>TRMU_PSESM (Q87ZR6) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 376

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 12  LEASEVAAIASKYGVSTQDAAFKSELCDL----YASFVYSVLPPGHEDLKGTEVEAI 170
           LE  +V AIA K+G++T      + +C +    +  F+   LP    D+K TE E I
Sbjct: 178 LEKPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLPAQPGDIKTTEGEVI 234

>TRMU_PSEPK (Q88FR9) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 374

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 12  LEASEVAAIASKYGVSTQDAAFKSELCDL----YASFVYSVLPPGHEDLKGTEVEAI 170
           LE  EV AIA K+G++T      + +C +    ++ F+   LP    D++ TE E I
Sbjct: 178 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGDIETTEGEVI 234

>RRPL_PUUMH (P27176) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 2156

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +3

Query: 99  YASFVYSVLPPGHEDLKGTEVEAIKKFKKALGLDDVDAANW*TLIQRETRCIPKVNFCVE 278
           Y S +  +LP    ++ G+ +     FK+ LGL D D  +    I   T C  K+   + 
Sbjct: 505 YGSVLLCILPSKSLEVAGSFIRFFTVFKEGLGLIDADNLDSKVEIDGVTWCFSKI---IS 561

Query: 279 SCLRRCIRLHTSMETS 326
             L R + L+ + E S
Sbjct: 562 LDLNRLLALNIAFEKS 577

>TRMU_PSEAE (Q9I0L2) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 375

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 12  LEASEVAAIASKYGVSTQDAAFKSELCDL----YASFVYSVLPPGHEDLKGTEVEAI 170
           LE  EV AIA K+G++T      + +C +    +  F+   LP    D++ TE + I
Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDIETTEGKVI 233

>YBI1_YEAST (P38180) Hypothetical 40.8 kDa protein in RHK1-PET112 intergenic|
           region
          Length = 368

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = -3

Query: 509 ACSLNMSAATSSKSLYASCTLLTSMSVPMSRPLPIDLSSNA 387
           A S N+S+++S+ S++ + T  TS S  +   LP+  +S++
Sbjct: 227 AASTNLSSSSSNNSMHTNPTTATSTSADLINDLPVGPTSSS 267

>SYGA_STRMU (Q8CWY6) Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase alpha chain) (GlyRS)
          Length = 305

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 24/85 (28%), Positives = 42/85 (49%)
 Frame = +1

Query: 238 ERLDAFQKLIFVSNLVFGDASDFILPWKHLFGITDYQIDIAMRENAKSLYALELKSIGRG 417
           E+ +A  K     +LV   A D+IL   H F + D +  +++ E A   Y   ++++ R 
Sbjct: 218 EKFEAEAKRCLEGSLVH-PAYDYILKCSHTFNLLDARGAVSVTERAG--YIARIRNLAR- 273

Query: 418 LDIGTLIEVRRVQLAYKLFDEVAAD 492
           +   T +  RR +L Y L DE+  +
Sbjct: 274 VAAKTFVAERR-RLGYPLLDEMTRE 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,172,702
Number of Sequences: 219361
Number of extensions: 1116111
Number of successful extensions: 2978
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2978
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)