Clone Name	basdg01
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	80	4e-15
2	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	67	3e-11
3	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	65	9e-11
4	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	65	9e-11
5	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	65	1e-10
6	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	64	2e-10
7	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	63	4e-10
8	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	63	4e-10
9	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	61	1e-09
10	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	61	1e-09
11	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	60	2e-09
12	RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA	54	3e-07
13	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	53	4e-07
14	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	52	1e-06
15	MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash...	51	1e-06
16	MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa...	51	1e-06
17	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	49	9e-06
18	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	49	9e-06
19	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	49	9e-06
20	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	49	9e-06
21	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	48	1e-05
22	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	48	1e-05
23	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	47	2e-05
24	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	47	2e-05
25	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	47	2e-05
26	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	47	2e-05
27	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	47	3e-05
28	PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi...	46	4e-05
29	PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi...	46	4e-05
30	PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi...	46	4e-05
31	PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin...	46	4e-05
32	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	46	4e-05
33	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	46	4e-05
34	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	46	4e-05
35	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	46	6e-05
36	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	46	6e-05
37	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	46	6e-05
38	RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho...	46	6e-05
39	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	45	7e-05
40	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	45	7e-05
41	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	45	7e-05
42	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	45	7e-05
43	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	45	7e-05
44	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	45	1e-04
45	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	45	1e-04
46	RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ...	45	1e-04
47	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	45	1e-04
48	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	45	1e-04
49	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	45	1e-04
50	ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (...	45	1e-04
51	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	45	1e-04
52	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	45	1e-04
53	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	45	1e-04
54	MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote...	44	2e-04
55	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	44	2e-04
56	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	44	2e-04
57	SXL_DROSU (Q24668) Protein sex-lethal	44	2e-04
58	SXL_DROME (P19339) Protein sex-lethal	44	2e-04
59	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	44	2e-04
60	SXL_MUSDO (O17310) Sex-lethal homolog	44	2e-04
61	BOLL_MACFA (Q8WP23) Protein boule-like	44	3e-04
62	BOLL_HUMAN (Q8N9W6) Protein boule-like	44	3e-04
63	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	44	3e-04
64	FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ...	44	3e-04
65	BOLL_MOUSE (Q924M5) Protein boule-like	43	4e-04
66	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	43	4e-04
67	RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2	43	4e-04
68	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	43	4e-04
69	SXL_CHRRU (O97018) Sex-lethal homolog	43	5e-04
70	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	43	5e-04
71	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	43	5e-04
72	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	43	5e-04
73	BOULE_DROME (Q24207) Protein boule	43	5e-04
74	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	43	5e-04
75	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	42	6e-04
76	RSD1_SCHPO (O13845) RNA-binding protein rsd1	42	6e-04
77	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	42	6e-04
78	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	42	6e-04
79	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	42	6e-04
80	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	42	6e-04
81	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	42	8e-04
82	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	42	8e-04
83	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	42	8e-04
84	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	42	8e-04
85	ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (...	42	8e-04
86	SCE3_SCHPO (O14369) Probable RNA-binding protein sce3	42	0.001
87	A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1	42	0.001
88	A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1	42	0.001
89	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	41	0.001
90	ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ...	41	0.001
91	SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)	41	0.001
92	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	41	0.001
93	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	41	0.001
94	HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ...	41	0.002
95	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	41	0.002
96	RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F...	41	0.002
97	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	40	0.002
98	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	40	0.002
99	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	40	0.002
100	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	40	0.002
101	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	40	0.002
102	PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	40	0.002
103	PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5....	40	0.002
104	RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif pro...	40	0.002
105	RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h...	40	0.003
106	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	40	0.003
107	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	40	0.003
108	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	40	0.003
109	MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos...	40	0.003
110	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	40	0.003
111	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	40	0.003
112	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	40	0.003
113	YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 i...	40	0.004
114	IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H ...	40	0.004
115	IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H ...	40	0.004
116	YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 i...	40	0.004
117	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	39	0.005
118	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	39	0.005
119	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	39	0.005
120	YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i...	39	0.005
121	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	39	0.005
122	RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h...	39	0.005
123	RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15	39	0.007
124	GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)	39	0.007
125	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	39	0.009
126	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	39	0.009
127	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	39	0.009
128	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	39	0.009
129	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	39	0.009
130	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	39	0.009
131	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	39	0.009
132	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	39	0.009
133	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	39	0.009
134	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	39	0.009
135	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	39	0.009
136	MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos...	38	0.012
137	PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6...	38	0.012
138	DAZ1_CAEEL (Q20870) DAZ protein 1	38	0.012
139	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	38	0.012
140	GAR2_SCHPO (P41891) Protein gar2	38	0.012
141	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	38	0.012
142	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	38	0.012
143	MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos...	38	0.015
144	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	38	0.015
145	MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote...	38	0.015
146	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	38	0.015
147	ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ...	38	0.015
148	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	37	0.020
149	TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)	37	0.020
150	RB97D_DROME (Q02926) Ribonucleoprotein RB97D	37	0.020
151	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	37	0.020
152	TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)	37	0.020
153	NOP12_SCHPO (O13741) Nucleolar protein 12	37	0.026
154	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	37	0.026
155	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	37	0.026
156	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	37	0.026
157	PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	37	0.034
158	RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h...	37	0.034
159	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	37	0.034
160	SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp...	36	0.045
161	ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P...	36	0.045
162	IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN...	36	0.045
163	SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli...	36	0.045
164	SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp...	36	0.045
165	SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp...	36	0.045
166	SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp...	36	0.045
167	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	36	0.045
168	NOP12_YEAST (Q08208) Nucleolar protein 12	36	0.059
169	IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f...	36	0.059
170	MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos...	36	0.059
171	RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre...	35	0.077
172	ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)	35	0.077
173	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	35	0.077
174	ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)	35	0.077
175	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	35	0.077
176	YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4	35	0.077
177	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	35	0.077
178	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	35	0.10
179	NOP12_ASHGO (Q75BJ7) Nucleolar protein 12	35	0.10
180	NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2	35	0.10
181	NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO...	35	0.10
182	MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote...	35	0.10
183	RNP24_SCHPO (Q09100) RNA-binding protein rnp24	35	0.13
184	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	35	0.13
185	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	35	0.13
186	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	35	0.13
187	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	35	0.13
188	NOP12_KLULA (Q6CKV6) Nucleolar protein 12	35	0.13
189	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	34	0.17
190	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	34	0.17
191	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	34	0.17
192	YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12	34	0.17
193	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	34	0.17
194	RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interact...	34	0.22
195	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	34	0.22
196	SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold atta...	34	0.22
197	HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hn...	34	0.22
198	RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interact...	34	0.22
199	RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interact...	33	0.29
200	RAVR2_MOUSE (Q7TPD6) Protein raver-2	33	0.29
201	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	33	0.29
202	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	33	0.29
203	HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2...	33	0.29
204	RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interact...	33	0.38
205	RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif pro...	33	0.38
206	RAVR2_HUMAN (Q9HCJ3) Protein raver-2	33	0.38
207	NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k...	33	0.38
208	NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k...	33	0.38
209	NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2	33	0.38
210	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	33	0.38
211	PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein	33	0.38
212	NUCL_MESAU (P08199) Nucleolin (Protein C23)	33	0.50
213	FCA_ARATH (O04425) Flowering time control protein FCA	33	0.50
214	PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein	33	0.50
215	IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s...	33	0.50
216	IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s...	33	0.50
217	TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein	33	0.50
218	DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1	33	0.50
219	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	32	0.65
220	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	32	0.65
221	DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3	32	0.65
222	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	32	0.65
223	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	32	0.65
224	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	32	0.65
225	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	32	0.65
226	DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2	32	0.65
227	DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1	32	0.65
228	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	32	0.65
229	DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding prote...	32	0.65
230	DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4	32	0.65
231	SGN1_YEAST (P40561) RNA-binding protein SGN1	32	0.65
232	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	32	0.85
233	POF_DROME (Q9W123) Protein painting of fourth (Zeste-interacting...	32	0.85
234	ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu...	32	0.85
235	YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i...	32	0.85
236	MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phos...	32	0.85
237	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	32	0.85
238	PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein	32	1.1
239	IF34_SCHPO (P78795) Probable eukaryotic translation initiation f...	32	1.1
240	CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2	32	1.1
241	TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)	32	1.1
242	DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote...	32	1.1
243	NUCL_RAT (P13383) Nucleolin (Protein C23)	31	1.4
244	ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula...	31	1.4
245	ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu...	31	1.4
246	TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)	31	1.4
247	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	31	1.4
248	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	31	1.9
249	ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu...	31	1.9
250	TRA2_DROVI (O02008) Transformer-2 sex-determining protein	31	1.9
251	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	31	1.9
252	TRA2_DROME (P19018) Transformer-2 sex-determining protein	30	2.5
253	PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kD...	30	2.5
254	PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kD...	30	2.5
255	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	30	2.5
256	NUCL_XENLA (P20397) Nucleolin (Protein C23)	30	2.5
257	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	30	2.5
258	SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9	30	2.5
259	SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr...	30	2.5
260	SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9	30	2.5
261	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	30	2.5
262	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	30	3.2
263	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	30	3.2
264	YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c...	30	3.2
265	NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2	30	3.2
266	RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif p...	30	3.2
267	CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity fa...	30	4.2
268	RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro...	29	5.5
269	RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p...	29	5.5
270	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	29	5.5
271	CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity fa...	29	5.5
272	CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity fa...	29	5.5
273	CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity fa...	29	5.5
274	RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro...	29	5.5
275	RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p...	29	5.5
276	RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif pro...	29	5.5
277	RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro...	29	5.5
278	CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity fa...	29	5.5
279	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	29	5.5
280	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	29	5.5
281	RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro...	29	5.5
282	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	29	5.5
283	RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro...	29	5.5
284	SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1	29	7.2
285	YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i...	29	7.2
286	RAVR1_RAT (Q5XI28) Protein raver-1	29	7.2
287	RAVR1_MOUSE (Q9CW46) Protein raver-1	29	7.2
288	KSGA_XANCP (Q8PCE3) Dimethyladenosine transferase (EC 2.1.1.-) (...	29	7.2
289	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	29	7.2
290	G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protei...	29	7.2
291	G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protei...	29	7.2
292	SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1	29	7.2
293	SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1	29	7.2
294	SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pr...	29	7.2
295	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	29	7.2
296	SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1	29	7.2
297	SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1	28	9.4
298	SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-lik...	28	9.4
299	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	28	9.4
300	NRCAM_RAT (P97686) Neuronal cell adhesion molecule precursor (Nr...	28	9.4
301	R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab po...	28	9.4

---

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 34/56 (60%), Positives = 49/56 (87%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           E GR+YVGNLP++ T+++L+  F+EAG+V +V+I+YD++TDRSRGFAFVTM + EE
Sbjct: 112 EGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           P ++YV NL +  T+  L  AF++       ++IYD+ + RSRGF F+T ++AE
Sbjct: 216 PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAE 269

---

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 29/53 (54%), Positives = 41/53 (77%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +++VGNLP++  +A L   F  AG+V+ V++IYDK+T RSRGF FVTM+T EE
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEE 140



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           R+YVGNL +      L   FSE G+V D +++YD+ + RSRGF FVT ++++E
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKE 260

---

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 29/53 (54%), Positives = 41/53 (77%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +I+VGNLP++  +A L   F  AG+V+ V++IYDK+T RSRGF FVTM++ EE
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140



 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           R+YVGNL +      L   FSE G V D +++YD+ + RSRGF FVT ++AEE
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 241

---

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 28/53 (52%), Positives = 41/53 (77%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +++VGNLP++  +A L   F  AG+V+ V++IYDK++ RSRGF FVTM+T EE
Sbjct: 89  KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEE 141



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           R+YVGNL +      L   FSE G+V D +++YD+ + RSRGF FVT ++A+E
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKE 261

---

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 28/53 (52%), Positives = 40/53 (75%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +++VGNLP+   +A+L   F  AG+V+ V++IYDKIT RSRGF FVTM++  E
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSE 144



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           R+YVGNL +      L + FSE G V + ++IYD+ + RS+GF FVT  +++E
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

---

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 28/53 (52%), Positives = 40/53 (75%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +++VGNL +   +A+L   F  AG+V+ V++IYDK+T RSRGF FVTM+TA E
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAE 152



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 22/53 (41%), Positives = 36/53 (67%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           R+YVGNL +      L   F+E G V + ++IYD+ + RS+GF FVT+++++E
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQE 310

---

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 28/56 (50%), Positives = 39/56 (69%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           E  +++VGNLPY   + +L   F  AG V+  ++IY++ TDRSRGF FVTM+T EE
Sbjct: 53  EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 108



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +3

Query: 282 PRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P   P    EP  R+YVGNLP+    + L   FSE G V   +++ D+ T RSRGF FVT
Sbjct: 137 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 196

Query: 459 MATAEE 476
           M++  E
Sbjct: 197 MSSESE 202

---

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 28/56 (50%), Positives = 39/56 (69%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           E  +++VGNLPY   +  L   F +AG V+  ++IY++ TDRSRGF FVTM+T EE
Sbjct: 95  EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 150



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 28/65 (43%), Positives = 38/65 (58%)
 Frame = +3

Query: 282 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 461
           P   P   Q   RIYVGN+P+    A L   FSE G V   ++++D+ + RSRGF FVTM
Sbjct: 180 PERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTM 239

Query: 462 ATAEE 476
           ++  E
Sbjct: 240 SSEAE 244

---

>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 30/65 (46%), Positives = 39/65 (60%)
 Frame = +3

Query: 282 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 461
           P   P   ++  RIYVGN+P+    A L   FSE G V   +++YD+ T RSRGF FVTM
Sbjct: 219 PERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTM 278

Query: 462 ATAEE 476
           A+  E
Sbjct: 279 ASEAE 283



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/56 (48%), Positives = 39/56 (69%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           E  +++VGNLPY   +  L   F +AG V+  ++IY++ TD+SRGF FVTM+T EE
Sbjct: 134 EDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEE 189

---

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 28/53 (52%), Positives = 40/53 (75%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +I+VGNL ++  +A L   F  AG+V+ V++IYDK+T RSRGF FVTM++ EE
Sbjct: 88  KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140



 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           R+YVGNL +      L   FSE G V D +++YD+ + RSRGF FVT ++AEE
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 247

---

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 28/65 (43%), Positives = 39/65 (60%)
 Frame = +3

Query: 282 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 461
           P   P + +   R+YVGNLP+      L   FSE G V + +++YD+ T RSRGF FVTM
Sbjct: 233 PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 292

Query: 462 ATAEE 476
           +  +E
Sbjct: 293 SDVDE 297



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 24/56 (42%), Positives = 39/56 (69%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           E  +++VGNL Y   +  L   F +AG+V+  ++IY++ TD+SRGF FVTM++ +E
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203

---

>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM-ATAEE 476
           IYVGNL Y  + A+LTA F+E GSV  VQ+  D+ T R RGF FV + A AEE
Sbjct: 3   IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEE 55

---

>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = +3

Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           G+   R+YVGN+P      EL     E G+++  +++YDK + RSR F FVTM T E+
Sbjct: 80  GEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVED 137



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           + P ++Y+GNL  T T   L   FSE G V   ++     T +S GF FV+ ++ EE
Sbjct: 181 ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEE 237

---

>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 23/66 (34%), Positives = 37/66 (56%)
 Frame = +3

Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +P R +P +     +I+VG L    T  ++   F + G VDD  +++DK T+R RGF FV
Sbjct: 96  FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFV 155

Query: 456 TMATAE 473
           T  + +
Sbjct: 156 TFESED 161



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P    +P ++++G L +  T   L   F + G V +  ++ D +T RSRGF FVT
Sbjct: 13  PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67

---

>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 23/66 (34%), Positives = 37/66 (56%)
 Frame = +3

Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +P R +P +     +I+VG L    T  ++   F + G VDD  +++DK T+R RGF FV
Sbjct: 96  FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 155

Query: 456 TMATAE 473
           T  + +
Sbjct: 156 TFESED 161



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P    +P ++++G L +  T   L   F + G V +  ++ D +T RSRGF FVT
Sbjct: 13  PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67

---

>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 23/66 (34%), Positives = 37/66 (56%)
 Frame = +3

Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +P R +P +     +I+VG L    T  ++   F + G VDD  +++DK T+R RGF FV
Sbjct: 96  FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 155

Query: 456 TMATAE 473
           T  + +
Sbjct: 156 TFESED 161



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P    +P ++++G L +  T   L   F + G V +  ++ D +T RSRGF FVT
Sbjct: 13  PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67

---

>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +3

Query: 279 PPRNRPALGQEPG---RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449
           PP +    GQ+P     I+VG +P      EL   F +AG + D++++ D +T  +RG+A
Sbjct: 57  PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 116

Query: 450 FVTMATAE 473
           FVT  T E
Sbjct: 117 FVTFCTKE 124

---

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           E GR++V NLPYT T  +L   FS+ G + ++    D +T + +GFAF+T    E
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454

---

>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +3

Query: 279 PPRNRPALGQEPG---RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449
           PP +    GQ+P     I+VG +P      EL   F +AG + D++++ D +T  +RG+A
Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206

Query: 450 FVTMATAE 473
           FVT  T E
Sbjct: 207 FVTFCTKE 214

---

>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +3

Query: 279 PPRNRPALGQEPG---RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449
           PP +    GQ+P     I+VG +P      EL   F +AG + D++++ D +T  +RG+A
Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206

Query: 450 FVTMATAE 473
           FVT  T E
Sbjct: 207 FVTFCTKE 214

---

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           PA+ +    ++VGN+PY  T  +L   FSE GSV   +++YD+ T + +G+ F
Sbjct: 9   PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61

---

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           PA+ +    ++VGN+PY  T  +L   FSE GSV   +++YD+ T + +G+ F
Sbjct: 9   PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61

---

>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           +I+VG LPY  T A L   F   G +++  +I D+ T +SRG+ FVTMA
Sbjct: 12  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 60

---

>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           +I+VG LPY  T A L   F   G +++  +I D+ T +SRG+ FVTMA
Sbjct: 33  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 81

---

>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +P R +P +     +I+VG L       ++   F + G V+D  +++DK T+R RGF FV
Sbjct: 97  FPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFV 156

Query: 456 T 458
           T
Sbjct: 157 T 157



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           +PG++++G L +  +   L   FS+ G + +  ++ D  T RSRGF FVT A
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70

---

>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +P R +P +     +I+VG L       ++   F + G V+D  +++DK T+R RGF FV
Sbjct: 97  FPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFV 156

Query: 456 T 458
           T
Sbjct: 157 T 157



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           +PG++++G L +  +   L   FS+ G + +  ++ D  T RSRGF FVT A
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70

---

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +3

Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           G E G+++VG L ++ T   L + FS+ G V D  I+ DK T++SRGF FV
Sbjct: 6   GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
 Frame = +3

Query: 279 PPRNRPALG---QEP-------GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKIT 428
           P R+RP  G   +EP        +I+VG +P+     EL   F+  G V +V +IYD   
Sbjct: 92  PERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEK 151

Query: 429 DRSRGFAFVT 458
            R RGF F+T
Sbjct: 152 QRPRGFGFIT 161

---

>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           IYVGN+ Y  TA EL A F   GSV+ V I+ DK +   +GFA++  +  E
Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 223

---

>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           IYVGN+ Y  TA EL A F   GSV+ V I+ DK +   +GFA++  +  E
Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 223

---

>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           IYVGN+ Y  TA EL A F   GSV+ V I+ DK +   +GFA++  +  E
Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 219

---

>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YVGN+ Y+ T  EL + F+  GSV+ V I+ DK T   +GFA++
Sbjct: 57  VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYI 101

---

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +3

Query: 282 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           P   PA+ +    ++VGN+PY  T  +L   FSE G V   +++YD+ T + +G+ F
Sbjct: 5   PVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61

---

>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +  + G+++VG L +      L   FS+ G + +V ++ D+ T RSRGF FVT    ++
Sbjct: 1   MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59

---

>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +  + G+++VG L +      L   FS+ G + +V ++ D+ T RSRGF FVT    ++
Sbjct: 1   MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59

---

>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +  + G+++VG L +      L   FS+ G + +V ++ D+ T RSRGF FVT    ++
Sbjct: 1   MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59

---

>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +  + G+++VG L +      L   FS+ G + +V ++ D+ T RSRGF FVT    ++
Sbjct: 1   MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59

---

>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +  + G+++VG L +      L   FS+ G + +V ++ D+ T RSRGF FVT    ++
Sbjct: 1   MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59

---

>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           I++G LPY     EL   F + G ++ ++I+ DKIT +S+G+AF+
Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFI 153

---

>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           PA+ +    ++VGN+PY  T  +L   FSE G V   +++YD+ T + +G+ F
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61

---

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           PA+ +    ++VGN+PY  T  +L   FSE G V   +++YD+ T + +G+ F
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61

---

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           PA+ +    ++VGN+PY  T  +L   FSE G V   +++YD+ T + +G+ F
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61

---

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           P R+YVG+L +  T   L   F   G ++ +Q++ D  T RS+G+ F+T + +E
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302

---

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           P R+YVG+L +  T   L   F   G ++ +Q++ D  T RS+G+ F+T + +E
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302

---

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +3

Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           +  E G+++VG L +      L   FS  G + +V ++ D+ T RSRGF F+T    E
Sbjct: 1   MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPE 58

---

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           R +VG L +    AEL   FS+ G V D +II D+ T RSRGF FVT
Sbjct: 7   RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVT 53

---

>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +3

Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           +  E G+++VG L +      L   FS  G + +V ++ D+ T RSRGF F+T    E
Sbjct: 1   MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPE 58

---

>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L + F + G++ D  ++ D  T RSRGF FVT AT EE
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           RP       +I+VG +        L   F + G ++ ++I+ D+ + + RGFAFVT
Sbjct: 96  RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151

---

>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L + F + G++ D  ++ D  T RSRGF FVT AT EE
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           RP       +I+VG +        L   F + G ++ ++I+ D+ + + RGFAFVT
Sbjct: 96  RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151

---

>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L + F + G++ D  ++ D  T RSRGF FVT AT EE
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           RP       +I+VG +        L   F + G ++ ++I+ D+ + + RGFAFVT
Sbjct: 96  RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151

---

>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L + F + G++ D  ++ D  T RSRGF FVT AT EE
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           RP       +I+VG +        L   F + G ++ ++I+ D+ + + RGFAFVT
Sbjct: 96  RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151

---

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +3

Query: 279 PPRNRPALGQEPG---------RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITD 431
           P R RP  G + G         +I+VG +P+     EL   F + G V +V +IYD    
Sbjct: 92  PERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ 151

Query: 432 RSRGFAFVT 458
           R RGF F+T
Sbjct: 152 RPRGFGFIT 160



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           E G+++VG L ++ T   L + FS+ G V D  I+ DK T++SRGF FV
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56

---

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +3

Query: 279 PPRNRPALGQEPG---------RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITD 431
           P R RP  G + G         +I+VG +P+     EL   F + G V +V +IYD    
Sbjct: 92  PERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ 151

Query: 432 RSRGFAFVT 458
           R RGF F+T
Sbjct: 152 RPRGFGFIT 160



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           E G+++VG L ++ T   L + FS+ G V D  I+ DK T++SRGF FV
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56

---

>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           P R+YVG+L +  T   L   F   G +D++ ++ D  T RS+G+ F+T + +E
Sbjct: 262 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315

---

>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1|
          Length = 858

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           E GR+++ NLP+  +  E+ A F   G+V  V I  DK T  S+G AFV+ +
Sbjct: 312 ESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFS 363



 Score = 32.7 bits (73), Expect = 0.50
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +I + NLP+  T  ++   FS  G +  V++   K  + +RGF FV  +T  E
Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLP-KKFDNTTRGFGFVEYSTVRE 771

---

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +3

Query: 279 PPRNRPALGQEPG---RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449
           PP +    G +PG    ++VG +P      EL   F +AG + D++++ D ++ ++RG+A
Sbjct: 150 PPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYA 209

Query: 450 FVTMATAE 473
           F+T    E
Sbjct: 210 FITFCGKE 217

---

>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           I+VG LPY  T  ++   FS+ G + ++ ++ DK T +S+GF F+
Sbjct: 38  IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82

---

>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 23/52 (44%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YV NLP T T  +L   F + GS+    I+ DK+T R RG AFV     EE
Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 266

---

>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 23/52 (44%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YV NLP T T  +L   F + GS+    I+ DK+T R RG AFV     EE
Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 264

---

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 28/47 (59%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           R +VG L +      L  AFS+ G + D +II D+ T RSRGF FVT
Sbjct: 7   RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVT 53

---

>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 23/52 (44%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YV NLP T T  EL   F + G++    I+ DK+T R RG AFV     EE
Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREE 241

---

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +3

Query: 282 PRNRPALGQE-PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P + P  G   P RI+VG + +    ++L   FS+ GSV +V+I+ D+    S+G+ FVT
Sbjct: 21  PTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 79

Query: 459 MATAEE 476
             T E+
Sbjct: 80  FETQED 85

---

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +3

Query: 282 PRNRPALGQE-PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P + P  G   P RI+VG + +    ++L   FS+ GSV +V+I+ D+    S+G+ FVT
Sbjct: 21  PTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 79

Query: 459 MATAEE 476
             T E+
Sbjct: 80  FETQED 85

---

>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 32/53 (60%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L + F + G++ D  ++ D  T RSRGF FVT AT E+
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 66



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           RP       +I+VG +        L   F + G ++ ++I+ D+ + + RGFAFVT
Sbjct: 96  RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151

---

>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X|
           protein 1)
          Length = 415

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           P R++V N+P+ F   +L   F + G V DV+II+++    S+GF FVTM   ++
Sbjct: 152 PKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQD 204

---

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = +3

Query: 282 PRNRPALGQE-----PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGF 446
           P N P  G       P RI+VG + +     +L   FS+ GSV +V+I+ D+    S+G+
Sbjct: 17  PLNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGY 75

Query: 447 AFVTMATAEE 476
            F+T  T E+
Sbjct: 76  GFITFETQED 85

---

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +3

Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           G+I+VG +       E    FS+ G++ D Q++ DK T +SRGF FVT  +A+
Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +3

Query: 285 RNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           R++  L +E  ++++G L +  T   L   F + G+V D++I+ D  T RSRGF F++
Sbjct: 149 RSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLS 206

---

>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           I++G LPY  T  ++   FS+ G + ++ ++ DK T +S+GF F+
Sbjct: 38  IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82

---

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           +E GR+++ N+ YT T  +    FS  G +++V I  D  T +S+GFA+V    A+
Sbjct: 327 RETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNAD 382



 Score = 33.1 bits (74), Expect = 0.38
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           G+I V NLP+  T  ++   FS  G +  V+ +  K    +RGFAFV     +E
Sbjct: 752 GKIIVKNLPFEATRKDVFELFSSFGQLKSVR-VPKKFDKSARGFAFVEFLLPKE 804

---

>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 22/52 (42%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YV NLP T T  EL   F + G++    I+ DK+T + RG AFV     EE
Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREE 224

---

>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 18/56 (32%), Positives = 33/56 (58%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           + G++++G L +      L  AF++ G + +V ++ D+ T RSRGF FVT    ++
Sbjct: 3   DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDD 58

---

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 23/47 (48%), Positives = 28/47 (59%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           R +VG L +      L  AFS+ G V D +II D+ T RSRGF FVT
Sbjct: 9   RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVT 55

---

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 24/54 (44%), Positives = 30/54 (55%)
 Frame = +3

Query: 297 ALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           A G    R +VG L +      L  AF++ G V D +II D+ T RSRGF FVT
Sbjct: 2   ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVT 55

---

>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 32/55 (58%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           P RI+VG +    T A+LT  FS  G+V   +II D+    S+G+ FVT  T +E
Sbjct: 32  PNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQE 85

---

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 22/47 (46%), Positives = 28/47 (59%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           R +VG L +      L  AFS+ G + D +II D+ T RSRGF FVT
Sbjct: 9   RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVT 55

---

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 18/50 (36%), Positives = 32/50 (64%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 461
           PG++++G L        L A F + G + ++ ++ D+ T++SRGFAFVT+
Sbjct: 7   PGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTL 56

---

>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 282 PRNRPALGQEPGR----IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449
           PR R +   E  R    ++V  L    T+ EL   F +AG V D QI+ DKI+ RS+G A
Sbjct: 225 PRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVA 284

Query: 450 FV 455
           +V
Sbjct: 285 YV 286

---

>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           Q+ GR+++ N+ Y+ T  +    FS  G + +V +  D  T  S+GFA+V  A  EE
Sbjct: 322 QKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEE 378



 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           G+I V NLP+  T  ++   F+  G +  V+ +  K    +RGFAFV     +E
Sbjct: 738 GKIIVKNLPFEATRKDVFELFNSFGQLKSVR-VPKKFDKSARGFAFVEFVLPKE 790

---

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           + GR++V NL YT +  +L   FS  G + ++    D +T + +GFAFVT    E
Sbjct: 398 DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 452

---

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           PG++++G L        L A F + G + +V ++ D+ T++SRGFAFVT
Sbjct: 7   PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVT 55

---

>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 16/46 (34%), Positives = 31/46 (67%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           R++V NLPY  + ++L   FS+ G ++++ + +D  +  S+GFA+V
Sbjct: 302 RLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYV 347

---

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 17/57 (29%), Positives = 34/57 (59%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +E GR+++ N+ Y  +  +  + FS+ G++++V I  D  T +S+GF +V     E+
Sbjct: 307 EETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKED 363

---

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 18/49 (36%), Positives = 31/49 (63%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           PG++++G L        L A F + G + ++ ++ D+ T++SRGFAFVT
Sbjct: 7   PGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVT 55

---

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +EP  I+VG L ++     L   F   G V   ++IY++ TDRSRG+ +V
Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYV 214

---

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           R +VG L +      L  AF+  G V D ++I D+ T RSRGF FVT ++ +
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

---

>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           ++++G L Y  T   L A F + G++ DV ++ D  T RSRGF F+T
Sbjct: 32  KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFIT 78



 Score = 36.2 bits (82), Expect = 0.045
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P  G    +++VG L        +   F   G++ D+ I+ DK T + RGFAFV
Sbjct: 115 PNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 168

---

>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/60 (35%), Positives = 33/60 (55%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           P   + P   +VGNL +  T  +L   F E   V  ++++ D +T+RSRGF +V   TA+
Sbjct: 87  PIPSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETAD 144

---

>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1|
          Length = 396

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +3

Query: 282 PRNRPALGQE----PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449
           P+ +P+   E    P R++V N+P+ F   +L   F + G + DV+II+++    S+GF 
Sbjct: 101 PQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFG 158

Query: 450 FVTMATAEE 476
           FVT   + +
Sbjct: 159 FVTFENSAD 167

---

>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1|
          Length = 397

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +3

Query: 282 PRNRPALGQE----PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFA 449
           P+ +P+   E    P R++V N+P+ F   +L   F + G + DV+II+++    S+GF 
Sbjct: 102 PQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFG 159

Query: 450 FVTMATAEE 476
           FVT   + +
Sbjct: 160 FVTFENSAD 168

---

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467
           R +VG L +  +   L  AF+  G + D ++I D+ T RSRGF FVT ++
Sbjct: 9   RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSS 58

---

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 470
           ++++G L Y  T   L   F + G + DV ++ D  T RSRGF F+T + A
Sbjct: 18  KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRA 68



 Score = 37.4 bits (85), Expect = 0.020
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           RP  G    +++VG +       +L   F + G+V    I+ DK T + RGFAFV
Sbjct: 100 RPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFV 154

---

>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YV NLP T T  +L   F + G +    I+ DK+T + RG AFV     EE
Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREE 249

---

>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/59 (37%), Positives = 32/59 (54%)
 Frame = +3

Query: 297 ALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           A  +E  ++++G L +  T  +L   FS+ G V D  +  D IT RSRGF FV    +E
Sbjct: 91  AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P R +    +EP  +I+VG L       ++   F   G V+ +++  D  T++ RGF F+
Sbjct: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228

Query: 456 TMATAE 473
           T    E
Sbjct: 229 TFKEEE 234

---

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 21/47 (44%), Positives = 28/47 (59%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           R +VG L +     +L   FS+ G V D +II D+ + RSRGF FVT
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVT 53

---

>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           +E  ++++G L +  T  +L   FS+ G V D  +  D IT RSRGF FV    +E
Sbjct: 94  REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P R +    +EP  +I+VG L       ++   F   G V+ +++  D  T++ RGF F+
Sbjct: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228

Query: 456 TMATAE 473
           T    E
Sbjct: 229 TFKEEE 234

---

>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           +E  ++++G L +  T  +L   FS+ G V D  +  D IT RSRGF FV    +E
Sbjct: 92  REEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P R +    +EP  +I+VG L       ++   F   G V+ +++  D  T++ RGF F+
Sbjct: 167 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 226

Query: 456 TMATAE 473
           T    E
Sbjct: 227 TFKEEE 232

---

>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           ++++G L Y  T   L A F + G++ DV ++ D  T RSRGF F+T
Sbjct: 25  KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFIT 71



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P  G    +++VG L        L   F + G +  V I+ DK T + RGFAF+
Sbjct: 108 PNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161

---

>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +3

Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467
           + P   ++  ++++G L +  T   L   F + G + D  ++ D  T RSRGF FVT + 
Sbjct: 18  HEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77

Query: 468 AEE 476
            EE
Sbjct: 78  VEE 80



 Score = 33.1 bits (74), Expect = 0.38
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           RP       +I+VG +        L   F   G ++ ++++ D+ + + RGFAFVT
Sbjct: 110 RPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVT 165

---

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           ++++G L +    A L  AF+  G V D ++I D+ T RSRGF FV
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81

---

>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           +++VG L +  T  EL   F + G ++ + +  D  T RSRGFAF+     E
Sbjct: 57  KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE 108



 Score = 37.0 bits (84), Expect = 0.026
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +3

Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           G+I+VG L    +  E+   F + G++ +V++ +DK   + +GF F+T
Sbjct: 136 GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFIT 183

---

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           ++++G LP   T  +L   F+  G V +V I+YD+   +SRGF F++
Sbjct: 97  KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLS 143



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           E G+++VG L +  T   L+  F   G + D  ++ +  + RSRGF FVT A
Sbjct: 5   ERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFA 56

---

>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = +3

Query: 285 RNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +NR        R+YV  +    T   LT  F++ G+V   +II DK T + RGF FVT
Sbjct: 104 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +I+VG L    T   +   +S+ G + D+ ++ D  T RSRGF FVT +   E
Sbjct: 24  KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76

---

>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YVG L        L AAF   G + D+QI  D  T++ RGFAFV    AE+
Sbjct: 8   LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 59

---

>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YVG L        L AAF   G + D+QI  D  T++ RGFAFV    AE+
Sbjct: 8   LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 59

---

>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)|
           (Hexaribonucleotide-binding protein 2) (Repressor of
           tamoxifen transcriptional activity)
          Length = 390

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           P R++V N+P+ F   +L   F + G + DV+II+++    S+GF FVT   + +
Sbjct: 120 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSAD 172

---

>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   F + G + D  ++ D  T RSRGF FVT +  EE
Sbjct: 28  KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEE 80



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           RP       +I+VG +        L       G ++ ++++ D+ + + RGFAFVT
Sbjct: 110 RPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVT 165

---

>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           Q+   ++VG+L    T  ++ AAF+  G + D +++ D  T +S+G+ FV+
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153

---

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           PG++++G L        L A F + G + +V +I D+ T +SRGFAF+T
Sbjct: 7   PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFIT 54

---

>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           ++VGNLPY    + +   F + GS+  V+I+ DK+T   +GF +V
Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYV 333

---

>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +3

Query: 285 RNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           R R A    PG IY+G++P +    +L   F++ G+V  +++   K T  S+G+A+V
Sbjct: 31  RKRKANALTPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYV 87

---

>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   F + G++ D  ++ D  T RSRGF FVT +  EE
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88



 Score = 33.5 bits (75), Expect = 0.29
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +I+VG +        L   F + G ++ ++++ D+ + + RGFAFVT
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173

---

>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   F + G++ D  ++ D  T RSRGF FVT +  EE
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88



 Score = 33.5 bits (75), Expect = 0.29
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +I+VG +        L   F + G ++ ++++ D+ + + RGFAFVT
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173

---

>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   F + G++ D  ++ D  T RSRGF FVT +  EE
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88



 Score = 33.5 bits (75), Expect = 0.29
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +I+VG +        L   F + G ++ ++++ D+ + + RGFAFVT
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173

---

>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 220

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +3

Query: 285 RNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           +++  L +  G IYV  LP+ F   EL+  F++ G + +V++  +K T  SR + F+   
Sbjct: 81  KDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFV 140

Query: 465 TAEE 476
             E+
Sbjct: 141 NKED 144

---

>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein
           homolog)
          Length = 247

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           + P   YVGNLP+     ++ A F +  S+  V+++ DK TD+ +GF +V
Sbjct: 38  EPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYV 86

---

>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein)
          Length = 247

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           + P   YVGNLP+     ++ A F +  S+  V+++ DK TD+ +GF +V
Sbjct: 38  EPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYV 86

---

>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic|
           region
          Length = 781

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           PG I+VG +  + +  EL+  FS+ G +  +++IYDK      G+ F++
Sbjct: 194 PGNIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFIS 242

---

>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           T  +L   FS+ G + DV I+YD+ + RSRGFAFV     ++
Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171

---

>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           T  +L   FS+ G + DV I+YD+ + RSRGFAFV     ++
Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171

---

>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           T  +L   FS+ G + DV I+YD+ + RSRGFAFV     ++
Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171

---

>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 282 PRNRPALGQEPGR-IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P++ P   +  G  ++V  +       EL   FS+ G+V  V+I+ + +T  SRGF F++
Sbjct: 89  PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148

Query: 459 MATAEE 476
            +T EE
Sbjct: 149 FSTVEE 154

---

>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           ++VG+L    T  ++ AAF+  G + D +++ D  T +S+G+ FV+
Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153

---

>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +++VG +        L   F E G +D ++II DK + + RGFAFVT
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVT 147



 Score = 37.0 bits (84), Expect = 0.026
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   + + G++ D  ++ D  + RSRGF FVT +   E
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNE 62

---

>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           +Y+G++PY  T  ++    S  G V ++++++D  T RS+G+AF+     E
Sbjct: 20  VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLE 70

---

>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = +3

Query: 363 LTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           L +AFS  G V + +II D+ T RSRGF FVT +T E
Sbjct: 3   LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEE 39

---

>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           R++V NL Y    +EL   FS  G ++++ + +D     S+GFA+V  A
Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYA 344

---

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T T  EL   FS+ G +   +I+ D++T  SRG  F+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 183



 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V++V++I D  T++ +GF FVTM   +E
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 355

---

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T T  EL   FS+ G +   +I+ D++T  SRG  F+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 178



 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V++V++I D  T++ +GF FVTM   +E
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 350

---

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T T  EL   FS+ G +   +I+ D++T  SRG  F+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171



 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V++V++I D  T++ +GF FVTM   +E
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 343

---

>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           ++VG+L    T  ++ +AF+  G + D +++ D  T +S+G+ FV+
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161

---

>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T T  EL   FS+ G +   +I+ D++T  SRG  F+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171



 Score = 34.3 bits (77), Expect = 0.17
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V +V++I D  T++ +GF FVTM   +E
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 330

---

>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           ++VG+L    T  ++ +AF+  G + D +++ D  T +S+G+ FV+
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 144

---

>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T T  EL   FS+ G +   +I+ D++T  SRG  F+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171



 Score = 34.3 bits (77), Expect = 0.17
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V +V++I D  T++ +GF FVTM   +E
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329

---

>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T T  EL   FS+ G +   +I+ D++T  SRG  F+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171



 Score = 34.3 bits (77), Expect = 0.17
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V +V++I D  T++ +GF FVTM   +E
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329

---

>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T T  EL   FS+ G +   +I+ D++T  SRG  F+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171



 Score = 34.3 bits (77), Expect = 0.17
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V +V++I D  T++ +GF FVTM   +E
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329

---

>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           RP    +  +++VG L       +L   FS+ G+V+  +II DK + + RGF FV
Sbjct: 90  RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144



 Score = 33.5 bits (75), Expect = 0.29
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L    + + L   F   G++ D  ++ +  T RSR F FVT +  EE
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60

---

>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 285 RNRPALGQ--EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           + RP  GQ   PG +YVG+LP      +L + F + G V  +++   K T  S+G+ FV
Sbjct: 33  KKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFV 91

---

>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly|
           U-binding splicing factor) (Protein half pint) (PUF60
           homolog)
          Length = 637

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           R+YVG++ +      +  AF+  G +  + + +D IT + +GFAFV
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFV 176

---

>DAZ1_CAEEL (Q20870) DAZ protein 1|
          Length = 499

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           P RI+VG  P + T  EL   F +  +V DV+++   +  +S+G+ F+T  T ++
Sbjct: 66  PNRIFVGGFPTSTTETELREHFEKFFAVKDVKMV-KSLDGQSKGYGFITFETEDQ 119

---

>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           ++VGNLPY    + L   F + GS+  V+I+ + +T   RGF +V
Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYV 331



 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQ 407
           ++VGNLP T    +L + F E G V+ V+
Sbjct: 185 VFVGNLPVTCNKKKLKSFFKEYGQVESVR 213

---

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 300 LGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           L +    ++VGNL +  T  +L+ AF   G +  +++  D  + R +GF +VT +
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415



 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           ++VG L +      L   F E G++   ++I D  + RS+G+ +V   T E
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315

---

>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           ++VGNLPY    + L   F + GS+  V+I+ + +T   RGF +V
Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYV 337



 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQ 407
           ++VGNLP T    +L + F E G V+ V+
Sbjct: 191 VFVGNLPVTCNKKKLKSFFKEYGQVESVR 219

---

>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   F + G++ D  ++ D  + RSRGF FVT  + +E
Sbjct: 15  KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +RP       +I+VG +        L   F + G ++ ++I+ D+ + + RGFAFVT
Sbjct: 96  SRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152

---

>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           PG IY+G++P      +L   FS+ G+V  +++   K T  S+G+A+V
Sbjct: 40  PGVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYV 87

---

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YVG+LP     + L   FS AG V  +++  D IT RS G+A+V
Sbjct: 4   LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYV 48



 Score = 33.1 bits (74), Expect = 0.38
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YV NL  T     L  AFS  G++   +++ D+   RS+GF FV    A E
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASE 339

---

>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           + GR+++ N+ YT    +    FS  G +++V +  D  T +S+GFA+V
Sbjct: 343 QTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYV 391



 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++ G+I V NLP+  T  ++   F+  G +  V+ +  K    +RGFAFV     +E
Sbjct: 760 KKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVR-VPKKFDKSARGFAFVEFLLPKE 815

---

>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           GR+++ N+ Y  T  +    FS  G +++V +  D  T +S+GFA+V     E
Sbjct: 301 GRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPE 353



 Score = 32.7 bits (73), Expect = 0.50
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           G+I V NLP+  T  ++   FS  G +  V+ +  K    +RGFAFV      E
Sbjct: 712 GKIIVKNLPFEATRKDVFELFSSFGQLKSVR-VPKKFDKSARGFAFVEFLLPSE 764

---

>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 470
           ++ G+++VG L +  +  +L   F++ G V D  I  D  T RSRGF F+    A
Sbjct: 65  EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 119



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 282 PRNRPALGQEP-GRIYVGNL-PYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P+   A+ ++P  +I+VG L P + T  ++   F E G ++ +++  D   ++ RGF F+
Sbjct: 140 PKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFI 199

Query: 456 TMATAE 473
           T    E
Sbjct: 200 TFKEEE 205

---

>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           ++ G+++VG L +  +  +L   F++ G V D  I  D  T RSRGF F+
Sbjct: 72  EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI 121



 Score = 33.5 bits (75), Expect = 0.29
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +3

Query: 282 PRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P+   A+ ++P  +I+VG L    T  ++   F + G ++ +++  D   ++ RGF F+T
Sbjct: 147 PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFIT 206

---

>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           T  +L   FS  G +  V ++YD+ T RSRGFAFV
Sbjct: 129 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 163

---

>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 318 RIYVGNL-PYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           ++++G L PYT T   L   + + G V DV ++ D  T RSRGF F+T
Sbjct: 33  KLFIGGLAPYT-TEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFIT 79



 Score = 33.1 bits (74), Expect = 0.38
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +++VG L        L   F + G+V  V+++ DK T + RGFAFV
Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFV 169

---

>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           ++VGN+PY  +  ++T  F++ G V   +++ D  T   +G+ F     +E
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSE 59

---

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           T  +L   FS  G +  V ++YD+ T RSRGFAFV
Sbjct: 131 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 165

---

>NOP12_SCHPO (O13741) Nucleolar protein 12|
          Length = 438

 Score = 37.0 bits (84), Expect = 0.026
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           ++VGNL +      L   F + GS+D V+I+ D  T+  +GFA++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYI 316

---

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 37.0 bits (84), Expect = 0.026
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           IYV N+    T  EL   FS+ G++   +++ D+   +S+GF FV  +T EE
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEE 356

---

>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 37.0 bits (84), Expect = 0.026
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   + + G + D  ++ D  + RSRGF FVT ++  E
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62



 Score = 35.8 bits (81), Expect = 0.059
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +++VG +        L   F E G +D ++II D+ + + RGF FVT
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 147

---

>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 37.0 bits (84), Expect = 0.026
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   + + G + D  ++ D  + RSRGF FVT ++  E
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74



 Score = 35.8 bits (81), Expect = 0.059
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +++VG +        L   F E G +D ++II D+ + + RGF FVT
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159

---

>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           IYVG L    T   L  AF   G + D+Q+  D  + R RGFAF+    +E+
Sbjct: 8   IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSED 59

---

>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++++G L +  T   L   + + G + D  ++ D  + RSRGF FVT +   E
Sbjct: 10  KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNE 62



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           +++VG +        L   F E G ++  +II DK + + RGF FVT
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVT 147

---

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YVG+L  + + A L   FS  GSV  +++  D IT  S G+A+V
Sbjct: 39  LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYV 83

---

>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           V NL Y  +   L   F + G V DV I  D+ T  SRGFAFV
Sbjct: 18  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60

---

>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T +  E+   FS+ G +   +I+ D++T  SRG  F+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171



 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V +V++I D  T++ +GF FVTM   +E
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 337

---

>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)|
           (Increased sodium tolerance protein 3)
          Length = 148

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           IY+GNL    T  ++   FSE G   DV +  D+ T  S+GFA++
Sbjct: 33  IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYL 77

---

>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           V NL Y  +   L   F + G V DV I  D+ T  SRGFAFV
Sbjct: 17  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 59

---

>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           V NL Y  +   L   F + G V DV I  D+ T  SRGFAFV
Sbjct: 17  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 59

---

>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           V NL Y  +   L   F + G V DV I  D+ T  SRGFAFV
Sbjct: 17  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 59

---

>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           V NL Y  +   L   F + G V DV I  D+ T  SRGFAFV
Sbjct: 17  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 59

---

>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           PA   +   ++VGNL +      L   F   GS++ V+I+ D  T+  +GFA+V
Sbjct: 221 PAPHDKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYV 274

---

>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 35.8 bits (81), Expect = 0.059
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           PA   +   I+VGNL +      L   F   G ++ V+II D  T+  +GFA+V
Sbjct: 272 PAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYV 325

---

>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3|
           subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding
           subunit) (eIF3g)
          Length = 256

 Score = 35.8 bits (81), Expect = 0.059
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           V NLP      EL   F + G V  + I  DK+T   +GFAFVT  + ++
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229

---

>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34)
          Length = 293

 Score = 35.8 bits (81), Expect = 0.059
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           PG +YV +LP      ++ + FS+ G+V   ++   K T  S+G+AFV
Sbjct: 44  PGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFV 91

---

>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           ++Y+G L        L  AFS    V + +++ +K+T RSRG+ FV   + +
Sbjct: 32  KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISED 83

---

>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I+V NL      + L   F   G+V +V++I D  T++ +GF FVTM   +E
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 337



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV  LP T +  E+   FS+ G +   +I+ D+ T  SRG  F+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFI 171

---

>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +Y+  LP T T  ++   FS  G + + +++ D+ T  SRG AF+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I++ NL        L   F   G+V +V++I D  T++ +GF FVTM   EE
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297

---

>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +Y+  LP T T  ++   FS  G + + +++ D+ T  SRG AF+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFI 152



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I++ NL        L   F   G+V +V++I D  T++ +GF FVTM   EE
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297

---

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++VG LP +  + +L   FS+ G V    ++ +K +   RGF +VT +  E+
Sbjct: 5   LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLED 56

---

>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4|
          Length = 237

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 273 YYPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           Y PP        +   +++GN+ +  T  E+   F   G +    I  DK T + + FA+
Sbjct: 87  YVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAY 146

Query: 453 V 455
           +
Sbjct: 147 I 147

---

>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           + NL Y  T  +L   F   G + DV I  DK + +S+GF FV
Sbjct: 23  IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65

---

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++VG LP +  + +L   FS+ G V    ++ +K +   RGF +VT +  E+
Sbjct: 5   LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLED 56

---

>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12|
          Length = 426

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 294 PALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMA 464
           PA       ++VGNL +  +   L   F   G ++ V+I+ D  T+  +GFA+V  A
Sbjct: 252 PAPHDRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFA 308

---

>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2|
          Length = 218

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           IYVGNL +  +  +L   FS+ GS++ + +  D+      GF F+   T +E
Sbjct: 48  IYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQE 99

---

>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +E   ++V N+PY  T   L   FS+ GSV     + DK T  ++G AFV
Sbjct: 287 REDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFV 336



 Score = 29.6 bits (65), Expect = 4.2
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           G +   ++V ++P   T  +L   FS    +    ++ D    RSRGF FV+ A  ++
Sbjct: 22  GLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDT-NKRSRGFGFVSFAVEDD 78

---

>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           ++ V NLP+  T  E+   FS  G +  ++I   K    SRGFAF   +TA+E
Sbjct: 705 KLVVKNLPFEVTKKEVRTLFSAYGKLVALRIP-KKFNQSSRGFAFAEFSTAKE 756



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAG-SVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +   RI+V NLP T T AE    FS  G  V DV++I       +R   FV   +AE+
Sbjct: 2   ESSSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI------PARHIGFVGYKSAED 53

---

>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 306 QEPGRI-YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +EP  I +VGNL +  T A+L   F + G +  V+++  + T + +GF FV
Sbjct: 224 KEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274

---

>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467
           +YVGNL +  T  ++   FS++G V  + +  DK+   + GF FV   T
Sbjct: 34  LYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYT 82

---

>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F+  GSV +V+II D+ T  S+G+ FV+
Sbjct: 39  PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVS 86

---

>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F+  GSV +V+II D+ T  S+G+ FV+
Sbjct: 39  PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVS 86

---

>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F+  GSV +V+II D+ T  S+G+ FV+
Sbjct: 39  PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVS 86

---

>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           ++VGNL +      L   F   G ++ V+II D  T+  +GFA+V
Sbjct: 361 VFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYV 405

---

>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+   F+  GSV +V+II D+ T  S+G+ FV+
Sbjct: 39  PNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVS 86

---

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 276 YPPRNRP-ALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           + P N P A G     ++V  + Y  T ++L   F   G +  + ++Y K + + RG+AF
Sbjct: 89  WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148

Query: 453 V 455
           +
Sbjct: 149 I 149

---

>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           ++VG L +      L  AFS  G V+ V+I+ D  T+  +GFA+V
Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYV 320

---

>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12|
          Length = 197

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 273 YYPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           Y PP        +   +++GN+ +  T  E+   F   G +    I  DK T + + FA+
Sbjct: 47  YVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAY 106

Query: 453 V 455
           +
Sbjct: 107 I 107

---

>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 276 YPPRNRP-ALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAF 452
           + P N P A G     ++V  + Y  T ++L   F   G +  + ++Y K + + RG+AF
Sbjct: 89  WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148

Query: 453 V 455
           +
Sbjct: 149 I 149

---

>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2|
           (Suppressor of CDC2 with RNA-binding motif 3)
          Length = 407

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           Q+P  +Y+ NLP +    EL       G V   +I+ D  +  SRG  F  M + E+
Sbjct: 132 QDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEK 187

---

>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +3

Query: 279 PPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P  ++ A G     ++V  + Y  T ++L   F   G +  + ++Y+K + + RG+AF+
Sbjct: 91  PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFI 149

---

>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B) (HSP27 estrogen response element-TATA
           box-binding protein) (HSP27 ERE-TATA-binding protein)
          Length = 915

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 324 YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +V  L  T  A +L   FS+ G V   +++ +  +  +R + FVTM+TAEE
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEE 459

---

>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP|
           core protein C) (Fragment)
          Length = 158

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P R +    +EP  +I+VG L       ++   F   G V+ +++  D  T++ RGF F+
Sbjct: 21  PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 80

Query: 456 TMATAE 473
           T    E
Sbjct: 81  TFKEEE 86

---

>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2|
          Length = 383

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           Q+P  +Y+ NLP +    EL       G V   +I+ D  +  SRG  F  M + E+
Sbjct: 134 QDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEK 189

---

>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1) (Suppressor
           of CDC2 with RNA-binding motif 2)
          Length = 406

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           Q+P  +Y+ NLP +    EL       G V   +I+ D  +  SRG  F  M + E+
Sbjct: 138 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEK 193

---

>RAVR2_MOUSE (Q7TPD6) Protein raver-2|
          Length = 673

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           + NLP +FT  E        G+++   ++Y ++T  S+G+ FV
Sbjct: 135 ITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 177

---

>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 324 YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +V  L  T  A +L   FS  G V   +++ +  +  +R + FVTM+TAEE
Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEE 481

---

>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +I + NLP+  T  ++   F   GS+  V++   K    SRGFAF    +A+E
Sbjct: 704 KILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKE 755



 Score = 33.5 bits (75), Expect = 0.29
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           ++ GR+++ NL YT    +    FS+ G +++V +  +  T + +GFA V     E
Sbjct: 298 RKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPE 353

---

>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)|
          Length = 225

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEP-GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           P R +    +EP  +I+VG L       ++   F   G V+ +++  D  T++ RGF F+
Sbjct: 159 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 218

Query: 456 TMATAE 473
           T    E
Sbjct: 219 TFNQEE 224

---

>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1)
          Length = 403

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           Q+P  +Y+ NLP +    EL       G V   +++ D  +  SRG  F  M + E+
Sbjct: 138 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGASRGVGFARMESTEK 193

---

>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)|
           (Putative tumor suppressor LUCA15) (G15 protein)
           (NY-REN-9 antigen)
          Length = 815

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +3

Query: 339 PYTFTAAELTAAFSEAG-SVDDVQIIYDKITDRSRGFAFVTMATA 470
           P+T   + +TA    A  +V+++++I DK T ++RGFAFV +++A
Sbjct: 240 PHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSA 284

---

>RAVR2_HUMAN (Q9HCJ3) Protein raver-2|
          Length = 691

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 327 VGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           + N+P +FT+ E        G+++   ++Y ++T  S+G+ FV
Sbjct: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 188

---

>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 156

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YVGNL +  T  ++   FS++G +  + +  DK+   + GF FV
Sbjct: 42  LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86

---

>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
           (NCBP-interacting protein 1) (NIP1) (Cell
           proliferation-inducing gene 55 protein)
          Length = 156

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YVGNL +  T  ++   FS++G +  + +  DK+   + GF FV
Sbjct: 42  LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86

---

>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2|
          Length = 156

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YVGNL +  T  ++   FS++G +  + +  DK+   + GF FV
Sbjct: 42  LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86

---

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 285 RNRPALGQEPG--RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           R R   G  P    +YV NLP   T  EL   F + G +    ++ D+ +  SR F FV 
Sbjct: 213 RARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVN 271

Query: 459 MATAE 473
             + E
Sbjct: 272 FVSPE 276

---

>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein|
          Length = 124

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +YV NLP+  T+ E+   F + G++  ++I  DK T   +G AFV
Sbjct: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFV 62

---

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           P  +++GNL    + AEL  A SE  + +D+ ++ D  T  +R F +V   +AE+
Sbjct: 306 PFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAED 359

---

>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +3

Query: 276 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           Y    R  +G    +++VG+L    T  E+   F + G V+DV ++ D+   +SRG  FV
Sbjct: 198 YADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFV 256

Query: 456 TMATAE 473
             ++ E
Sbjct: 257 KYSSKE 262

---

>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein|
          Length = 121

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 285 RNRPALGQEPGRI-YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           RN   L  E  R+ YV NLPY  T+ E+   F + G++  +++     T  +RG AFV
Sbjct: 4   RNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV---GNTPETRGTAFV 58

---

>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I V NL       +L   F   GS+  + +  DK T +S+GFAF++    E+
Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292

---

>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           I V NL       +L   F   GS+  + +  DK T +S+GFAF++    E+
Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292

---

>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein|
          Length = 348

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSR----GFAFV 455
           N PA   +  R++VG L  +   +E+ + F   G+V  V I + ++   +R    G AFV
Sbjct: 35  NTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFV 94

Query: 456 TMATAEE 476
           T    E+
Sbjct: 95  TFNNQED 101

---

>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1|
          Length = 476

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           RI++    YT + + L   FS  G + D+ ++ DK T  S+G AFV  A + +
Sbjct: 27  RIFLVISKYT-SESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +R    +E  RI+V  +P ++T  +L   F   G ++   +I +K+T  S+G  +V
Sbjct: 112 HRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYV 166

---

>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467
           R++VGNLP   T  E+   F + G   +V I  DK      GF F+ + T
Sbjct: 75  RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLET 118

---

>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467
           R++VGNLP   T  E+   F + G   +V I  DK      GF F+ + T
Sbjct: 75  RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLET 118

---

>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F   GSV +V+II ++ T  S+G+ FV+
Sbjct: 39  PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 86

---

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           G E   +++ +LP  F   +L   F   G+V   ++  DK T+ S+ F FV+
Sbjct: 397 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448

---

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 303 GQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           G E   +++ +LP  F   +L   F   G+V   ++  DK T+ S+ F FV+
Sbjct: 397 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448

---

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +Y+ NL  T    +L   FS  GS+   +++ +    RS+GF FV  ++ EE
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345

---

>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467
           R++VGNLP   T  E+   F + G   +V I  DK      GF F+ + T
Sbjct: 77  RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLET 120

---

>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F   GSV +V+II ++ T  S+G+ FV+
Sbjct: 39  PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 86

---

>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F   GSV +V+II ++ T  S+G+ FV+
Sbjct: 369 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 416



 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F   GSV +V+II ++ T  S+G+ FV+
Sbjct: 204 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 251



 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F   GSV +V+II ++ T  S+G+ FV+
Sbjct: 39  PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 86

---

>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467
           R++VGNLP   T  E+   F + G   +V I  DK      GF F+ + T
Sbjct: 80  RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLET 123

---

>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           RI++    YT   + L   FS  G + D+ ++ DK T  S+G AFV  A + +
Sbjct: 27  RIFLVISKYT-PESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +3

Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +R    +E  RI+V  +P ++T  +L   F   G ++   II +K+T  S+G  +V
Sbjct: 112 HRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYV 166

---

>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F   GSV +V+II ++ T  S+G+ FV+
Sbjct: 204 PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 251



 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVT 458
           P  ++VG +       E+ + F   GSV +V+II ++ T  S+G+ FV+
Sbjct: 39  PNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVS 86

---

>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           I+VGN+    T  ++   F + G +  + ++YD+ T   +G+ ++
Sbjct: 66  IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYI 110

---

>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YVGNLP      E+   FS+ G V  + +   K+  R  G+AFV    A +
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARD 57

---

>POF_DROME (Q9W123) Protein painting of fourth (Zeste-interacting protein 16)|
           (Zip16 protein)
          Length = 495

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +3

Query: 309 EPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +P  +YVGN+P+  T + + A F+ A  VD   +  +K   R+R +AFV  A+ ++
Sbjct: 213 DPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREK---RAR-YAFVRYASPDQ 264

---

>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           PP    +   E G  I++G LP      EL     + G + +++++ D     +RG+AFV
Sbjct: 43  PPPGWDSTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFV 101

Query: 456 TMATAEE 476
           T +  +E
Sbjct: 102 TFSNKQE 108

---

>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           R++VGNL        L  AFSE  S+   +++ D+   ++RGF FV+   +++
Sbjct: 31  RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQ 82

---

>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (mNIFK)
          Length = 317

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 315 GRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           G +Y+G+LP T + + +    ++ G +   ++   K T  S+G+AFV
Sbjct: 47  GVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFV 93

---

>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 291 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 470
           R  LG +  +I+V NLP+  T  +L   FS+ G V   +I  +    +S+G   V   +A
Sbjct: 506 RDRLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME--NGKSKGCGTVRFESA 563

Query: 471 E 473
           E
Sbjct: 564 E 564

---

>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein|
          Length = 138

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 285 RNRPA-LGQEPGRI-YVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +NR A L  E  RI Y+ NLPY  T  E+   F + G+V  +++     T  +RG AFV
Sbjct: 7   QNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRV---GNTAETRGTAFV 62

---

>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3|
           RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3
           p33) (Translation initiation factor eIF3, p33 subunit)
          Length = 282

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
 Frame = +3

Query: 273 YYPPRNRPALGQEPG------------RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIY 416
           Y  P  R   G+E G             + V NL       EL   F   G +  V +  
Sbjct: 176 YIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAK 235

Query: 417 DKITDRSRGFAFVT 458
           DK T R++GFAFV+
Sbjct: 236 DKETGRAKGFAFVS 249

---

>CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2|
          Length = 382

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 315 GRIYVGNLPYTFTAAELTAA-FSEAGSVDDVQIIYDKITDRSRGFAFVTMAT 467
           GRI+V +        E+ +  FSE G VD +++++DK      G AFVT AT
Sbjct: 191 GRIHVSDAAKAGALDEIVSRHFSEWGDVDRIRVLHDK------GVAFVTYAT 236

---

>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           Q+   + V  LP+  T  +L   FS  G V  VQ+  D  T  S+GF FV     E
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 156

---

>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 363 LTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           L   FS  G + D+ ++ DK T  S+G AFV  A + +
Sbjct: 41  LRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQ 78



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +3

Query: 288 NRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           +R    +E  RI+V  +P ++T  +L   F   G ++   II +K+T  S+G  +V
Sbjct: 112 HRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYV 166

---

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 312 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           P  +++GNL    + AEL  A SE  + +D+  + D  T  +R F +V   +AE+
Sbjct: 309 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV-DVRTGTNRKFGYVDFESAED 362

---

>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           PP        E G  I++G LP      EL     + G + +++++ D     +RG+AFV
Sbjct: 43  PPPGWDTTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFV 101

Query: 456 TMATAEE 476
           T +  +E
Sbjct: 102 TFSNKQE 108

---

>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           PP    A   E G  I++G LP      EL     + G + +++++ D     +RG+AFV
Sbjct: 43  PPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFV 101

Query: 456 TMATAEE 476
           T +   E
Sbjct: 102 TFSNKVE 108

---

>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +3

Query: 306 QEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAE 473
           Q+   + V  LP+  T  +L   FS  G V  VQ+  D  T  S+GF FV     E
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 156

---

>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 318 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +I+VGNL    TA E+ + FS+ G + +  I+        + F FV M +  E
Sbjct: 3   KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSE 47

---

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 321 IYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEE 476
           +YVG L    +   L   F +AG V +  +  D++T + +G+ FV   + E+
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66

---

>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 PPRNRPALGQEPG-RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           PP    A   E G  I++G LP      EL     + G + +++++ D     +RG+AFV
Sbjct: 43  PPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFV 101

Query: 456 TMATAEE 476
           T +   E
Sbjct: 102 TFSNKLE 108

---

>TRA2_DROVI (O02008) Transformer-2 sex-determining protein|
          Length = 272

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 351 TAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 455
           T  ++   F++ G ++ +Q++ D  T RSRGF F+
Sbjct: 117 TQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFI 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.123    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,982,743
Number of Sequences: 219361
Number of extensions: 620849
Number of successful extensions: 2508
Number of sequences better than 10.0: 301
Number of HSP's better than 10.0 without gapping: 2346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---