ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdf14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CANA_DROME (Q11002) Calpain A (EC 3.4.22.-) (Calcium-activated n... 30 1.5
2CCL3_RAT (P50229) Small inducible cytokine A3 precursor (CCL3) (... 28 5.7
3MT2_CAEEL (P17512) Metallothionein-2 (MT-2) (Metallothionein-II)... 28 7.4
4ARSB_HUMAN (P15848) Arylsulfatase B precursor (EC 3.1.6.12) (ASB... 28 7.4
5NU2M_DROYA (P03895) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 27 9.7
6CSR2_YEAST (Q12734) Transcription factor CSR2 (CHS5 SPA2 rescue ... 27 9.7

>CANA_DROME (Q11002) Calpain A (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase A) (CANP A) [Contains: Calpain A catalytic
           subunit]
          Length = 828

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 315 PNHIISNPQFFTTELHEGFRLQQKHLQ--YILATLLRINVLTTNKFRTTTCTQSYQLNY 145
           P+ I  NPQFF  E +  F +QQ  L   ++LA    +   +   FR     QS++ NY
Sbjct: 116 PHEIAENPQFF-VEGYSRFDVQQGELGDCWLLAATANLTQESNLFFRVIPAEQSFEENY 173



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>CCL3_RAT (P50229) Small inducible cytokine A3 precursor (CCL3) (Macrophage|
           inflammatory protein 1-alpha) (MIP-1-alpha)
          Length = 92

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 104 LLLVVPSLKHRLFTSFFGWDNDNRCCFTVGKQ 9
           +LL   +L + +F++ +G D    CCF+ G+Q
Sbjct: 10  VLLCTMALWNEVFSAPYGADTPTACCFSYGRQ 41



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>MT2_CAEEL (P17512) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)|
           (Metallothionein-like protein) (MT-Ce)
          Length = 62

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 236 CKCFCCNLNPSCSSVVKNC 292
           CKC C N N SC++  K+C
Sbjct: 2   CKCDCKNQNCSCNTGTKDC 20



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>ARSB_HUMAN (P15848) Arylsulfatase B precursor (EC 3.1.6.12) (ASB)|
           (N-acetylgalactosamine-4-sulfatase) (G4S)
          Length = 533

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
 Frame = -2

Query: 264 GFRLQQKHLQYILATLLRINVLTTNKFRTTTCTQS--------YQLNYIKLKVQHQTSAP 109
           G R++  HL  + A      VL  N +    CT S        YQ   I+  +QHQ   P
Sbjct: 64  GSRIRTPHLDALAAG----GVLLDNYYTQPLCTPSRSQLLTGRYQ---IRTGLQHQIIWP 116

Query: 108 LSPTCRPL 85
             P+C PL
Sbjct: 117 CQPSCVPL 124



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>NU2M_DROYA (P03895) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 237 QYILATLLRINVLTTNKFRTTTCTQSYQLNYIK 139
           QY L TL+ ++ L T  F    C  ++ LNY +
Sbjct: 271 QYFLLTLMMMSTLITLFFYLRICYSAFMLNYFE 303



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>CSR2_YEAST (Q12734) Transcription factor CSR2 (CHS5 SPA2 rescue protein 2)|
          Length = 1121

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/69 (18%), Positives = 33/69 (47%)
 Frame = -2

Query: 324 ARVPNHIISNPQFFTTELHEGFRLQQKHLQYILATLLRINVLTTNKFRTTTCTQSYQLNY 145
           +R+P  +       +  L    +L+ +H Q + +     ++ +  K R+ +C+ SY+ + 
Sbjct: 486 SRIPESLYYPSARVSYSLRLATKLKDEHTQLVASRPRSSSISSPQKLRSYSCSDSYEYSQ 545

Query: 144 IKLKVQHQT 118
           I   ++ +T
Sbjct: 546 IDDTIEGET 554


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,215,234
Number of Sequences: 219361
Number of extensions: 714131
Number of successful extensions: 1994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1994
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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