ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdf22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016384.1| Zea mays clone Contig217 mRNA sequence Length = 696 Score = 226 bits (114), Expect = 4e-56 Identities = 177/198 (89%) Strand = Plus / Plus Query: 12 tggtgccgtccgacaaggccgcggaggccggcggcgacaaggcccccgtcgtcgacgtct 71 ||||||| |||||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 286 tggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgcagatcgacgtca 345 Query: 72 cgcagttcggctacttcaaggtgctcggcaaggggatgctgccggagaagcccatcgtcg 131 |||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||| Sbjct: 346 cgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaaagcccattgtcg 405 Query: 132 tcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccggcggcgctg 191 ||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| | Sbjct: 406 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagcaggcggcgccg 465 Query: 192 tcgtgctcgtcgcctagg 209 |||||||| |||||||| Sbjct: 466 tcgtgctcaccgcctagg 483
>gb|BT017787.1| Zea mays clone EL01N0504C04.c mRNA sequence Length = 711 Score = 226 bits (114), Expect = 4e-56 Identities = 177/198 (89%) Strand = Plus / Plus Query: 12 tggtgccgtccgacaaggccgcggaggccggcggcgacaaggcccccgtcgtcgacgtct 71 ||||||| |||||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 300 tggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgcagatcgacgtca 359 Query: 72 cgcagttcggctacttcaaggtgctcggcaaggggatgctgccggagaagcccatcgtcg 131 |||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||| Sbjct: 360 cgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaaagcccattgtcg 419 Query: 132 tcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccggcggcgctg 191 ||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| | Sbjct: 420 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagcaggcggcgccg 479 Query: 192 tcgtgctcgtcgcctagg 209 |||||||| |||||||| Sbjct: 480 tcgtgctcaccgcctagg 497
>ref|XM_468609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 694 Score = 224 bits (113), Expect = 1e-55 Identities = 173/191 (90%), Gaps = 4/191 (2%) Strand = Plus / Plus Query: 3 ctctggtcc-tggtgccgtccgacaaggccgcggaggccggcggcgacaaggcccccgtc 61 ||||||||| ||||||| ||||||||||||| |||||||||| || ||||||||||||| Sbjct: 262 ctctggtccatggtgcccaccgacaaggccgccgaggccggcgccggcaaggcccccgtc 321 Query: 62 gtcgacgtctcgcagttcggctacttcaaggtgctcggcaaggggatgctgcc---ggag 118 |||||||| | |||||||||||| |||||||||||||||||||||||| || | || Sbjct: 322 atcgacgtcacccagttcggctacaccaaggtgctcggcaaggggatgcttcccccgcag 381 Query: 119 aagcccatcgtcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaaggcc 178 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 382 aggcccatcgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcc 441 Query: 179 gccggcggcgc 189 ||||||||||| Sbjct: 442 gccggcggcgc 452
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 224 bits (113), Expect = 1e-55 Identities = 173/191 (90%), Gaps = 4/191 (2%) Strand = Plus / Plus Query: 3 ctctggtcc-tggtgccgtccgacaaggccgcggaggccggcggcgacaaggcccccgtc 61 ||||||||| ||||||| ||||||||||||| |||||||||| || ||||||||||||| Sbjct: 16599731 ctctggtccatggtgcccaccgacaaggccgccgaggccggcgccggcaaggcccccgtc 16599790 Query: 62 gtcgacgtctcgcagttcggctacttcaaggtgctcggcaaggggatgctgcc---ggag 118 |||||||| | |||||||||||| |||||||||||||||||||||||| || | || Sbjct: 16599791 atcgacgtcacccagttcggctacaccaaggtgctcggcaaggggatgcttcccccgcag 16599850 Query: 119 aagcccatcgtcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaaggcc 178 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 16599851 aggcccatcgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcc 16599910 Query: 179 gccggcggcgc 189 ||||||||||| Sbjct: 16599911 gccggcggcgc 16599921 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgcggaggccggcggcgaca 50 |||||||||||||||||||| Sbjct: 11143430 cgcggaggccggcggcgaca 11143411 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ggccgcggaggccggcggcg 47 |||||||||||||||||||| Sbjct: 1959655 ggccgcggaggccggcggcg 1959636
>gb|AC135559.4| Oryza sativa chromosome 3 BAC OSJNBa0030J19 genomic sequence, complete sequence Length = 133843 Score = 224 bits (113), Expect = 1e-55 Identities = 173/191 (90%), Gaps = 4/191 (2%) Strand = Plus / Minus Query: 3 ctctggtcc-tggtgccgtccgacaaggccgcggaggccggcggcgacaaggcccccgtc 61 ||||||||| ||||||| ||||||||||||| |||||||||| || ||||||||||||| Sbjct: 54312 ctctggtccatggtgcccaccgacaaggccgccgaggccggcgccggcaaggcccccgtc 54253 Query: 62 gtcgacgtctcgcagttcggctacttcaaggtgctcggcaaggggatgctgcc---ggag 118 |||||||| | |||||||||||| |||||||||||||||||||||||| || | || Sbjct: 54252 atcgacgtcacccagttcggctacaccaaggtgctcggcaaggggatgcttcccccgcag 54193 Query: 119 aagcccatcgtcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaaggcc 178 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 54192 aggcccatcgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcc 54133 Query: 179 gccggcggcgc 189 ||||||||||| Sbjct: 54132 gccggcggcgc 54122
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 224 bits (113), Expect = 1e-55 Identities = 134/141 (95%) Strand = Plus / Minus Query: 72 cgcagttcggctacttcaaggtgctcggcaaggggatgctgccggagaagcccatcgtcg 131 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 25183511 cgcagttcggctacttcaaggtgctcgggaagggtctgctgccggagaagcccatcgtcg 25183452 Query: 132 tcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccggcggcgctg 191 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct: 25183451 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccgccggcggcgccg 25183392 Query: 192 tcgtgctcgtcgcctagggtt 212 |||||||| ||||||||||| Sbjct: 25183391 tcgtgctcaccgcctagggtt 25183371
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 224 bits (113), Expect = 1e-55 Identities = 173/191 (90%), Gaps = 4/191 (2%) Strand = Plus / Plus Query: 3 ctctggtcc-tggtgccgtccgacaaggccgcggaggccggcggcgacaaggcccccgtc 61 ||||||||| ||||||| ||||||||||||| |||||||||| || ||||||||||||| Sbjct: 16593364 ctctggtccatggtgcccaccgacaaggccgccgaggccggcgccggcaaggcccccgtc 16593423 Query: 62 gtcgacgtctcgcagttcggctacttcaaggtgctcggcaaggggatgctgcc---ggag 118 |||||||| | |||||||||||| |||||||||||||||||||||||| || | || Sbjct: 16593424 atcgacgtcacccagttcggctacaccaaggtgctcggcaaggggatgcttcccccgcag 16593483 Query: 119 aagcccatcgtcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaaggcc 178 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 16593484 aggcccatcgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcc 16593543 Query: 179 gccggcggcgc 189 ||||||||||| Sbjct: 16593544 gccggcggcgc 16593554 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgcggaggccggcggcgaca 50 |||||||||||||||||||| Sbjct: 11140193 cgcggaggccggcggcgaca 11140174 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ggccgcggaggccggcggcg 47 |||||||||||||||||||| Sbjct: 1959653 ggccgcggaggccggcggcg 1959634
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 224 bits (113), Expect = 1e-55 Identities = 134/141 (95%) Strand = Plus / Minus Query: 72 cgcagttcggctacttcaaggtgctcggcaaggggatgctgccggagaagcccatcgtcg 131 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 182 cgcagttcggctacttcaaggtgctcgggaagggtctgctgccggagaagcccatcgtcg 123 Query: 132 tcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccggcggcgctg 191 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct: 122 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccgccggcggcgccg 63 Query: 192 tcgtgctcgtcgcctagggtt 212 |||||||| ||||||||||| Sbjct: 62 tcgtgctcaccgcctagggtt 42
>dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_H02 Length = 124043 Score = 224 bits (113), Expect = 1e-55 Identities = 134/141 (95%) Strand = Plus / Minus Query: 72 cgcagttcggctacttcaaggtgctcggcaaggggatgctgccggagaagcccatcgtcg 131 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 103998 cgcagttcggctacttcaaggtgctcgggaagggtctgctgccggagaagcccatcgtcg 103939 Query: 132 tcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccggcggcgctg 191 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct: 103938 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccgccggcggcgccg 103879 Query: 192 tcgtgctcgtcgcctagggtt 212 |||||||| ||||||||||| Sbjct: 103878 tcgtgctcaccgcctagggtt 103858
>ref|XM_479144.1| Oryza sativa (japonica cultivar-group), mRNA Length = 441 Score = 216 bits (109), Expect = 4e-53 Identities = 130/137 (94%) Strand = Plus / Plus Query: 72 cgcagttcggctacttcaaggtgctcggcaaggggatgctgccggagaagcccatcgtcg 131 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 305 cgcagttcggctacttcaaggtgctcgggaagggtctgctgccggagaagcccatcgtcg 364 Query: 132 tcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccggcggcgctg 191 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct: 365 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccgccggcggcgccg 424 Query: 192 tcgtgctcgtcgcctag 208 |||||||| ||||||| Sbjct: 425 tcgtgctcaccgcctag 441
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 200 bits (101), Expect = 2e-48 Identities = 142/155 (91%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 38 gccggcggcgacaaggcccccgtcgtcgacgtctcgcagttcggctacttcaaggtgctc 97 ||||||| || ||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct: 4135215 gccggcgccggcaaggcccccgtcatcgacgtcacgcagttcggctacaccaaggtgctc 4135274 Query: 98 ggcaaggggatgctgccg---gagaagcccatcgtcgtcaaggccaagctcatctccaag 154 |||||||||||||| || |||| |||||||||||||||||||||||||||||||||| Sbjct: 4135275 ggcaaggggatgctccccccagagaggcccatcgtcgtcaaggccaagctcatctccaag 4135334 Query: 155 atcgccgagaagaagatcaaggccgccggcggcgc 189 |||||||||||||||||||||||||||||||||| Sbjct: 4135335 gtcgccgagaagaagatcaaggccgccggcggcgc 4135369 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cgcggaggccggcggcgaca 50 |||||||||||||||||||| Sbjct: 8040499 cgcggaggccggcggcgaca 8040518
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 200 bits (101), Expect = 2e-48 Identities = 142/155 (91%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 38 gccggcggcgacaaggcccccgtcgtcgacgtctcgcagttcggctacttcaaggtgctc 97 ||||||| || ||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct: 45229 gccggcgccggcaaggcccccgtcatcgacgtcacgcagttcggctacaccaaggtgctc 45288 Query: 98 ggcaaggggatgctgccg---gagaagcccatcgtcgtcaaggccaagctcatctccaag 154 |||||||||||||| || |||| |||||||||||||||||||||||||||||||||| Sbjct: 45289 ggcaaggggatgctccccccagagaggcccatcgtcgtcaaggccaagctcatctccaag 45348 Query: 155 atcgccgagaagaagatcaaggccgccggcggcgc 189 |||||||||||||||||||||||||||||||||| Sbjct: 45349 gtcgccgagaagaagatcaaggccgccggcggcgc 45383
>dbj|AK121069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061G23, full insert sequence Length = 727 Score = 200 bits (101), Expect = 2e-48 Identities = 142/155 (91%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 38 gccggcggcgacaaggcccccgtcgtcgacgtctcgcagttcggctacttcaaggtgctc 97 ||||||| || ||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct: 317 gccggcgccggcaaggcccccgtcatcgacgtcacgcagttcggctacaccaaggtgctc 376 Query: 98 ggcaaggggatgctgccg---gagaagcccatcgtcgtcaaggccaagctcatctccaag 154 |||||||||||||| || |||| |||||||||||||||||||||||||||||||||| Sbjct: 377 ggcaaggggatgctccccccagagaggcccatcgtcgtcaaggccaagctcatctccaag 436 Query: 155 atcgccgagaagaagatcaaggccgccggcggcgc 189 |||||||||||||||||||||||||||||||||| Sbjct: 437 gtcgccgagaagaagatcaaggccgccggcggcgc 471
>gb|AY103771.1| Zea mays PCO152633 mRNA sequence Length = 740 Score = 198 bits (100), Expect = 8e-48 Identities = 168/190 (88%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 12 tggtgccgtccgacaaggccgcggaggccggcggcg---acaaggcccccgtcgtcgacg 68 ||||||| ||| ||||||||||||||| | ||||| || ||||||| ||||||||| Sbjct: 310 tggtgcccgccggcaaggccgcggaggcggccggcgcggaccaggccccgctcgtcgacg 369 Query: 69 tctcgcagttcggctacttcaaggtgctcggcaaggggatgctgccggagaagcccatcg 128 | |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct: 370 tgacgcagttcggctacttcaaggtgctcggcaaggggatgctgccgtccaggcccatcg 429 Query: 129 tcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccggcggcg 188 |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| Sbjct: 430 tcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggctgccggaggcg 489 Query: 189 ctgtcgtgct 198 | ||| |||| Sbjct: 490 ccgtcctgct 499
>gb|BT016406.1| Zea mays clone Contig239 mRNA sequence Length = 1257 Score = 194 bits (98), Expect = 1e-46 Identities = 152/170 (89%) Strand = Plus / Minus Query: 40 cggcggcgacaaggcccccgtcgtcgacgtctcgcagttcggctacttcaaggtgctcgg 99 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 368 cggcggcgacaaggccccgcagatcgacgtcacgcagttcggctacttcaaggtgctcgg 309 Query: 100 caaggggatgctgccggagaagcccatcgtcgtcaaggccaagctcatctccaagatcgc 159 |||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||| Sbjct: 308 gaagggggtgctgccgccaaagcccattgtcgtcaaggccaagctcatctccaaggtcgc 249 Query: 160 cgagaagaagatcaaggccgccggcggcgctgtcgtgctcgtcgcctagg 209 |||||||||||||||||| || |||||||| ||||||||| |||||||| Sbjct: 248 cgagaagaagatcaaggcagcaggcggcgccgtcgtgctcaccgcctagg 199
>gb|AY103571.1| Zea mays PCO153825 mRNA sequence Length = 725 Score = 194 bits (98), Expect = 1e-46 Identities = 173/198 (87%) Strand = Plus / Plus Query: 12 tggtgccgtccgacaaggccgcggaggccggcggcgacaaggcccccgtcgtcgacgtct 71 ||||||| |||| ||||| |||||||||||| |||||||||||| |||||||| Sbjct: 308 tggtgcccgccgaaaaggcggcggaggccggcctcgacaaggccccgcagatcgacgtca 367 Query: 72 cgcagttcggctacttcaaggtgctcggcaaggggatgctgccggagaagcccatcgtcg 131 |||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||| Sbjct: 368 cgcagttcggctacttcaaggtgctcgggaagggggtgctgccgcccaagcccattgtcg 427 Query: 132 tcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccggcggcgctg 191 ||||||||||||||||||||||| |||||||||||||||||||||| || ||||| || | Sbjct: 428 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagcaggcggggccg 487 Query: 192 tcgtgctcgtcgcctagg 209 |||||||| |||||||| Sbjct: 488 tcgtgctcaccgcctagg 505
>dbj|AB077113.1| Prunus persica mRNA, microsatellite marker M9a Length = 630 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 131 gtcaaggccaagctcatctccaagatcgccgagaagaagatcaagg 176 ||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 414 gtcaaggccaagctcatctccaagacagctgagaagaagatcaagg 459
>gb|BC064441.1| Danio rerio zgc:77235, mRNA (cDNA clone MGC:77235 IMAGE:6963142), complete cds Length = 505 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 80 ggctacttcaaggtgctcggcaaggggatgctgcc 114 ||||||||||||||||| |||||||||| |||||| Sbjct: 326 ggctacttcaaggtgctgggcaaggggaagctgcc 360
>ref|NM_200030.1| Danio rerio zgc:77235 (zgc:77235), mRNA Length = 505 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 80 ggctacttcaaggtgctcggcaaggggatgctgcc 114 ||||||||||||||||| |||||||||| |||||| Sbjct: 326 ggctacttcaaggtgctgggcaaggggaagctgcc 360
>gb|AY961477.1| Phytophthora infestans clone MY-19-H-09 ribosomal protein L27 mRNA, complete cds Length = 545 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 79 cggctacttcaaggtgctcggcaaggg 105 ||||||||||||||||||||||||||| Sbjct: 325 cggctacttcaaggtgctcggcaaggg 351
>ref|NM_191158.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 176 gccgccggcggcgctgtcgtgctcgtcgcc 205 |||||||||| ||||||||||||||||||| Sbjct: 723 gccgccggcgccgctgtcgtgctcgtcgcc 752
>ref|XM_501165.1| Yarrowia lipolytica CLIB122, YALI0B21076g predicted mRNA Length = 450 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 147 tctccaagatcgccgagaagaagatcaaggccgc 180 ||||| ||||||| |||||||||||||||||||| Sbjct: 389 tctccgagatcgctgagaagaagatcaaggccgc 422
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 176 gccgccggcggcgctgtcgtgctcgtcgcc 205 |||||||||| ||||||||||||||||||| Sbjct: 31042199 gccgccggcgccgctgtcgtgctcgtcgcc 31042228 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gccggagaagcccatcgtcg 131 |||||||||||||||||||| Sbjct: 22387425 gccggagaagcccatcgtcg 22387406
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 176 gccgccggcggcgctgtcgtgctcgtcgcc 205 |||||||||| ||||||||||||||||||| Sbjct: 99178 gccgccggcgccgctgtcgtgctcgtcgcc 99207
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 147 tctccaagatcgccgagaagaagatcaaggccgc 180 ||||| ||||||| |||||||||||||||||||| Sbjct: 2770717 tctccgagatcgctgagaagaagatcaaggccgc 2770750
>gb|AF051765.1|AF051765 Picea mariana putative 60S ribosomal protein L27a (Sb72) gene, Sb72-523 allele, partial cds Length = 468 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 120 agcccatcgtcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaagg 176 |||| ||||| |||||||||||||| || || ||| | |||||||| |||||||||| Sbjct: 128 agcctatcgtagtcaaggccaagcttatttctaagctggccgagaaaaagatcaagg 184
>gb|AF051764.1|AF051764 Picea mariana putative 60S ribosomal protein L27a (Sb72) gene, Sb72-515 allele, partial cds Length = 449 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 120 agcccatcgtcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaagg 176 |||| ||||| |||||||||||||| || || ||| | |||||||| |||||||||| Sbjct: 117 agcctatcgtagtcaaggccaagcttatttctaagctggccgagaaaaagatcaagg 173
>gb|AF051252.1|AF051252 Picea mariana probable 60S ribosomal protein L27a (Sb72) mRNA, partial cds Length = 577 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 120 agcccatcgtcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaagg 176 |||| ||||| |||||||||||||| || || ||| | |||||||| |||||||||| Sbjct: 175 agcctatcgtagtcaaggccaagcttatttctaagctggccgagaaaaagatcaagg 231
>dbj|AB042856.1| Panax ginseng mRNA for 60S ribosomal protein L27a, complete cds Length = 590 Score = 48.1 bits (24), Expect = 0.019 Identities = 45/52 (86%) Strand = Plus / Plus Query: 125 atcgtcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaagg 176 ||||| || |||||||||||| | ||||||| || |||||||||||||||| Sbjct: 374 atcgttgtgaaggccaagctcgtgtccaagactgcggagaagaagatcaagg 425
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 46.1 bits (23), Expect = 0.075 Identities = 47/55 (85%) Strand = Plus / Minus Query: 129 tcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccgg 183 |||||||||||| || |||||||| | |||||| ||||||||||||| ||||| Sbjct: 371025 tcgtcaaggccagattcgtctccaagctagccgaggagaagatcaaggctgccgg 370971
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 172 caaggccgccggcggcgctgtcg 194 ||||||||||||||||||||||| Sbjct: 3343430 caaggccgccggcggcgctgtcg 3343452 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 agatcgccgagaagaagatcaagg 176 ||||||||||||||||||| |||| Sbjct: 2626875 agatcgccgagaagaagatgaagg 2626898 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cggcgctgtcgtgctcgtcg 203 |||||||||||||||||||| Sbjct: 666122 cggcgctgtcgtgctcgtcg 666103
>gb|AY116644.1| Streptomyces viridifaciens amino acid aminotransfease gene, partial cds; ketol-acid reductioisomerase, acetolactate synthetase small subunit, acetolactate synthetase large subunit, complete cds; azoxy antibiotic valanimycin gene cluster, complete sequence; and putative transferase, and putative secreted protein genes, complete cds Length = 24613 Score = 46.1 bits (23), Expect = 0.075 Identities = 29/31 (93%) Strand = Plus / Plus Query: 34 ggaggccggcggcgacaaggcccccgtcgtc 64 |||||||||||||||||||||| | |||||| Sbjct: 10844 ggaggccggcggcgacaaggcctcggtcgtc 10874
>ref|NM_210867.1| Eremothecium gossypii AFL035Cp (AFL035C), mRNA Length = 450 Score = 46.1 bits (23), Expect = 0.075 Identities = 47/55 (85%) Strand = Plus / Plus Query: 129 tcgtcaaggccaagctcatctccaagatcgccgagaagaagatcaaggccgccgg 183 |||||||||||| || |||||||| | |||||| ||||||||||||| ||||| Sbjct: 371 tcgtcaaggccagattcgtctccaagctagccgaggagaagatcaaggctgccgg 425
>dbj|AP006094.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39H01, TM0172, complete sequence Length = 127731 Score = 46.1 bits (23), Expect = 0.075 Identities = 38/43 (88%) Strand = Plus / Minus Query: 134 aaggccaagctcatctccaagatcgccgagaagaagatcaagg 176 ||||| |||||||| || ||||| || |||||||||||||||| Sbjct: 97352 aaggcgaagctcatttcgaagattgctgagaagaagatcaagg 97310
>ref|XM_475150.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1656 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 aggccgcggaggccggcggcg 47 ||||||||||||||||||||| Sbjct: 170 aggccgcggaggccggcggcg 150
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 aggccgcggaggccggcggcg 47 ||||||||||||||||||||| Sbjct: 99241 aggccgcggaggccggcggcg 99221
>ref|XM_883456.1| Leishmania major strain Friedlin hypothetical protein (L2743.03) partial mRNA Length = 2574 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 181 cggcggcgctgtcgtgctcgtcgcc 205 |||||||||||||||| |||||||| Sbjct: 1168 cggcggcgctgtcgtgttcgtcgcc 1144
>ref|XM_754375.1| Ustilago maydis 521 hypothetical protein (UM03321.1) partial mRNA Length = 564 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 tcgccgagaagaagatcaagg 176 ||||||||||||||||||||| Sbjct: 512 tcgccgagaagaagatcaagg 532
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end Length = 225394 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 181 cggcggcgctgtcgtgctcgtcgcc 205 |||||||||||||||| |||||||| Sbjct: 110338 cggcggcgctgtcgtgttcgtcgcc 110314
>ref|XM_539020.2| PREDICTED: Canis familiaris similar to 5T4 oncofetal trophoblast glycoprotein (LOC481899), mRNA Length = 2747 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 gccgcggaggccggcggcgac 49 ||||||||||||||||||||| Sbjct: 901 gccgcggaggccggcggcgac 881
>gb|AC092148.6| Homo sapiens BAC clone RP11-95L23 from 7, complete sequence Length = 40101 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 ttagtttgttattctggttcc 314 ||||||||||||||||||||| Sbjct: 25989 ttagtttgttattctggttcc 25969
>emb|X86552.1|BJDNASHC B.japonicum shc gene Length = 5003 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 ggaggccggcggcgacaaggc 54 ||||||||||||||||||||| Sbjct: 4037 ggaggccggcggcgacaaggc 4057
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 aggccgccggcggcgctgtcg 194 ||||||||||||||||||||| Sbjct: 90214 aggccgccggcggcgctgtcg 90194
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 aggccgcggaggccggcggcg 47 ||||||||||||||||||||| Sbjct: 17839287 aggccgcggaggccggcggcg 17839267 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ggaggccggcggcgacaagg 53 |||||||||||||||||||| Sbjct: 5065097 ggaggccggcggcgacaagg 5065078
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 ggaggccggcggcgacaaggc 54 ||||||||||||||||||||| Sbjct: 3316196 ggaggccggcggcgacaaggc 3316216 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 agatcgccgagaagaagatcaagg 176 ||||||||||||||||||| |||| Sbjct: 5959778 agatcgccgagaagaagatgaagg 5959755
>gb|AY293853.1| Holosticha sp. WJC-2003 micronucleus, complete genome Length = 10116 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atcgttagtttgttattctg 309 |||||||||||||||||||| Sbjct: 9880 atcgttagtttgttattctg 9861
>ref|XM_482082.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3262 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 ccgacaaggccgcggaggccggcg 44 ||||||||||||||| |||||||| Sbjct: 1865 ccgacaaggccgcggcggccggcg 1842
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cgagaagaagatcaaggccg 179 |||||||||||||||||||| Sbjct: 945911 cgagaagaagatcaaggccg 945930
>ref|NM_192983.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 801 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gccggagaagcccatcgtcg 131 |||||||||||||||||||| Sbjct: 591 gccggagaagcccatcgtcg 572
>ref|XM_470196.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1392 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ggccgcggaggccggcggcg 47 |||||||||||||||||||| Sbjct: 300 ggccgcggaggccggcggcg 319
>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12, complete sequence Length = 187523 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ggaggccggcggcgacaagg 53 |||||||||||||||||||| Sbjct: 159682 ggaggccggcggcgacaagg 159663
>gb|DQ356948.1| Crocodilepox virus, complete genome Length = 190054 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccgtcgtcgacgtctcgca 75 |||||||||||||||||||| Sbjct: 110737 cccgtcgtcgacgtctcgca 110756
>gb|AY423269.1| Streptomyces diastaticus 108 cytochrome P450 monooxygenase (mnp1), type I polyketide synthase (mnp2), and cytochrome P450 monooxygenase (mnp3) genes, complete cds Length = 13513 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ggccgcggaggccggcggcg 47 |||||||||||||||||||| Sbjct: 4661 ggccgcggaggccggcggcg 4680
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 agatcgccgagaagaagatcaagg 176 ||||||||||||||||||| |||| Sbjct: 1477344 agatcgccgagaagaagatgaagg 1477367
>gb|AC004112.2| Homo sapiens BAC clone CTA-313E3 from 7, complete sequence Length = 155536 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 agtttgttattctggttcct 315 |||||||||||||||||||| Sbjct: 94517 agtttgttattctggttcct 94498
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaggccgcggaggccggcg 44 |||||||||||||||||||| Sbjct: 3366381 caaggccgcggaggccggcg 3366362 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 agatcaaggccgccggcggc 187 |||||||||||||||||||| Sbjct: 2057804 agatcaaggccgccggcggc 2057823
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cgagaagaagatcaaggccg 179 |||||||||||||||||||| Sbjct: 905269 cgagaagaagatcaaggccg 905288
>gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, complete sequence Length = 188333 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 agtttgttattctggttcct 315 |||||||||||||||||||| Sbjct: 73411 agtttgttattctggttcct 73392
>ref|XM_762522.1| Giardia lamblia ATCC 50803 60S ribosomal protein L27A (GLP_576_8571_8122) partial mRNA Length = 450 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 ttcggctacttcaaggtgctcggc 100 ||||||| |||||||||||||||| Sbjct: 319 ttcggcttcttcaaggtgctcggc 342
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 agatcgccgagaagaagatcaagg 176 ||||||||||||||||||| |||| Sbjct: 1733134 agatcgccgagaagaagatgaagg 1733157
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 agatcgccgagaagaagatcaagg 176 ||||||||||||||||||| |||| Sbjct: 3552072 agatcgccgagaagaagatgaagg 3552049
>emb|AL357623.14| Human DNA sequence from clone RP11-342E24 on chromosome 9 Contains part of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351), complete sequence Length = 39420 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggttcctgtgtggtaaacca 328 |||||||||||||||||||| Sbjct: 25445 ggttcctgtgtggtaaacca 25464
>emb|AL157883.15| Human DNA sequence from clone RP11-360J12 on chromosome 9q21.12-21.32 Contains an orthodenticle homolog 2 (Drosophila) (OTX2) pseudogene, complete sequence Length = 176870 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 tctatatcttaagtactagt 255 |||||||||||||||||||| Sbjct: 12107 tctatatcttaagtactagt 12126
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ggccgcggaggccggcggcg 47 |||||||||||||||||||| Sbjct: 15756 ggccgcggaggccggcggcg 15775
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gatgctgccggagaagccca 125 |||||||||||||||||||| Sbjct: 221830 gatgctgccggagaagccca 221849
>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0011G21, from chromosome 3, complete sequence Length = 142401 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgcggaggccggcggcgaca 50 |||||||||||||||||||| Sbjct: 56787 cgcggaggccggcggcgaca 56768
>gb|DQ397841.1| Cenarchaeum symbiosum clone C06A09, complete sequence Length = 38485 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 caaggggatgctgccggagaagcc 123 ||||||||| |||||||||||||| Sbjct: 17090 caaggggatactgccggagaagcc 17067
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cggcgctgtcgtgctcgtcg 203 |||||||||||||||||||| Sbjct: 508425 cggcgctgtcgtgctcgtcg 508406
>gb|AE011921.1| Xanthomonas axonopodis pv. citri str. 306, section 299 of 469 of the complete genome Length = 10062 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaggccgcggaggccggcg 44 |||||||||||||||||||| Sbjct: 2862 caaggccgcggaggccggcg 2843
>gb|AE011811.1| Xanthomonas axonopodis pv. citri str. 306, section 189 of 469 of the complete genome Length = 10644 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 agatcaaggccgccggcggc 187 |||||||||||||||||||| Sbjct: 7620 agatcaaggccgccggcggc 7639
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 caaggccgcggaggccggcggcga 48 |||||||| ||||||||||||||| Sbjct: 3545855 caaggccgaggaggccggcggcga 3545832
>gb|AF385625.1|AF385625 Sus scrofa interleukin-13 gene, complete cds Length = 2579 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tcaaggccaagctcatctcc 151 |||||||||||||||||||| Sbjct: 451 tcaaggccaagctcatctcc 432
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 ccgacaaggccgcggaggccggcg 44 ||||||||||||||| |||||||| Sbjct: 17644782 ccgacaaggccgcggcggccggcg 17644805
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 caaggccgcggaggccggcg 44 |||||||||||||||||||| Sbjct: 6665957 caaggccgcggaggccggcg 6665976
>gb|AE004714.1| Pseudomonas aeruginosa PAO1, section 275 of 529 of the complete genome Length = 10366 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 agatcgccgagaagaagatc 172 |||||||||||||||||||| Sbjct: 8712 agatcgccgagaagaagatc 8731
>gb|AE004607.1| Pseudomonas aeruginosa PAO1, section 168 of 529 of the complete genome Length = 10160 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cgtcgacgtctcgcagttcg 80 |||||||||||||||||||| Sbjct: 5071 cgtcgacgtctcgcagttcg 5052
>ref|XM_215469.3| PREDICTED: Rattus norvegicus microtubule-associated protein 1b (Map1b), mRNA Length = 10491 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gacaaggccgcggaggccgg 42 |||||||||||||||||||| Sbjct: 3294 gacaaggccgcggaggccgg 3313
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gaagatcaaggccgccggcg 185 |||||||||||||||||||| Sbjct: 180473 gaagatcaaggccgccggcg 180454
>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0503B05 Length = 156814 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cgcggaggccggcggcgaca 50 |||||||||||||||||||| Sbjct: 28692 cgcggaggccggcggcgaca 28711
>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672C09 Length = 145655 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gccggagaagcccatcgtcg 131 |||||||||||||||||||| Sbjct: 11563 gccggagaagcccatcgtcg 11544
>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013G02 Length = 163419 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gccggagaagcccatcgtcg 131 |||||||||||||||||||| Sbjct: 84695 gccggagaagcccatcgtcg 84676
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0436B06 Length = 148947 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 ccgacaaggccgcggaggccggcg 44 ||||||||||||||| |||||||| Sbjct: 121432 ccgacaaggccgcggcggccggcg 121455
>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_C03 Length = 118339 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 ccgacaaggccgcggaggccggcg 44 ||||||||||||||| |||||||| Sbjct: 30171 ccgacaaggccgcggcggccggcg 30194
>dbj|AK109328.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H11, full insert sequence Length = 768 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgcggaggccggcggcgaca 50 |||||||||||||||||||| Sbjct: 307 cgcggaggccggcggcgaca 288
>dbj|AK106657.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-G08, full insert sequence Length = 1516 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgcggaggccggcggcgaca 50 |||||||||||||||||||| Sbjct: 443 cgcggaggccggcggcgaca 424
>dbj|AK072348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050N03, full insert sequence Length = 3262 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 ccgacaaggccgcggaggccggcg 44 ||||||||||||||| |||||||| Sbjct: 1865 ccgacaaggccgcggcggccggcg 1842
>gb|AC147652.4| Pan troglodytes BAC clone RP43-136A3 from chromosome 7, complete sequence Length = 196621 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 agtttgttattctggttcct 315 |||||||||||||||||||| Sbjct: 98541 agtttgttattctggttcct 98522
>emb|X60370.1|RRMAP1B5 R.norvegicus mRNA for microtubule associated protein IB Length = 7095 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gacaaggccgcggaggccgg 42 |||||||||||||||||||| Sbjct: 2842 gacaaggccgcggaggccgg 2861
>emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosynthetic gene cluster Length = 77550 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 caaggccgccggcggcgctgtcgt 195 |||||||||||||||| ||||||| Sbjct: 38159 caaggccgccggcggcactgtcgt 38136
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 tcggctacttcaaggtgctcggca 101 |||||| ||||||||||||||||| Sbjct: 2174312 tcggctccttcaaggtgctcggca 2174335
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cttcaaggtgctcggcaagg 104 |||||||||||||||||||| Sbjct: 1531646 cttcaaggtgctcggcaagg 1531665
>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete sequence Length = 216239 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 caagacatcgttagtttgtt 303 |||||||||||||||||||| Sbjct: 23637 caagacatcgttagtttgtt 23618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,518,816 Number of Sequences: 3902068 Number of extensions: 2518816 Number of successful extensions: 55163 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53158 Number of HSP's gapped (non-prelim): 1993 length of query: 348 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 326 effective length of database: 17,147,199,772 effective search space: 5589987125672 effective search space used: 5589987125672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
