39151

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  cgcgccgtacttcaccacga 198
            ||||||||||||||||||||
Sbjct: 1651 cgcgccgtacttcaccacga 1670
to top
>gb|DP000034.1| Atelerix albiventris target 116 genomic scaffold
          Length = 230282

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    tccctctgtctctctccttc 507
              ||||||||||||||||||||
Sbjct: 210431 tccctctgtctctctccttc 210412
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>dbj|AB169289.1| Macaca fascicularis testis cDNA, clone: QtsA-18671, similar to
           human hypothetical protein FLJ32783 (FLJ32783), mRNA,
           RefSeq: NM_144968.1
          Length = 1625

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 gcaggagcaacagcaagcca 528
           ||||||||||||||||||||
Sbjct: 823 gcaggagcaacagcaagcca 842
to top
>gb|BC102305.1| Bos taurus vacuolar proton-ATPase, subunit D; V-ATPase, subunit D,
            mRNA (cDNA clone MGC:127302 IMAGE:7949023), complete cds
          Length = 1579

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 351  ccgagagcctcgcccaacgccaccgggc 378
            ||||| || |||||||||||||||||||
Sbjct: 1078 ccgagtgcatcgcccaacgccaccgggc 1105
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 40       ccatctcccatggctttggt 59
                ||||||||||||||||||||
Sbjct: 11123057 ccatctcccatggctttggt 11123076
to top
>gb|AC157658.2| Mus musculus BAC clone RP23-331E4 from chromosome 12, complete sequence
          Length = 203717

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 481    ttgttcatccctctgtctct 500
              ||||||||||||||||||||
Sbjct: 102675 ttgttcatccctctgtctct 102694
to top
>gb|AC091114.11| Homo sapiens chromosome 8, clone RP11-136O12, complete sequence
          Length = 182291

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    tccctctgtctctctccttc 507
              ||||||||||||||||||||
Sbjct: 120808 tccctctgtctctctccttc 120789
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>gb|AC154663.2| Mus musculus BAC clone RP24-283H12 from 16, complete sequence
          Length = 177341

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   tccctctgtctctctccttc 507
             ||||||||||||||||||||
Sbjct: 70740 tccctctgtctctctccttc 70721
to top
>dbj|AP003096.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2007L18, complete
              sequence
          Length = 174605

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    tccctctgtctctctccttc 507
              ||||||||||||||||||||
Sbjct: 103540 tccctctgtctctctccttc 103559
to top
>gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, complete sequence
          Length = 158957

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   gcctcggagctgctcctccc 304
             ||||||||||||||||||||
Sbjct: 84792 gcctcggagctgctcctccc 84773
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>gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromosome unknown, complete
              sequence
          Length = 237526

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     ctttggtcaccactgccatg 72
              ||||||||||||||||||||
Sbjct: 234869 ctttggtcaccactgccatg 234850
to top
>gb|BC023542.1| Homo sapiens sortilin 1, mRNA (cDNA clone MGC:15104 IMAGE:4123836),
           complete cds
          Length = 2679

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 328 cctcctcctgtagctgctgccgcc 351
           |||||||||| |||||||||||||
Sbjct: 112 cctcctcctgcagctgctgccgcc 135
to top
>gb|J04204.1|BOV39KD Bos taurus 32 kd acessory protein mRNA, complete cds
          Length = 1538

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 351  ccgagagcctcgcccaacgccaccgggc 378
            ||||| || |||||||||||||||||||
Sbjct: 1052 ccgagtgcatcgcccaacgccaccgggc 1079
to top
>gb|AC104319.3| Homo sapiens chromosome 8 clone RP11-407G9 map 8q24.2, complete sequence
          Length = 216749

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    tccctctgtctctctccttc 507
              ||||||||||||||||||||
Sbjct: 150919 tccctctgtctctctccttc 150900
to top
>dbj|AP001788.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-259D17, complete
              sequence
          Length = 188250

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    tccctctgtctctctccttc 507
              ||||||||||||||||||||
Sbjct: 168589 tccctctgtctctctccttc 168608


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,804,391
Number of Sequences: 3902068
Number of extensions: 4804391
Number of successful extensions: 106182
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105910
Number of HSP's gapped (non-prelim): 272
length of query: 610
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 587
effective length of database: 17,143,297,704
effective search space: 10063115752248
effective search space used: 10063115752248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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